EWM28231.1, cds2499 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|585110576|gb|EWM28231.1| (ferredoxin [Nannochloropsis gaditana]) HSP 1 Score: 290.041 bits (741), Expect = 2.798e-99 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 Query: 1 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA Sbjct: 1 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|242038653|ref|XP_002466721.1| (uncharacterized protein LOC8056764 [Sorghum bicolor] >gi|241920575|gb|EER93719.1| hypothetical protein SORBI_3001G147400 [Sorghum bicolor]) HSP 1 Score: 119.398 bits (298), Expect = 8.648e-32 Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0 Query: 40 GHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 +KVTIE DG + + VE +++L ALDEG+E+PHDC+LG C+ C A+L+SG VDQ+ L D V+ QGYAL C +YP+SD TIR IPEDEL+ Q A A Sbjct: 47 AYKVTIEH-DGASRVVEVEEDETILSRALDEGLEVPHDCKLGVCMTCPARLVSGVVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLKVQLATA 147
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|1045399857|dbj|GAU18842.1| (hypothetical protein TSUD_228320 [Trifolium subterraneum]) HSP 1 Score: 119.013 bits (297), Expect = 1.172e-31 Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 0 Query: 24 PR-GLSNHQS--LTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 PR G +HQS LT +KV IE +GK+ E+ VE +++L ALD G+ +PHDC+LG C+ C A+LISGTVDQ+ L D V+E+GYAL C SYP+SD IR IPE+EL+ Q A A Sbjct: 31 PRLGSGSHQSPPLTFTVRSSYKVVIEH-EGKSTELEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCVIRVIPEEELLSMQLATA 150
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|661897350|emb|CDO99062.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 118.242 bits (295), Expect = 2.135e-31 Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 0 Query: 24 PRGLSNHQSLTRNGLFG--------------HKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 PR +N +L +GL+ +KV+IE +GKT E+ VE +++L ALD G+ +PHDC+LG C+ C A+L+SGTVDQ+ L D V+E+GYAL C SYP+SD IR+IPE+EL+ Q A A Sbjct: 17 PRNQANVPALQLHGLWSRPRLNRHLSCTARSYKVSIEH-EGKTTELEVEPDETILSKALDNGLPVPHDCKLGVCMTCPAQLLSGTVDQSEGMLSDDVVERGYALLCASYPRSDCKIRTIPEEELLSLQLATA 147
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|674250968|gb|KFK43733.1| (hypothetical protein AALP_AA1G165600 [Arabis alpina]) HSP 1 Score: 118.627 bits (296), Expect = 2.150e-31 Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 0 Query: 40 GHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 G+KV +E DGKT E+ VE +++L A+DEG+++P+DC+LG C+ C AKL++GTVDQ+ L D V+E+GYAL C SYP SD I+ IPEDEL+ Q A A Sbjct: 48 GYKVVVEH-DGKTTELEVEPDETILSKAIDEGLDVPYDCKLGVCMTCPAKLVTGTVDQSDGMLSDDVVERGYALLCASYPTSDCHIKMIPEDELLSLQLATA 148
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|1035898350|gb|OAY27951.1| (hypothetical protein MANES_15G029300 [Manihot esculenta]) HSP 1 Score: 117.857 bits (294), Expect = 2.953e-31 Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 0 Query: 20 LPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 LP+L +SL + + +KV IE +G++ E+ VE +++L ALD G+ +PHDC+LG C+ C AKLISGTVDQ+ L D V+E+GYAL C SYP+SD IR+IPEDEL+ Q A A Sbjct: 23 LPSLKLNYRAGRSL-KTTVRSYKVLIEH-EGQSTELEVEPDETILSKALDSGLPVPHDCKLGVCMTCPAKLISGTVDQSEGMLSDDVVERGYALLCASYPKSDCHIRTIPEDELLSLQLATA 142
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|351725193|ref|NP_001236060.1| (uncharacterized protein LOC100500300 [Glycine max] >gi|255629972|gb|ACU15338.1| unknown [Glycine max] >gi|734398145|gb|KHN30476.1| Ferredoxin-3, chloroplastic [Glycine soja] >gi|947130001|gb|KRH77855.1| hypothetical protein GLYMA_01G238000 [Glycine max]) HSP 1 Score: 117.857 bits (294), Expect = 3.016e-31 Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 0 Query: 14 STVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 ST P PR L R + +KV IE DG++ E+ VE +++L ALD G+ +PHDC+LG C+ C A+LISG+VDQ+ L D V+E+GYAL C +YPQSD I+ IPEDEL+ Q A A Sbjct: 26 STASQLNPPRPRPL-------RVSVRSYKVVIEH-DGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDDVVERGYALLCAAYPQSDCHIKIIPEDELLSLQLATA 145
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|298712382|emb|CBJ33166.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 117.857 bits (294), Expect = 3.058e-31 Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 0 Query: 41 HKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFA 139 H+VTIE +G + + V+ ++LEAALD I+LPHDC+LG CL C +K++SG VDQ+ TL+DSV GYALTCC+Y +SDVTIRS+ EDEL+ QF+ Sbjct: 49 HQVTIE-HEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 146
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|502159000|ref|XP_004511360.1| (PREDICTED: ferredoxin, root R-B2 [Cicer arietinum]) HSP 1 Score: 117.472 bits (293), Expect = 4.380e-31 Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 0 Query: 24 PRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 PR S + LT +KV IE +G+T ++ VE +++L ALD G+ +PHDC+LG C+ C AKLISG+VDQ+ L D V+E+GYAL C SYP+SD R+IPEDEL+ Q A A Sbjct: 31 PRLGSGSRPLTVTVRSSYKVVIEH-EGQTTQLEVEPDETILSKALDSGLSVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVERGYALLCASYPRSDCHFRTIPEDELLSMQLATA 147
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|357480873|ref|XP_003610722.1| (2Fe-2S ferredoxin superfamily protein [Medicago truncatula] >gi|355512057|gb|AES93680.1| 2Fe-2S ferredoxin superfamily protein [Medicago truncatula]) HSP 1 Score: 117.857 bits (294), Expect = 4.550e-31 Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0 Query: 40 GHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141 +KV IE +GKT ++ VE +++L ALD G+++PHDC+LG C+ C A+LISGTVDQ+ L D V+E+GYAL C SYP+SD IR IPEDEL+ Q A A Sbjct: 51 SYKVVIEH-EGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCHIRVIPEDELLSMQLATA 151 The following BLAST results are available for this feature:
BLAST of EWM28231.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|