EWM28269.1, cds2530 (CDS) Nannochloropsis gaditana

Overview
NameEWM28269.1
Unique Namecds2530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:613238..614050 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28269.1
Productamino acid transporter
Partialtrue
Orig transcript idgnl|cribi|Naga_100004g182.9200.mrna
GbkeyCDS
End range.
End range614050
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:613238..614050 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Homology
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|585110614|gb|EWM28269.1| (amino acid transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQEPVGIPLWRWDGMPVFLPIAC 271
            MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQEPVGIPLWRWDGMPVFLPIAC
Sbjct:    1 MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQEPVGIPLWRWDGMPVFLPIAC 271          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|1072234898|gb|OEU19627.1| (hypothetical protein FRACYDRAFT_235686 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 131.724 bits (330), Expect = 2.144e-31
Identity = 94/295 (31.86%), Postives = 147/295 (49.83%), Query Frame = 0
Query:   37 VAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELI------------------ENPSCF--------------------------LTEGQAGGIVTPAL------VRRIHISQDLPLLLTVK-KRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGES-----------FPEQQEPVGIPLWRWDGMPVFLPI 269
            V   FT+NY++GTGFLTLP+A  + G +L+++A+  +  +SNI  D+++ S ARAE++                  E P                             LT   +G  VTP++        + + S +   LL V+ K +YE+  LC++FLG  G  +Y I +++  YG L AY +VF  ++A  FPL  P  D  Y +Y+ LFA++V+P+S LEL EQ S+Q+ L+ CR+  +  M+ + + A     E            F +Q EP+G PL+R   +   LPI
Sbjct:   29 VCACFTLNYLIGTGFLTLPWAFERAGILLSMIAMCIICFVSNIGVDFIVTSCARAEVLMSYRKRTGHSYKEEGGVEERPKKMTETTGLLLSQQIHTIGEEASSVNTKELTSQNSGDEVTPSMGYESDDDDKSNASDNNKNLLVVQGKHRYELTELCKIFLGDTGLKVYGISVALDCYGFLWAYASVFGAAMAHSFPLFGPGVDC-YHMYVILFAIIVVPMSFLELAEQASMQIFLSGCRIACILFMIITPVLAALFESEGNMKDSIQPIAHFDDQTEPIGSPLFRLSKIHEMLPI 322          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|290987277|ref|XP_002676349.1| (predicted protein [Naegleria gruberi] >gi|284089951|gb|EFC43605.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 122.094 bits (305), Expect = 1.711e-28
Identity = 75/228 (32.89%), Postives = 120/228 (52.63%), Query Frame = 0
Query:   24 EDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDL------PLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLP-------------APHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMV 232
              S+++   +G  VA  F VNYI+G G L +P    + G+++  V L  +   + +  +++LE+  RA        F  + +    +    V R+  S +L        L    +R+YEM  LC+LFLG  GK++Y I L  Y+YG+L +Y TVFA S+A+  PLP             +   D  Y +Y+G++A++VIP++CL LTEQ  VQ+ L   R + +A M+
Sbjct:   45 NKSNNQAHTYGSFVAYCFCVNYILGVGVLGVPNGFQKGGTIIGPVFLLIVTIFAALVLNWILETLCRATPF-----FKEQEEESKHLQDEDVLRLDASNNLIEIGEEKDLFHFPERRYEMNELCRLFLGRFGKIIYDIALCFYLYGSLWSYSTVFAESMASHVPLPINGWYTCNVNSDNSVSCDILYKIYVGIYALVVIPMTCLNLTEQKPVQIILTIFRYVALALMI 267          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|397582930|gb|EJK52465.1| (hypothetical protein THAOC_28252 [Thalassiosira oceanica])

HSP 1 Score: 109.768 bits (273), Expect = 1.660e-23
Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 0
Query:  125 PLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHAD---ATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMV-------GSVLAACAHTGESFP--EQQEPV----GIPLWRWDGMPVFLPI 269
            P    VK RK+E+  LC++FLG  GK +Y+  LS+Y+Y AL AY  VF++++A  FPLP    D    +Y VY   FA +V+P+SCLEL EQ++ Q+ L+ CR  MV  MV       GS+     + G   P  E + P+    G PL+R  GM   LPI
Sbjct:  204 PAKFLVKNRKFEINALCRVFLGRRGKDVYISFLSMYLYCALWAYAAVFSSAMARQFPLPVGGVDVESGSYVVYAAAFAFVVVPMSCLELHEQVTAQVLLSICRFNMVFLMVWTSSDCAGSLNRRSNNDGVPDPSEEDETPIISGGGAPLFRPSGMHKMLPI 364          

HSP 2 Score: 65.4698 bits (158), Expect = 2.027e-8
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 0
Query:   25 DSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAE 92
            D S  + GF   VA  FT+NYI+GTGFLTLP+A  Q G VL+ + L  +  L+++AKD++LE+ ARAE
Sbjct:   43 DPSKSRGGFSPFVAFCFTINYILGTGFLTLPWAFVQGGLVLSTLLLLVVCVLADVAKDFILETIARAE 110          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|290977355|ref|XP_002671403.1| (predicted protein [Naegleria gruberi] >gi|284084972|gb|EFC38659.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 92.8189 bits (229), Expect = 8.450e-18
Identity = 68/261 (26.05%), Postives = 116/261 (44.44%), Query Frame = 0
Query:   33 FGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARA-----ELIENPSCFLTEGQAGGIVTPALVRRIHISQDLP---------------------------------LLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLP-----------------APHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAA 238
            +   VA  + VNYI+G G L +PYA  + G ++  + L  +  L+ +   ++LE+  R+     E  E    +     +  +  P +     +  ++                                  +     ++KYEM  LC L LG+ GK++Y   L++ +YG L A  T+FA S+++  PLP                 + + DA Y +Y+G+FA+ VIP++CL LTEQ  VQ+ L   R + +  MV + L +
Sbjct:   65 YNSFVAYCYCVNYILGVGVLGIPYAFQKGGLLMGPIFLLIVTLLAGMVLVWILETLCRSVPFFKEKEEQKKDYKMLSASSSVSLPTVESSASVDSNINAVEEEETSTTPPDDKKETKQVDTTSIATEEGTRIEFPFPEKKYEMNELCALLLGWPGKIIYEGALALCLYGNLWALSTIFAESMSSNVPLPVGPNNYNWFTCNVYTDGSSNCDALYKIYIGVFALFVIPMTCLNLTEQKIVQIFLTIFRYVALTLMVVTTLVS 325          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|196008315|ref|XP_002114023.1| (hypothetical protein TRIADDRAFT_58063 [Trichoplax adhaerens] >gi|190583042|gb|EDV23113.1| hypothetical protein TRIADDRAFT_58063 [Trichoplax adhaerens])

HSP 1 Score: 92.8189 bits (229), Expect = 1.147e-17
Identity = 65/235 (27.66%), Postives = 114/235 (48.51%), Query Frame = 0
Query:   27 SSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHIS-QDLPLLLT---------VKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPA-----------------PHADA---TYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACM 231
            + +   +G  +   + VNYI+GTGFL +PY     G++   + L +++  S +   + LE+ +RA+ IE  S    E     ++     +  + S +  P   T         + +RK+E+  LC LFLG   K++YM+ L +Y+  A  ++ TV A++ ++  P                    P A     +Y +  G+FAV+V+ LSCLE+TEQ  +Q+ +   R ++V  M
Sbjct:    3 AEEASNYGVFIGYLYLVNYILGTGFLGIPYVIHHGGTIAGCLTLLTISFFSCLTSIWTLETISRAQAIERTSSAQEEEVTKKLINAEDCQASYDSIEQYPNNTTNNNIISYGQMSRRKFEITELCNLFLGDKAKIVYMLVLFVYLALACWSFTTVAASTWSSNIPFGNGSSLRQCTQEDFQDRIIPEAGGCLNSYRLCAGIFAVIVLSLSCLEVTEQKIIQIIMGILRFVVVLFM 237          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|673053171|ref|XP_008880546.1| (hypothetical protein H310_14459 [Aphanomyces invadans] >gi|574463729|gb|ETV90789.1| hypothetical protein H310_14459 [Aphanomyces invadans])

HSP 1 Score: 90.8929 bits (224), Expect = 2.372e-17
Identity = 73/230 (31.74%), Postives = 108/230 (46.96%), Query Frame = 0
Query:   36 VVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIH-ISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGS-VLAACAHTGESFPEQQEPVGIPLWRWDGM 263
            +V  ++T+N I+G G LT+PYA    G VL +  +  M+ LS +   +  E+  R                         RR+  + QD            E+ TLC+++LG  G  LY + L  Y Y  L+A+  VF  + +  FP        T G  L L++ +VIPLSC++LTEQI VQ+ L S R +    M GS +L    H+G S P       +PL  +DG+
Sbjct:   28 LVCYSYTLNTILGVGCLTIPYAVYHAGLVLGLSTVVVMSFLSYLTVLWTCETLERHR-----------------------RRLQLVPQD-------NSDDVEVVTLCRVYLGSTGAHLYQVALYSYGYAVLVAFAQVFIAATSTQFP-----GLTTTGAVL-LYSAVVIPLSCVDLTEQIVVQLFLTSIRFVAFTLMGGSLLLTRSIHSGHSDP-------LPLVDFDGL 214          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|551650846|ref|XP_005828205.1| (hypothetical protein GUITHDRAFT_52232, partial [Guillardia theta CCMP2712] >gi|428172315|gb|EKX41225.1| hypothetical protein GUITHDRAFT_52232, partial [Guillardia theta CCMP2712])

HSP 1 Score: 90.8929 bits (224), Expect = 2.623e-17
Identity = 63/196 (32.14%), Postives = 106/196 (54.08%), Query Frame = 0
Query:   38 AVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAE---LIENPSCFLTEGQAGGIVT-----PALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLP---APHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALAS 222
            A   TVN ++G G + LPYA    G+V++++++F    +S +   Y++E  +R     + E PS  +TE  AG   +     PA+ R + +              YEM  LC +FLG +G+ L+ +CL +Y  G+L  Y TVF +S++ + PLP    P + A   V+L  FA+L++ ++C++L    +VQ  L+S
Sbjct:    1 ATILTVNMVVGAGVVGLPYAFYHAGAVISLISMFIATVMSAMTMGYLVEGGSRGRDDAIAELPSD-VTELDAGPSSSKHEARPAVDREVAM--------------YEMSELCGIFLGGYGRKLFELCLLLYTIGSLWLYATVFGSSLSLVVPLPLGDRPTSIAWCLVFLCFFALLMVAMACMDLAALKNVQFLLSS 181          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|669159050|ref|XP_008615087.1| (hypothetical protein SDRG_10851 [Saprolegnia diclina VS20] >gi|530733446|gb|EQC31688.1| hypothetical protein SDRG_10851 [Saprolegnia diclina VS20])

HSP 1 Score: 90.8929 bits (224), Expect = 4.316e-17
Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 0
Query:   36 VVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAA 238
            +VA +FTVNYI+G G L +PYA    G +   + L  ++ LS I   +V E++ RA           E  A    T  L   +H                E+ TLC+ FLG+ G  +Y I L   +YG L+ Y  VF NS+A+     A  A +   V + +F ++V+PLSC++L EQI VQ+ +A  R + +  M+ S   A
Sbjct:  127 LVAYSFTVNYILGVGSLGVPYALYHAGLLFGSIMLLIVSWLSYITVMWVSETTVRAR----------ELDAMNTHTKLLADPMHFP--------------EVTTLCERFLGHIGARVYQISLLGLMYGGLIGYAQVFVNSIASQL---ASFAMSNVAVAI-VFGLIVVPLSCVDLNEQIHVQVGMAVLRFVALLTMIVSAAVA 301          
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|813218292|ref|XP_012210524.1| (hypothetical protein SPRG_15926 [Saprolegnia parasitica CBS 223.65] >gi|641524102|gb|KDO18763.1| hypothetical protein SPRG_15926 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 90.5077 bits (223), Expect = 4.999e-17
Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 0
Query:   36 VVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAA 238
            +VA +FTVNYI+G G L +PYA    G +   + L  ++ LS I   +V E++ R            E  A    T  LV  +H                E+ TLC+ FLG+ G  +Y I L   +YG L+ Y  VF NS+A+     A  A +   V + +F ++V+PLSC++L EQI VQ+ +A  R + +  M+ S   A
Sbjct:   82 LVAYSFTVNYILGVGSLGVPYALYHAGLLFGSIMLVVVSWLSYITVMWVSETTVRGR----------ELDAMNTHTKLLVDPMHFP--------------EVTTLCERFLGHCGARIYQISLLGLMYGGLIGYAQVFVNSIASQL---ASLAISNVAVAI-VFGLIVVPLSCVDLNEQIHVQVGMAVLRFVALLTMIVSAAVA 256          
The following BLAST results are available for this feature:
BLAST of EWM28269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110614|gb|EWM28269.1|0.000e+0100.00amino acid transporter, partial [Nannochloropsis g... [more]
gi|1072234898|gb|OEU19627.1|2.144e-3131.86hypothetical protein FRACYDRAFT_235686 [Fragilario... [more]
gi|290987277|ref|XP_002676349.1|1.711e-2832.89predicted protein [Naegleria gruberi] >gi|28408995... [more]
gi|397582930|gb|EJK52465.1|1.660e-2341.61hypothetical protein THAOC_28252 [Thalassiosira oc... [more]
gi|290977355|ref|XP_002671403.1|8.450e-1826.05predicted protein [Naegleria gruberi] >gi|28408497... [more]
gi|196008315|ref|XP_002114023.1|1.147e-1727.66hypothetical protein TRIADDRAFT_58063 [Trichoplax ... [more]
gi|673053171|ref|XP_008880546.1|2.372e-1731.74hypothetical protein H310_14459 [Aphanomyces invad... [more]
gi|551650846|ref|XP_005828205.1|2.623e-1732.14hypothetical protein GUITHDRAFT_52232, partial [Gu... [more]
gi|669159050|ref|XP_008615087.1|4.316e-1733.50hypothetical protein SDRG_10851 [Saprolegnia dicli... [more]
gi|813218292|ref|XP_012210524.1|4.999e-1733.50hypothetical protein SPRG_15926 [Saprolegnia paras... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2538rna2538Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications