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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100004g120.9159.mrna |
Orig protein id | gnl|cribi|Naga_100004g120.9159 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002459.1 | supercontig | CM002459.1:488903..490635 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2478 ID=rna2478|Name=rna2478|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp CCGCTGTTGAACGGCCTCAGCTACAATCCTTCACGCACTATGTTTCTCCA AGCGTACCACGACGTACACGACAGCATCTGTCCTCAGTGGCAACACACTT CGTCAGGGAATTGTTTTTGCACTCCTTGTCACATTGCTATTCACATCTGC TTTTCAACCTTCTTGCTTCGCGTGCAACGCGCCCTTCGCGTGTCAACTTC AGTTGCTAGTCCTCGAGGGGGCTTCTTCTTACGAAGGCCGGTCAGTTCCA AGCTGTCAAAGCTAGTCGAGATAATTGACCTTCTACACTTGCTTGATAGT CGAGCAGCATGGCGGCTTGGTTCTCATGTGGATTAACGTGCCATTGGCAT GACAGCTTGGGCAATGGCCCTGAGTACTGCCTGACAGAGCAGATACAGCT CAGCTTACGAAGTCTTCCCTGCAACGCTCACGTATTCAATAAGATGAAGT CTTTCGACAAGGACAATACTAACACAATCTTATTTTCTGGATGTGTGTCT CTTAGTGCCTTTTTCGCCCCAGAGGCTCTCTGTCATGCCTCCACGAGGAG CGCCAGGAGTCAGGACACTTTTCCTTTGCAGGGCCAGCAGGGAATATTGG CGCGCCAGCAATCATTGCAGGAGGTATAGCTCGAGTATATCAAAGGTAAC ATCGCAGGCGCGGCGATTGCCCGTCGATGATGAACGTACCTTGAAAGATT TTCTGTCAGGATCACGGGGAAAAGAGGGCGTAGGGCTTGCTACGGCCCAC TTGCAAATCAGCCAAATGAGTGTAGCCGATGCGTCAACATCTTCCAACAA TTTTTCGCAGCCATTTGCTGTCAATCCTGAACCCAAAACCTTTACAATTG AAAGCTACGGCTGCCAACAGAACGTTGCGGATTCTGAAGTGGTGCGAGCC ATCATGGAGGGAGCTAACTTCAAGTGGGTCGAAGGGGGAAGAATTGATGG TCATTACAGCGGATGCGACATCATATTTCTCAACACTTGTGCTATACGGG ATAATGCGGAGAAGCGTATCTGGGGTCGACTCAACCATTTAAAGCATCCA GTACGCCGGTCACCAGGCACCGGTCCTTTGCCAGGTCGGCGACAGGCACG ACGAGACGGGCGAAACAAAAAGCCCATCATCGGATTGCTTGGCTGCATGG CTGAGAGGCTGAAGGCCAGGCTTTTGGAAGAGGAGGCGGTGGACTTGGTG GTGGGTCCAGACGCTTACAGGGACTTGCCCCGACTCTTGGACATTGTGGA GGCTGGCGAGAGGGGGGTCAATGTCCAGCTGTCCATGGATGAGACTTACG CGGAAATCAAGCCTGCGCGAATAAGCCCTGATCAATGCAGCGCCTTCGTC TCGATCATGCGTGGATGCAACAACATGTGCTCATACTGCATTGTCCCTCA CACGCGGGGTCGCGAGCGCTCTCGGCCGCTGAGGACAGTGGTGGAAGAAG TGCGGCGCTTGGCGGACGAGGGGGTGAAAGAGGTGGTACTTCTCGGGCAG AACGTCAACTCTTTTCACGATACTTCTACCGTCGTACTCAATGGTGGAGG AAAGTATGAGGCTGCAGAAGGATTTTCAAACCTTTATAAAAGCCGGCACG AGGCCGGCGCACGGTTCATCGACCTTTTGGATGCCGTCTCGCGGGTGGAT AAGGACATGCGGGTACGATTTACATCGCCGCATCCCAAAGACTTCCCTCT GCCCCTGCTGCAGCTCATCTCCGAGCGACCCTCACTGTGCAAGGCCCTGC ACTTGCCTGCACAGAGTGGGAGCAGCGCTGTATTGCAGCGGATGCGGCGG GGTTACACGCGGGAAGCATACCTGTCGTTAGTGCAGAGGATCAGAGAAAT TATTCCTGGGGTAGCTCTGTCGTCCGATTTTATCGCGGGCTTCTGTGGAG AGACTGAAGAGGAGCATCAACAGACATTGAGCTTGCTCAGATTGGTCGGA TACGATCATGCATTTCTCTTCTCCTATTCCCTGCGGGAGCGCACTCACGC AGCTTATCATTTTGAGGATGATGTGCCCGAATCAGAAAAACAACGGCGCC TTTCCGAGGTTATCTCTACGTTTCGCAGCATCGTAGAAAAACGCAACCGC GCTGAGATTGGGAGAGAGCACTTGGTGTTGGTCGAGGGTCCCAGCAAGCG TTCAACGCCTGAAAAGCCTACGTTAACGGGCCGGACTGATACGAACAAGC GATGCATTCTTCCAGCTCGAGAGGTTCCCGTCAGCGTTGGGGAGGAAGGC AAGCCCCTGGTGAGCTTGCAACCAGGAGACTACGCCTGGGTACGTGTCAC CGACGCCAAAGCGCAGACGCTTTTCTGTGACGAGATTTTGGGCCGCAGTA ACATACAAGAATTTGCGACCGATATTCAAAGGACTGAAAGACTCCCTCGG ATCCAAAAAGTACAAGTGTGAAGTGCGCGGTGGAAATCCTGATGGAGAAG AATTTTGTGTGTAGGAACGACGGGGGTCGAATTTCGTGGACGGATAAAAA AGGCTATGCGGGTAACTCCACACATTTCTTTGAACGTTTTTTCCAAAATT GAGAACGTAATCTGCTTTGGTTAT back to topprotein sequence of rna2478 >rna2478-protein ID=rna2478-protein|Name=rna2478|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp MVPVLPLTATGQPTTSLLSSLGRRLSVASRASLLHGRRAGRSTSREGTTP RQLLQEGSKQGHRIMGVDATKVGRIGDEIDGATRSENSNDKLPPSSSPSQ AAWREQLRKTLRGKLMLVTNAWTATLILTILLAVVFRALQPTEEPGLGVT HYAWRGDPSDPNRLSLEELDLDVRGIGRFKMEFGPSKVQLYPMEADEEVR VGHRDEAALADFLLAEISMPSWNVTLGHDFTIVSAVKASTFFSARRSPLT SKREQVILSGNFHGYVTLFASLPSRIFLKCYLQTDLASVEGSRCESQYLP DMRRGGR back to topmRNA from alignment at CM002459.1:488903..490635+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2478 ID=rna2478|Name=rna2478|organism=Nannochloropsis gaditana|type=mRNA|length=1733bp|location=Sequence derived from alignment at CM002459.1:488903..490635+ (Nannochloropsis gaditana) ACAGATGCTGTCGTGTACGTCGTGGTACGCTTGGAGAAACATAGTGCGTG
AAGGATTGTAGCTGAGGCCGTTCAACAGCGGGCAGCACACTCTTCGCGCC
CGCCTCCGGCGACGAGCCTGCTCAAGAATATGAGACGCCAAAAAACACGA
GAATAGACAGTGAGCTGTCGACTTTCGTGCTACATGCTTCGTCCGTCGTA
GATtagccttcttcctccgtccctttgTGATTCGGCCCTGCGTTCTTTTT
GCCTTCATCAGGATGGTTAGGACCCGACAGAGcaacgggggaaggagaag
tgctTTGTCTATTGAATTGAAGGCTTCACTTCCACGAGAAGTCGGCAGCG
CGCTTTTTGTATTCATTTCGTTCCTCTTGATTTATATCTTTTGGTCTTTT
GAGATGAGGCGGCGGCATTCGGGCCGCTTGCTTTTTGTCTTCTGGGGCGA
TGTAGCTACTATCTCCTCATCAGTGCTTTTACTTAGCAGGAATGATGGCA
GATTATTATAATTTCTGTGGTGAACGCAAGTAAAGAAGGAGTTGTCGTCG
ATAGGAACAACGGGATATCGTGCAGAGTTAGAGTATCGCATCGTGAGGTG
CATTTTGTAGTCAACACCATGCTAAACAACTCAATGCTAGACATCTTGCT
CTTACAATCAGCAGGCTAAATGAGATCTTCACGTGGTGCTCAAAGCTCAA
GCTGACCATGGTTCCCGTTTTACCTCTCACTGCAACGGGACAGCCTACTA
CATCGCTTTTATCCTCTCTAGGAAGACGTTTGTCTGTCGCCTCGCGCGCC
TCGTTGCTACATGGCCGCCgcgcggggaggagcacatcaagggagggaac
caCGCCGCGACAATTGCTGCAAGAGGGGAGCAAGCAGGGGCACCGCATCA
TGGGAGTAGATGCAACGAAAGTCGGAAGAATTGGTGACGAAATAGACGGC
GCCACTCGTAGCGAGAACAGCAACGACAAATTACCTCCGTCAAGCTCTCC
CTCTCAAGCTGCATGGCGTGAGCAACTGCGCAAGACCCTACGCGGCAAGC
TTATGTTGGTAACCAATGCCTGGACGGCCACTTTGATACTCACAATCCTC
CTTGCCGTGGTTTTCCGCGCATTACAGCCGACAGAAGAGCCTGGGCTGGG
CGTCACTCACTATGCTTGGCGTGGAGATCCTTCGGATCCGAATCGGCTGA
GCTTGGAAGAACTGGATTTGGATGTTCGCGGGATAGGTCGTTTCAAGATG
GAATTTGGTCCCAGCAAAGTGCAGCTTTACCCCATGGAGGCTGATGAAGA
GGTGAGGGTGGGGCATCGGGATGAGGCTGCTCTTGCTGATTTTTTGCTCG
CAGAGATATCTATGCCGAGCTGGAACGTGACCTTAGGGCATGATTTTACA
ATCGTTTCTGCTGTAAAAGCCAGTACATTTTTCTCTGCAAGGCGTTCGCC
GTTGACGAGCAAAAGAGAGCAGGTAATCTTAAGTGGAAACTTTCATGGCT
ACGTAACTTTGTTCGCGTCGTTGCCCTCACGCATCTTTTTGAAGTGCTAC
CTTCAAACCGATTTGGCCAGTGTGGAGGGTTCTCGATGTGAATCCCAATA
TTTGCCGGACATGAGACGTGGCGGGAGGTAGAGAGAGAAAATgatgtgaa
gaggaagagatagGTTTGGAAAAAGCATGTACAAAGTAATTACGATGGAG
ATTTTGGTGCTCTTGCCAGGAAGAATATATGCT back to topCoding sequence (CDS) from alignment at CM002459.1:488903..490635+ >rna2478 ID=rna2478|Name=rna2478|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at CM002459.1:488903..490635+ (Nannochloropsis gaditana) ATGGTTCCCGTTTTACCTCTCACTGCAACGGGACAGCCTACTACATCGCT TTTATCCTCTCTAGGAAGACGTTTGTCTGTCGCCTCGCGCGCCTCGTTGC TACATGGCCGCCgcgcggggaggagcacatcaagggagggaaccaCGCCG CGACAATTGCTGCAAGAGGGGAGCAAGCAGGGGCACCGCATCATGGGAGT AGATGCAACGAAAGTCGGAAGAATTGGTGACGAAATAGACGGCGCCACTC GTAGCGAGAACAGCAACGACAAATTACCTCCGTCAAGCTCTCCCTCTCAA GCTGCATGGCGTGAGCAACTGCGCAAGACCCTACGCGGCAAGCTTATGTT GGTAACCAATGCCTGGACGGCCACTTTGATACTCACAATCCTCCTTGCCG TGGTTTTCCGCGCATTACAGCCGACAGAAGAGCCTGGGCTGGGCGTCACT CACTATGCTTGGCGTGGAGATCCTTCGGATCCGAATCGGCTGAGCTTGGA AGAACTGGATTTGGATGTTCGCGGGATAGGTCGTTTCAAGATGGAATTTG GTCCCAGCAAAGTGCAGCTTTACCCCATGGAGGCTGATGAAGAGGTGAGG GTGGGGCATCGGGATGAGGCTGCTCTTGCTGATTTTTTGCTCGCAGAGAT ATCTATGCCGAGCTGGAACGTGACCTTAGGGCATGATTTTACAATCGTTT CTGCTGTAAAAGCCAGTACATTTTTCTCTGCAAGGCGTTCGCCGTTGACG AGCAAAAGAGAGCAGGTAATCTTAAGTGGAAACTTTCATGGCTACGTAAC TTTGTTCGCGTCGTTGCCCTCACGCATCTTTTTGAAGTGCTACCTTCAAA CCGATTTGGCCAGTGTGGAGGGTTCTCGATGTGAATCCCAATATTTGCCG GACATGAGACGTGGCGGGAGGTAG back to top
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