EWM28269.1, cds2530 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|585110614|gb|EWM28269.1| (amino acid transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query: 1 MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQEPVGIPLWRWDGMPVFLPIAC 271
MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQEPVGIPLWRWDGMPVFLPIAC
Sbjct: 1 MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQEPVGIPLWRWDGMPVFLPIAC 271
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|1072234898|gb|OEU19627.1| (hypothetical protein FRACYDRAFT_235686 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 131.724 bits (330), Expect = 2.144e-31 Identity = 94/295 (31.86%), Postives = 147/295 (49.83%), Query Frame = 0
Query: 37 VAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELI------------------ENPSCF--------------------------LTEGQAGGIVTPAL------VRRIHISQDLPLLLTVK-KRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGES-----------FPEQQEPVGIPLWRWDGMPVFLPI 269
V FT+NY++GTGFLTLP+A + G +L+++A+ + +SNI D+++ S ARAE++ E P LT +G VTP++ + + S + LL V+ K +YE+ LC++FLG G +Y I +++ YG L AY +VF ++A FPL P D Y +Y+ LFA++V+P+S LEL EQ S+Q+ L+ CR+ + M+ + + A E F +Q EP+G PL+R + LPI
Sbjct: 29 VCACFTLNYLIGTGFLTLPWAFERAGILLSMIAMCIICFVSNIGVDFIVTSCARAEVLMSYRKRTGHSYKEEGGVEERPKKMTETTGLLLSQQIHTIGEEASSVNTKELTSQNSGDEVTPSMGYESDDDDKSNASDNNKNLLVVQGKHRYELTELCKIFLGDTGLKVYGISVALDCYGFLWAYASVFGAAMAHSFPLFGPGVDC-YHMYVILFAIIVVPMSFLELAEQASMQIFLSGCRIACILFMIITPVLAALFESEGNMKDSIQPIAHFDDQTEPIGSPLFRLSKIHEMLPI 322
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|290987277|ref|XP_002676349.1| (predicted protein [Naegleria gruberi] >gi|284089951|gb|EFC43605.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 122.094 bits (305), Expect = 1.711e-28 Identity = 75/228 (32.89%), Postives = 120/228 (52.63%), Query Frame = 0
Query: 24 EDSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDL------PLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLP-------------APHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMV 232
S+++ +G VA F VNYI+G G L +P + G+++ V L + + + +++LE+ RA F + + + V R+ S +L L +R+YEM LC+LFLG GK++Y I L Y+YG+L +Y TVFA S+A+ PLP + D Y +Y+G++A++VIP++CL LTEQ VQ+ L R + +A M+
Sbjct: 45 NKSNNQAHTYGSFVAYCFCVNYILGVGVLGVPNGFQKGGTIIGPVFLLIVTIFAALVLNWILETLCRATPF-----FKEQEEESKHLQDEDVLRLDASNNLIEIGEEKDLFHFPERRYEMNELCRLFLGRFGKIIYDIALCFYLYGSLWSYSTVFAESMASHVPLPINGWYTCNVNSDNSVSCDILYKIYVGIYALVVIPMTCLNLTEQKPVQIILTIFRYVALALMI 267
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|397582930|gb|EJK52465.1| (hypothetical protein THAOC_28252 [Thalassiosira oceanica]) HSP 1 Score: 109.768 bits (273), Expect = 1.660e-23 Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 0
Query: 125 PLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHAD---ATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMV-------GSVLAACAHTGESFP--EQQEPV----GIPLWRWDGMPVFLPI 269
P VK RK+E+ LC++FLG GK +Y+ LS+Y+Y AL AY VF++++A FPLP D +Y VY FA +V+P+SCLEL EQ++ Q+ L+ CR MV MV GS+ + G P E + P+ G PL+R GM LPI
Sbjct: 204 PAKFLVKNRKFEINALCRVFLGRRGKDVYISFLSMYLYCALWAYAAVFSSAMARQFPLPVGGVDVESGSYVVYAAAFAFVVVPMSCLELHEQVTAQVLLSICRFNMVFLMVWTSSDCAGSLNRRSNNDGVPDPSEEDETPIISGGGAPLFRPSGMHKMLPI 364 HSP 2 Score: 65.4698 bits (158), Expect = 2.027e-8 Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 0
Query: 25 DSSSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAE 92
D S + GF VA FT+NYI+GTGFLTLP+A Q G VL+ + L + L+++AKD++LE+ ARAE
Sbjct: 43 DPSKSRGGFSPFVAFCFTINYILGTGFLTLPWAFVQGGLVLSTLLLLVVCVLADVAKDFILETIARAE 110
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|290977355|ref|XP_002671403.1| (predicted protein [Naegleria gruberi] >gi|284084972|gb|EFC38659.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 92.8189 bits (229), Expect = 8.450e-18 Identity = 68/261 (26.05%), Postives = 116/261 (44.44%), Query Frame = 0
Query: 33 FGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARA-----ELIENPSCFLTEGQAGGIVTPALVRRIHISQDLP---------------------------------LLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLP-----------------APHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAA 238
+ VA + VNYI+G G L +PYA + G ++ + L + L+ + ++LE+ R+ E E + + + P + + ++ + ++KYEM LC L LG+ GK++Y L++ +YG L A T+FA S+++ PLP + + DA Y +Y+G+FA+ VIP++CL LTEQ VQ+ L R + + MV + L +
Sbjct: 65 YNSFVAYCYCVNYILGVGVLGIPYAFQKGGLLMGPIFLLIVTLLAGMVLVWILETLCRSVPFFKEKEEQKKDYKMLSASSSVSLPTVESSASVDSNINAVEEEETSTTPPDDKKETKQVDTTSIATEEGTRIEFPFPEKKYEMNELCALLLGWPGKIIYEGALALCLYGNLWALSTIFAESMSSNVPLPVGPNNYNWFTCNVYTDGSSNCDALYKIYIGVFALFVIPMTCLNLTEQKIVQIFLTIFRYVALTLMVVTTLVS 325
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|196008315|ref|XP_002114023.1| (hypothetical protein TRIADDRAFT_58063 [Trichoplax adhaerens] >gi|190583042|gb|EDV23113.1| hypothetical protein TRIADDRAFT_58063 [Trichoplax adhaerens]) HSP 1 Score: 92.8189 bits (229), Expect = 1.147e-17 Identity = 65/235 (27.66%), Postives = 114/235 (48.51%), Query Frame = 0
Query: 27 SSKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHIS-QDLPLLLT---------VKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPA-----------------PHADA---TYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACM 231
+ + +G + + VNYI+GTGFL +PY G++ + L +++ S + + LE+ +RA+ IE S E ++ + + S + P T + +RK+E+ LC LFLG K++YM+ L +Y+ A ++ TV A++ ++ P P A +Y + G+FAV+V+ LSCLE+TEQ +Q+ + R ++V M
Sbjct: 3 AEEASNYGVFIGYLYLVNYILGTGFLGIPYVIHHGGTIAGCLTLLTISFFSCLTSIWTLETISRAQAIERTSSAQEEEVTKKLINAEDCQASYDSIEQYPNNTTNNNIISYGQMSRRKFEITELCNLFLGDKAKIVYMLVLFVYLALACWSFTTVAASTWSSNIPFGNGSSLRQCTQEDFQDRIIPEAGGCLNSYRLCAGIFAVIVLSLSCLEVTEQKIIQIIMGILRFVVVLFM 237
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|673053171|ref|XP_008880546.1| (hypothetical protein H310_14459 [Aphanomyces invadans] >gi|574463729|gb|ETV90789.1| hypothetical protein H310_14459 [Aphanomyces invadans]) HSP 1 Score: 90.8929 bits (224), Expect = 2.372e-17 Identity = 73/230 (31.74%), Postives = 108/230 (46.96%), Query Frame = 0
Query: 36 VVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIH-ISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGS-VLAACAHTGESFPEQQEPVGIPLWRWDGM 263
+V ++T+N I+G G LT+PYA G VL + + M+ LS + + E+ R RR+ + QD E+ TLC+++LG G LY + L Y Y L+A+ VF + + FP T G L L++ +VIPLSC++LTEQI VQ+ L S R + M GS +L H+G S P +PL +DG+
Sbjct: 28 LVCYSYTLNTILGVGCLTIPYAVYHAGLVLGLSTVVVMSFLSYLTVLWTCETLERHR-----------------------RRLQLVPQD-------NSDDVEVVTLCRVYLGSTGAHLYQVALYSYGYAVLVAFAQVFIAATSTQFP-----GLTTTGAVL-LYSAVVIPLSCVDLTEQIVVQLFLTSIRFVAFTLMGGSLLLTRSIHSGHSDP-------LPLVDFDGL 214
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|551650846|ref|XP_005828205.1| (hypothetical protein GUITHDRAFT_52232, partial [Guillardia theta CCMP2712] >gi|428172315|gb|EKX41225.1| hypothetical protein GUITHDRAFT_52232, partial [Guillardia theta CCMP2712]) HSP 1 Score: 90.8929 bits (224), Expect = 2.623e-17 Identity = 63/196 (32.14%), Postives = 106/196 (54.08%), Query Frame = 0
Query: 38 AVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAE---LIENPSCFLTEGQAGGIVT-----PALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLP---APHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALAS 222
A TVN ++G G + LPYA G+V++++++F +S + Y++E +R + E PS +TE AG + PA+ R + + YEM LC +FLG +G+ L+ +CL +Y G+L Y TVF +S++ + PLP P + A V+L FA+L++ ++C++L +VQ L+S
Sbjct: 1 ATILTVNMVVGAGVVGLPYAFYHAGAVISLISMFIATVMSAMTMGYLVEGGSRGRDDAIAELPSD-VTELDAGPSSSKHEARPAVDREVAM--------------YEMSELCGIFLGGYGRKLFELCLLLYTIGSLWLYATVFGSSLSLVVPLPLGDRPTSIAWCLVFLCFFALLMVAMACMDLAALKNVQFLLSS 181
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|669159050|ref|XP_008615087.1| (hypothetical protein SDRG_10851 [Saprolegnia diclina VS20] >gi|530733446|gb|EQC31688.1| hypothetical protein SDRG_10851 [Saprolegnia diclina VS20]) HSP 1 Score: 90.8929 bits (224), Expect = 4.316e-17 Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 0
Query: 36 VVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAA 238
+VA +FTVNYI+G G L +PYA G + + L ++ LS I +V E++ RA E A T L +H E+ TLC+ FLG+ G +Y I L +YG L+ Y VF NS+A+ A A + V + +F ++V+PLSC++L EQI VQ+ +A R + + M+ S A
Sbjct: 127 LVAYSFTVNYILGVGSLGVPYALYHAGLLFGSIMLLIVSWLSYITVMWVSETTVRAR----------ELDAMNTHTKLLADPMHFP--------------EVTTLCERFLGHIGARVYQISLLGLMYGGLIGYAQVFVNSIASQL---ASFAMSNVAVAI-VFGLIVVPLSCVDLNEQIHVQVGMAVLRFVALLTMIVSAAVA 301
BLAST of EWM28269.1 vs. NCBI_GenBank
Match: gi|813218292|ref|XP_012210524.1| (hypothetical protein SPRG_15926 [Saprolegnia parasitica CBS 223.65] >gi|641524102|gb|KDO18763.1| hypothetical protein SPRG_15926 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 90.5077 bits (223), Expect = 4.999e-17 Identity = 68/203 (33.50%), Postives = 101/203 (49.75%), Query Frame = 0
Query: 36 VVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAA 238
+VA +FTVNYI+G G L +PYA G + + L ++ LS I +V E++ R E A T LV +H E+ TLC+ FLG+ G +Y I L +YG L+ Y VF NS+A+ A A + V + +F ++V+PLSC++L EQI VQ+ +A R + + M+ S A
Sbjct: 82 LVAYSFTVNYILGVGSLGVPYALYHAGLLFGSIMLVVVSWLSYITVMWVSETTVRGR----------ELDAMNTHTKLLVDPMHFP--------------EVTTLCERFLGHCGARIYQISLLGLMYGGLIGYAQVFVNSIASQL---ASLAISNVAVAI-VFGLIVVPLSCVDLNEQIHVQVGMAVLRFVALLTMIVSAAVA 256 The following BLAST results are available for this feature:
BLAST of EWM28269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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