rna2479, rna2479 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2479
Unique Name	rna2479
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1733
Alignment location	CM002459.1:490611..493550 -

Link to JBrowse

Properties


Property Name	Value
Product	ankyrin repeat and btb poz domain-containing protein 1 isoform 2
Orig transcript id	gnl\|cribi\|Naga_100004g121.9083.mrna
Orig protein id	gnl\|cribi\|Naga_100004g121.9083
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:490611..493550 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g121	gene2372	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28152.1	cds2471	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2479	rna2479-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:490611..493550-
coding sequence from alignment at CM002459.1:490611..493550-

mRNA sequence

>rna2479 ID=rna2479|Name=rna2479|organism=Nannochloropsis gaditana|type=mRNA|length=1733bp
ACAGATGCTGTCGTGTACGTCGTGGTACGCTTGGAGAAACATAGTGCGTG
AAGGATTGTAGCTGAGGCCGTTCAACAGCGGGCAGCACACTCTTCGCGCC
CGCCTCCGGCGACGAGCCTGCTCAAGAATATGAGACGCCAAAAAACACGA
GAATAGACAGTGAGCTGTCGACTTTCGTGCTACATGCTTCGTCCGTCGTA
GATTAGCCTTCTTCCTCCGTCCCTTTGTGATTCGGCCCTGCGTTCTTTTT
GCCTTCATCAGGATGGTTAGGACCCGACAGAGCAACGGGGGAAGGAGAAG
TGCTTTGTCTATTGAATTGAAGGCTTCACTTCCACGAGAAGTCGGCAGCG
CGCTTTTTGTATTCATTTCGTTCCTCTTGATTTATATCTTTTGGTCTTTT
GAGATGAGGCGGCGGCATTCGGGCCGCTTGCTTTTTGTCTTCTGGGGCGA
TGTAGCTACTATCTCCTCATCAGTGCTTTTACTTAGCAGGAATGATGGCA
GATTATTATAATTTCTGTGGTGAACGCAAGTAAAGAAGGAGTTGTCGTCG
ATAGGAACAACGGGATATCGTGCAGAGTTAGAGTATCGCATCGTGAGGTG
CATTTTGTAGTCAACACCATGCTAAACAACTCAATGCTAGACATCTTGCT
CTTACAATCAGCAGGCTAAATGAGATCTTCACGTGGTGCTCAAAGCTCAA
GCTGACCATGGTTCCCGTTTTACCTCTCACTGCAACGGGACAGCCTACTA
CATCGCTTTTATCCTCTCTAGGAAGACGTTTGTCTGTCGCCTCGCGCGCC
TCGTTGCTACATGGCCGCCGCGCGGGGAGGAGCACATCAAGGGAGGGAAC
CACGCCGCGACAATTGCTGCAAGAGGGGAGCAAGCAGGGGCACCGCATCA
TGGGAGTAGATGCAACGAAAGTCGGAAGAATTGGTGACGAAATAGACGGC
GCCACTCGTAGCGAGAACAGCAACGACAAATTACCTCCGTCAAGCTCTCC
CTCTCAAGCTGCATGGCGTGAGCAACTGCGCAAGACCCTACGCGGCAAGC
TTATGTTGGTAACCAATGCCTGGACGGCCACTTTGATACTCACAATCCTC
CTTGCCGTGGTTTTCCGCGCATTACAGCCGACAGAAGAGCCTGGGCTGGG
CGTCACTCACTATGCTTGGCGTGGAGATCCTTCGGATCCGAATCGGCTGA
GCTTGGAAGAACTGGATTTGGATGTTCGCGGGATAGGTCGTTTCAAGATG
GAATTTGGTCCCAGCAAAGTGCAGCTTTACCCCATGGAGGCTGATGAAGA
GGTGAGGGTGGGGCATCGGGATGAGGCTGCTCTTGCTGATTTTTTGCTCG
CAGAGATATCTATGCCGAGCTGGAACGTGACCTTAGGGCATGATTTTACA
ATCGTTTCTGCTGTAAAAGCCAGTACATTTTTCTCTGCAAGGCGTTCGCC
GTTGACGAGCAAAAGAGAGCAGGTAATCTTAAGTGGAAACTTTCATGGCT
ACGTAACTTTGTTCGCGTCGTTGCCCTCACGCATCTTTTTGAAGTGCTAC
CTTCAAACCGATTTGGCCAGTGTGGAGGGTTCTCGATGTGAATCCCAATA
TTTGCCGGACATGAGACGTGGCGGGAGGTAGAGAGAGAAAATGATGTGAA
GAGGAAGAGATAGGTTTGGAAAAAGCATGTACAAAGTAATTACGATGGAG
ATTTTGGTGCTCTTGCCAGGAAGAATATATGCT

protein sequence of rna2479

>rna2479-protein ID=rna2479-protein|Name=rna2479|organism=Nannochloropsis gaditana|type=polypeptide|length=595bp
MAGNPATSNITMAFPPHLDVWRAAREGNLQLLTFLIETKGHNVNVVNEVD
ASPLYYAALCGHVDCVKYLLLMGAVADEGTFMGERCFFAALNDPLRHLLR
CSKMTRAYREPFLESLRFMYENKEVWWPDVAFVCRATAFDPKWKASEGVG
SAGGVQEKSGLFCHQVILRARSAFLIQEFNKRRVETRCGRRGGLGVAWGT
ASSLSIPLLHSHKAFACILQYLYCSRLEMPLYLLDDGIRISRILHLPGLG
LELQRASDKIAMARERGIQCHRELKSLKYHSSSKHSAFYVSRQRRQEMLI
VEPKKETLIEHFKLLAEEVVTRFPEDADVVLFTGDGKSFALHRVILAARS
PYFRTMLRSGFKEGQQAGRLIVPHILPTMEVSAETRIFSSEINYKGSKRV
MGEKKDLEKKKPSNQDQVEEKGANACCDASEPQALPSIHLSLSGEALRRV
IEFMYCDEPLSPLEVPLVFDVLDAATLFMLPGLRNYCVSALMEHVDKIDI
FSLLEVARLYDLPRLENFVVERMAINLEKVVEADKFRLLVEESAATVKAR
EERDSIPLIDDIRYFVCRLHRFDQDVQEMKIALIESLLERLGLKT

mRNA from alignment at CM002459.1:490611..493550-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2479 ID=rna2479|Name=rna2479|organism=Nannochloropsis gaditana|type=mRNA|length=2940bp|location=Sequence derived from alignment at CM002459.1:490611..493550- (Nannochloropsis gaditana)
GAGCGAATGACAAAGTAGGAAGGTGGGCTGAATGTACTCGCCGACCGCCG
TCACTCGTACACTTGTAGTTGTTAGCGAAGCTCTGTAGGGCAGATGTGGG
AGTCGGTTTGCACGCTCTGGTAAGCAAGGGATGTAGTGGATGTGTGCTTG
CTCACAAACTCATAAACCCGGGTCGGGGGGGAGCATGAATGAGGGAGAAG
GACGGCTTTTGAGGGTACAGCGTCGGGCTGCCCTTAGGTCGCCCTCGCGA
CCCAGGCCGCTGTTGCCTTCCCTGTGAGAGTGTGCGATTTGCACGTCGGC
TGGTGCCGCGATTCAAGCATGTTATAATCAGTAACAAGAAGACTTTTGAC
GTCGCACATCCCTAACGCTTCATAAGCGCAAAATTTTCCGTCCCTAGTGG
ACGCGAAGAGAATGTTTACCTAGTACTCCAATCTCCGTCTGGCTGTTATC
AACGTGCTTTGCCCATCTCTATGACAACATGCTTCCTATTTGATTTTTAT
ATCAAATGCGGCCATAATTCTTGCTACAAGTCACCCTGATCTTGGTAAGG
TAGCAAGCCAGGCATCTTCGGCCCAATTCACGAGCTTGAAGGCCCCTAAT
AGTAGGGCGTTGAGCGGTCTTTCACGATCCGGGCTCGGGACGACATGGAT
TGTCCTTTCCCGTGCGTCACTTACCAGACAAGAGAGGCGATTCTTCTACC
TAAAGTTACGCTTTATCATTAAGCTAGGATAAGCGGATCGCCTCGTTCCC
CTGAGGCGCGGTCTCGAAACCAAATCTAACGAGTATCTTATTTTCCAAAT
ACGCCACTTAGAATGTCGCAGTTACGGCTAACAGGCCAAAACTATCGGCA
CAATTCCGCCCCAAGCATAGTGGTCTTCTTGGCGCTAACTTTTGTTTTTT
TGTCGTAGGGGAGGCCAGAGGCCCATACGCCTCACTAAATAAATTTACCT
TCGATGCGAAGGCATGGCTTTCCGTGTTCCTACTCCCTCACTAATGAGCT
CCTGAATGAAGCAGCGCAACTTGGATAATAATATTCCTTTTCAGACAATC
CGCCGCGTCACTTATTGGAATCTGTATCTGTGTATCACCAGAAATGGCCG
GCAATCCCGCTACTTCGAATATTACCATGGCATTTCCGCCTCACCTCGAT
GTATGGCGAGCTGCGAGGGAGGGCAACCTACAATTGCTGACTTTCTTGAT
TGAAACCAAGGGTCACAATGTTAATGTGGTAAACGAGGTGGATGCCTCAC
CTTTATACTATGCAGCGCTTTGCGGCCACGTAGACTGCGTCAAATACTTG
CTGCTCATGGGCGCGGTCGCAGACGAAGGAACGTTTATGGGAGAACGATG
CTTTTTTGCGGCGCTCAATGACCCTCTGCGTCATTTGCTTCGATGTAGTA
AGATGACGCGCGCTTATCGCGAACCTTTTCTAGAAAGTTTACGCTTTATG
TACGAAAACAAGGAGGTGTGGTGGCCTGACGTAGCTTTTGTGTGTCGTGC
CACGGCCTTTGACCCAAAGTGGAAAGCCAGCGAAGGTGTAGGCAGCGCGG
GCGGTGTTCAGGAGAAGTCAGGTCTCTTTTGCCATCAAGTTATTTTGCGC
GCCCGCTCAGCATTTCTCATCCAAGAGTTCAATAAGCGGCGCGTGGAAAC
ACGATGCGGTCGGCGTGGGGGCCTCGGGGTCGCATGGGGCACCGCATCGT
CTTTATCCATTCCTCTTTTACACTCGCACAAGGCGTTCGCATGCATATTA
CAGTACCTTTACTGCTCACGGTTAGAGATGCCTCTCTATCTTCTCGACGA
CGGCATACGCATCTCTCGGATCCTGCATTTGCCTGGACTGGGACTAGAGC
TGCAACGAGCATCGGACAAGATTGCTATGGCTAGAGAAAGGGGGATACAA
TGCCACAGGGAACTGAAAAGTTTGAAATACCATTCTTCCTCTAAACACAG
CGCATTTTACGTGTCTCGGCAGCGACGACAAGAAATGTTAATTGTTGAGC
CTAAAAAGGAGACACTGATAGAACACTTCAAATTGCTAGCCGAGGAAGTC
GTCACTCGCTTTCCCGAAGACGCCGATGTAGTCCTTTTCACGGGGGACGG
AAAGAGCTTTGCTTTGCACCGAGTTATCCTCGCGGCGCGGAGCCCTTACT
TCCGCACCATGCTCAGATCGGGTTTCAAGGAGGGGCAGCAAGCAGGCAGA
CTCATTGTACCGCATATTCTTCCGACGATGGAAGTATCTGCGGAGACGCG
CATATTCAGCTCGGAGATAAATTACAAGGGATCCAAGCGTGTCATGGGCG
AAAAAAAGGATTTGGAGAAGAAGAAACCTTCAAACCAAGATCAGGTCGAG
GAGAAAGGGGCAAACGCTTGCTGTGATGCGAGTGAGCCCCAGGCGCTCCC
TTCTATCCACTTGTCTCTGTCGGGGGAGGCCTTGCGGCGGGTGATTGAAT
TCATGTATTGCGACGAACCCCTCAGCCCGCTGGAGGTCCCCCTGGTTTTT
GACGTGTTAGATGCTGCCACCCTGTTTATGCTCCCCGGTCTTAGAAATTA
CTGCGTCTCTGCCCTCATGGAGCACGTCGACAAGATCGACATTTTCTCGC
TCTTGGAGGTTGCCCGTTTGTACGACCTACCACGGCTGGAAAATTTTGTG
GTCGAGCGTATGGCCATAAACCTCGAGAAAGTCGTAGAAGCTGATAAGTT
TCGACTCCTCGTTGAGGAGAGTGCTGCCACGGTCAAAGCGCGGGAAGAGA
GAGACTCTATTCCTCTGATTGACGATATCCGATACTTTGTCTGTCGACTT
CATCGTTTCGATCAAGACGTTCAAGAAATGAAAATAGCCTTGATTGAAAG
CCTCCTAGAACGGTTGGGGCTTAAAACTTAGAGAAAATAGTCCTGAGAGG
CAGCAGTGTACAAAAAGCATATATTCTTCCTGGCAAGAGC

Coding sequence (CDS) from alignment at CM002459.1:490611..493550-

>rna2479 ID=rna2479|Name=rna2479|organism=Nannochloropsis gaditana|type=CDS|length=1788bp|location=Sequence derived from alignment at CM002459.1:490611..493550- (Nannochloropsis gaditana)
ATGGCCGGCAATCCCGCTACTTCGAATATTACCATGGCATTTCCGCCTCA
CCTCGATGTATGGCGAGCTGCGAGGGAGGGCAACCTACAATTGCTGACTT
TCTTGATTGAAACCAAGGGTCACAATGTTAATGTGGTAAACGAGGTGGAT
GCCTCACCTTTATACTATGCAGCGCTTTGCGGCCACGTAGACTGCGTCAA
ATACTTGCTGCTCATGGGCGCGGTCGCAGACGAAGGAACGTTTATGGGAG
AACGATGCTTTTTTGCGGCGCTCAATGACCCTCTGCGTCATTTGCTTCGA
TGTAGTAAGATGACGCGCGCTTATCGCGAACCTTTTCTAGAAAGTTTACG
CTTTATGTACGAAAACAAGGAGGTGTGGTGGCCTGACGTAGCTTTTGTGT
GTCGTGCCACGGCCTTTGACCCAAAGTGGAAAGCCAGCGAAGGTGTAGGC
AGCGCGGGCGGTGTTCAGGAGAAGTCAGGTCTCTTTTGCCATCAAGTTAT
TTTGCGCGCCCGCTCAGCATTTCTCATCCAAGAGTTCAATAAGCGGCGCG
TGGAAACACGATGCGGTCGGCGTGGGGGCCTCGGGGTCGCATGGGGCACC
GCATCGTCTTTATCCATTCCTCTTTTACACTCGCACAAGGCGTTCGCATG
CATATTACAGTACCTTTACTGCTCACGGTTAGAGATGCCTCTCTATCTTC
TCGACGACGGCATACGCATCTCTCGGATCCTGCATTTGCCTGGACTGGGA
CTAGAGCTGCAACGAGCATCGGACAAGATTGCTATGGCTAGAGAAAGGGG
GATACAATGCCACAGGGAACTGAAAAGTTTGAAATACCATTCTTCCTCTA
AACACAGCGCATTTTACGTGTCTCGGCAGCGACGACAAGAAATGTTAATT
GTTGAGCCTAAAAAGGAGACACTGATAGAACACTTCAAATTGCTAGCCGA
GGAAGTCGTCACTCGCTTTCCCGAAGACGCCGATGTAGTCCTTTTCACGG
GGGACGGAAAGAGCTTTGCTTTGCACCGAGTTATCCTCGCGGCGCGGAGC
CCTTACTTCCGCACCATGCTCAGATCGGGTTTCAAGGAGGGGCAGCAAGC
AGGCAGACTCATTGTACCGCATATTCTTCCGACGATGGAAGTATCTGCGG
AGACGCGCATATTCAGCTCGGAGATAAATTACAAGGGATCCAAGCGTGTC
ATGGGCGAAAAAAAGGATTTGGAGAAGAAGAAACCTTCAAACCAAGATCA
GGTCGAGGAGAAAGGGGCAAACGCTTGCTGTGATGCGAGTGAGCCCCAGG
CGCTCCCTTCTATCCACTTGTCTCTGTCGGGGGAGGCCTTGCGGCGGGTG
ATTGAATTCATGTATTGCGACGAACCCCTCAGCCCGCTGGAGGTCCCCCT
GGTTTTTGACGTGTTAGATGCTGCCACCCTGTTTATGCTCCCCGGTCTTA
GAAATTACTGCGTCTCTGCCCTCATGGAGCACGTCGACAAGATCGACATT
TTCTCGCTCTTGGAGGTTGCCCGTTTGTACGACCTACCACGGCTGGAAAA
TTTTGTGGTCGAGCGTATGGCCATAAACCTCGAGAAAGTCGTAGAAGCTG
ATAAGTTTCGACTCCTCGTTGAGGAGAGTGCTGCCACGGTCAAAGCGCGG
GAAGAGAGAGACTCTATTCCTCTGATTGACGATATCCGATACTTTGTCTG
TCGACTTCATCGTTTCGATCAAGACGTTCAAGAAATGAAAATAGCCTTGA
TTGAAAGCCTCCTAGAACGGTTGGGGCTTAAAACTTAG

Synonyms

Publications