rna2538, rna2538 (mRNA) Nannochloropsis gaditana

Overview
Namerna2538
Unique Namerna2538
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length936
Alignment locationCM002459.1:612796..614050 +

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Properties
Property NameValue
Productamino acid transporter
Orig transcript idgnl|cribi|Naga_100004g182.9200.mrna
Orig protein idgnl|cribi|Naga_100004g182.9200
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:612796..614050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g182gene2426Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2538rna2538-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28269.1cds2530Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2538 ID=rna2538|Name=rna2538|organism=Nannochloropsis gaditana|type=mRNA|length=936bp
ATGCGTGCGTTCACAAGTATCTTCCATTGCCGGGAGCATAAGTCCACAAA
AGCCTACTTTTATCAGACCTGGGAGGCCCGCATGCACGACCCGTCCCGCA
CGAGACTGTGCTCGGGGCTCTGCAGTGACGGATTGATGCTCGTATCGATA
CCACCGAAGACCACACTAGGGCAATCACTCGGTCTTGCCATCAGTAGACG
TCGCACTAAATCTTGCAAGGGGAGCAGCTGCGCTTCCATCAAAGTCTCGA
GGCGCCGCGCTGCCTCGTTCAAACCACTGCCAGCTGTGTCTTGGAATGCC
TTCACAACCAGGTCACTGTTCTCAGTTCCTATGCTGACAGTTGTCGGTGC
TGAAGGGTCGTGGAAGGCCACAGGGAAAAAAGGGGTATTCGCCTCAATAT
TTACCCCTGCAGCAAACCGAAAATTACCGAGCTCTCCATCTAGGGTCAAC
TGCGCCATGACCTTCACAACGGCATCCCTCTTCTTCCCTTCGAGTATCTC
TTTATCGCATCCATCCGTTAGCTCGCAGCATTGCAAGCCGGCCGAGGCGC
TTATGCGGCTTGAAGCTTTCAGCAACACTACAAAACTCCAAGCCAGTGGC
CTCGCAAGCTCGTGCGATGCGCGAAGCCCTTTCTGCTACAGTGGCGGACT
TTCCACTGTTAGATGCACGGGGATCCTCGATGCCTGCATCCTCAAAGCAG
CCAATCCAGTCTTCGAAGGAATTAGTTGCGATGCGAATGGTCTGAACTTC
CATGCCGTTACGGGAGTCTTCCTCGATCCCCTTCTTGAGCTCGCATCCCA
AGGCACTGGCGCGCAAGAACGCGTCCTCGATGTCATCTATGCTTTCGATC
TTGATACCAATTGTCAACGCCCTGATTTTCATCCTTGTGCTAGGCCTGTA
GAGACATACATGATGCGAACAGTCAAGGACCGATAA
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protein sequence of rna2538

>rna2538-protein ID=rna2538-protein|Name=rna2538|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MEERNDEKALLSPLRLRGLRVAVEDSSSKKKGFGFVVAVAFTVNYIMGTG
FLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCF
LTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGK
VLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAV
LVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGESFPEQQ
EPVGIPLWRWDGMPVFLPIAC
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mRNA from alignment at CM002459.1:612796..614050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2538 ID=rna2538|Name=rna2538|organism=Nannochloropsis gaditana|type=mRNA|length=1255bp|location=Sequence derived from alignment at CM002459.1:612796..614050+ (Nannochloropsis gaditana)
tcgccgttcGCACGCGACTTGCACAATGTTGCATATCGGTAGGTGGAATG
CCTGCCTGCATACCAGAGGGAGCTACGGCATCAACGGGCTCGGAAGTAAA
TCGAGATGGTCACGGGAGAGTCGCGCTGAAAGAACTCGATATTTTTGACC
TTCACTCCGGGGTGGAGAACCAAGGCCCGGCCAGACTTCCACATcgcgaa
aagggaggacaaagtGACGGTCTCTGATACCCCGCGCATTCAGCCAATTA
AGACATCGTACGTCAGAAATAGGATCAGTGAAGCGTGCACGGACATCATA
TTTTGCCCTTGATATCTTATGCCTTGACCGTCCAAATATCCAAATAAATG
CCACTCGACCCTTTTTAGGCTCGGCTTGAAGCGACTGGAGCTCTCTACTG
AAAGCCGAGGCCAAGGAAATCGCACTCCTCGACCATATCTTTATGGAGGA
ACGGAATGACGAAAAAGCTCTACTATCGCCCTTACGCTTGCGTGGACTCC
GAGTGGCGGTGGAAGACAGTAGtagcaagaagaaaggattTGGGTTCGTA
GTAGCGGTGGCCTTCACAGTGAACTACATCATGGGGACTGGCTTTTTGAC
CTTGCCTTACGCGACAGCACAAACGGGATCTGTCCTTGCCATCGTCGCCC
TATTTTCAATGGCTGCTTTGAGTAATATAGCCAAAGATTACGTGCTGGAG
AGCAGTGCACGGGCTGAACTTATTGAAAATCCAAGCTGTTTTCTTACGGA
AGGCCAAGCAGGCGGGATTGTGACACCTGCCCTAGTCCGGCGAATACACA
TCTCGCAGGACTTGCCATTGCTATTGACTGTAAAGAAGCGTAAGTATGAA
ATGCCCACGCTCTGTCAACTGTTTTTGGGCTACCATGGTAAGGTGCTCTA
CATGATATGCCTTTCCATCTACATCTATGGAGCATTGCTGGCGTACGGCA
CAGTCTTCGCGAATTCGGTGGCGGCTatgttccccctccccgcccctcac
GCCGATGCCACTTATGGTGTGTACCTCGGCCTCTTCGCAGTCCTGGTAAT
ACCGCTGAGCTGTCTGGAATTAACAGAGCAGATCTCAGTCCAaatggcct
tggcctcctgtCGGCTACTCATGGTCGCCTGCATGGTGGGCTCCGTGCTG
GCTGCCTGCGCCCACACCGGTGAGTCGTTTCCCGAGCAGCAAGAGCCGGT
GGGGATCCCGCTCTGGAGGTGGGATGGCATGCCTGTGTTCCTGCCCATCG
CCTGC
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Coding sequence (CDS) from alignment at CM002459.1:612796..614050+

>rna2538 ID=rna2538|Name=rna2538|organism=Nannochloropsis gaditana|type=CDS|length=813bp|location=Sequence derived from alignment at CM002459.1:612796..614050+ (Nannochloropsis gaditana)
ATGGAGGAACGGAATGACGAAAAAGCTCTACTATCGCCCTTACGCTTGCG
TGGACTCCGAGTGGCGGTGGAAGACAGTAGtagcaagaagaaaggattTG
GGTTCGTAGTAGCGGTGGCCTTCACAGTGAACTACATCATGGGGACTGGC
TTTTTGACCTTGCCTTACGCGACAGCACAAACGGGATCTGTCCTTGCCAT
CGTCGCCCTATTTTCAATGGCTGCTTTGAGTAATATAGCCAAAGATTACG
TGCTGGAGAGCAGTGCACGGGCTGAACTTATTGAAAATCCAAGCTGTTTT
CTTACGGAAGGCCAAGCAGGCGGGATTGTGACACCTGCCCTAGTCCGGCG
AATACACATCTCGCAGGACTTGCCATTGCTATTGACTGTAAAGAAGCGTA
AGTATGAAATGCCCACGCTCTGTCAACTGTTTTTGGGCTACCATGGTAAG
GTGCTCTACATGATATGCCTTTCCATCTACATCTATGGAGCATTGCTGGC
GTACGGCACAGTCTTCGCGAATTCGGTGGCGGCTatgttccccctccccg
cccctcacGCCGATGCCACTTATGGTGTGTACCTCGGCCTCTTCGCAGTC
CTGGTAATACCGCTGAGCTGTCTGGAATTAACAGAGCAGATCTCAGTCCA
aatggccttggcctcctgtCGGCTACTCATGGTCGCCTGCATGGTGGGCT
CCGTGCTGGCTGCCTGCGCCCACACCGGTGAGTCGTTTCCCGAGCAGCAA
GAGCCGGTGGGGATCCCGCTCTGGAGGTGGGATGGCATGCCTGTGTTCCT
GCCCATCGCCTGC
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Synonyms
Publications