rna2454, rna2454 (mRNA) Nannochloropsis gaditana

Overview
Namerna2454
Unique Namerna2454
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1518
Alignment locationCM002459.1:418100..418786 -

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Properties
Property NameValue
Productdephospho- kinase
Orig transcript idgnl|cribi|Naga_100004g90.9091.mrna
Orig protein idgnl|cribi|Naga_100004g90.9091
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:418100..418786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g90gene2347Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28160.1cds2446Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2454rna2454-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2454 ID=rna2454|Name=rna2454|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp
ATGTAAACTCCAGGGGGGTTATGCCACACATTTGACCAGCTCGTCAGAGT
CGAGGTTTTAGGTTGTCTCACATTTGGTTCTTCTCATTGCGTGTGTTAGG
GAAATCCGCTAGCTATTTTCGAGCCTCTGACTTTTTGACCGGTCCCATCA
CGGTTTTCCCACCACGCTAGGAGCTTGTGGACGTCGGTGACGGGATGAGA
AGGGTGTCGCCTCTACTTGGATGGGTGCTTGCACAAAGTCGGCAATGGAC
TGGTTCGGCAGCATTTGTGTCGTCACTTCGAGCCTTGGTGTCATACCCGC
GTGTTTGCTTGAGACCTGTCGTCCCTCATGCTGCTGTCAGCTCGACATGT
CTCAGGAGACGAAGCACGACGACGAGCTCAACGGTGATGGCGGCGTTTGA
GGCAGACAAAAGCACAGTTTCATCCGGCACCGGCACCCCACCAACAGTGG
CAACGATCAGTTCCATATCTCCCTTCATAAATAGGCACGATGTTACCGTG
GAGGTACACTCCGGTCGAGGTCCTTCTCTGCAGCGATTGCGCGTTCACGT
CCTGCCCCTGGAATCGGACAAGTTGGAGGTACTCTTATCACAAGTTTACG
ACCGTGTGGCTCAAAGGGGTGGAATTGTGGGTATGGACGCAGAATGGCAG
CCTGAGGTCCTCCGCTTCGAGCGCAACCCCGTTGCTTTGCTACAGCTGGC
TTGGGAGGAGGACATCTTTCTGGTCCGACTGCAACACATGCGGGGAAAGG
TGCCGGCGTCGCTCCATCGACTTTTGGCCGACGAGCGTATCATTAAGGTT
GGGTGTAATATCGGTGGGGATGCCAAGCGGCTGTTAAAGGACTACGCACT
GGACACGAGAGGGCACGTGGACCTGAGAGAGGTCACCCAGGGCCTGGGGC
TCGTCCAGTGCAAGCGTCGCAGCATGGCGTGGCTGGCCAAGGAATTTTTG
AGGATGGACATGGACAAATCGCAGCAGTGCTCCGATTGGGGAAACCTGGA
GCTGTCGGCGGAGCAGATTAAGTACTCGAGCATCGACGCCTGGGTGGCGC
CGGCCATCGTCGGGCATCTCTTCCGTCGCTACAAGTCCCAGGTCGGCCAG
CCCCCTTGCCCCTCCTCCTTCTGCAAGCGGCTGGTGCCTCAGTATTGGAC
GCGGCGGGTTGGCGACGGGCATCATGCAAAGATAAAGAGATCACCTCCCG
ATGGGAGGTGGGAAGTGCAGCAACAGCAGGAGCGGGAGCAGCAGAAGCAA
CGAAGTAGTAGGGATGGGATGACATATTAATTGAGGAGCTGTCGACTTAC
GGACAGTCGCCGGTGCATGCATGTGGTGACAGATATAATGACGCCCGTAA
TGTGCCCCTCTACGCGGAGATTCGCTTAAATGTTTCGCTCCGTCGCATGC
TTGTGTAGGATCGTGTGATTTAGAGATATGTCTAAAAGTAACAAAGTACC
TTCGAAACGCGCCAAACTGTATAATTTGCCTTCCTCAGATTGTCAGTGGT
AAGTCCAAATTATGCACA
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protein sequence of rna2454

>rna2454-protein ID=rna2454-protein|Name=rna2454|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MPSPPIRTQVDAGMKSVLVHGLTGGIASGKTHACSVLRGLGATVLNADLL
AHACYAPHTPANQQLRKAFGPSIFTTDGRVDRKKLGKLVFQRDHRSLQQL
NKIMFPATEARAKEEIARLTTEGHAWVVVEAAVLVEAGWDLWMDEVWTML
IDPKLAQARLMDRDGMTAEEAQRRIAALASNEVRNKAATLLIDSSGSKEQ
TAAKLRVAAKDLKRRVKDVHNLDLPLTI
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mRNA from alignment at CM002459.1:418100..418786-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2454 ID=rna2454|Name=rna2454|organism=Nannochloropsis gaditana|type=mRNA|length=687bp|location=Sequence derived from alignment at CM002459.1:418100..418786- (Nannochloropsis gaditana)
ATGCCCTCTCCTCCCATTCGGACACAGGTTGATGCCGGAATGAAAAGTGT
ACTGGTCCATGGGCTTACTGGCGGCATCGCTTCAGGGAAGACCCACGCCT
GCAGTGTCTTGAGAGGCCTTGGCGCAACGGTCCTAAATGCCGACCTATTG
GCTCACGCGTGCTATGCCCCTCACACGCCCGCCAACCAGCAACTCCGTAA
GGCCTTCGGACCCAGCATTTTTACCACCGATGGCCGCGTGGACAGGAAGA
AACTCGGCAAGCTCGTGTTCCAGCGCGACCACAGGTCGCTCCAACAATTA
AACAAGATCATGTTTCCTGCCACAGAGGCGCGGGCGAAGGAGGAGATTGC
CCGCCTGACGACGGAGGGCCACGCGTGGGTGGTGGTGGAGGCGGCCGTCT
TGGTCGAGGCAGGGTGGGACTTGTGGATGGATGAGGTCTGGACGATGCTG
ATCGACCCTAAGTTGGCGCAAGCACGATTAATGGACCGAGACGGGATGAC
CGCAGAGGAAGCGCAGAGGAGAATAGCGGCTCTTGCGAGCAATGAGGTGA
GAAACAAGGCGGCGACGCTTCTGATCGACTCGAGCGGTAGCAAAGAGCAG
ACGGCAGCAAAGTTAAGGGTGGCAGCCAAAGACCTCAAACGTCGTGTGAA
AGATGTGCATAATTTGGACTTACCACTGACAATCTGA
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Coding sequence (CDS) from alignment at CM002459.1:418100..418786-

>rna2454 ID=rna2454|Name=rna2454|organism=Nannochloropsis gaditana|type=CDS|length=687bp|location=Sequence derived from alignment at CM002459.1:418100..418786- (Nannochloropsis gaditana)
ATGCCCTCTCCTCCCATTCGGACACAGGTTGATGCCGGAATGAAAAGTGT
ACTGGTCCATGGGCTTACTGGCGGCATCGCTTCAGGGAAGACCCACGCCT
GCAGTGTCTTGAGAGGCCTTGGCGCAACGGTCCTAAATGCCGACCTATTG
GCTCACGCGTGCTATGCCCCTCACACGCCCGCCAACCAGCAACTCCGTAA
GGCCTTCGGACCCAGCATTTTTACCACCGATGGCCGCGTGGACAGGAAGA
AACTCGGCAAGCTCGTGTTCCAGCGCGACCACAGGTCGCTCCAACAATTA
AACAAGATCATGTTTCCTGCCACAGAGGCGCGGGCGAAGGAGGAGATTGC
CCGCCTGACGACGGAGGGCCACGCGTGGGTGGTGGTGGAGGCGGCCGTCT
TGGTCGAGGCAGGGTGGGACTTGTGGATGGATGAGGTCTGGACGATGCTG
ATCGACCCTAAGTTGGCGCAAGCACGATTAATGGACCGAGACGGGATGAC
CGCAGAGGAAGCGCAGAGGAGAATAGCGGCTCTTGCGAGCAATGAGGTGA
GAAACAAGGCGGCGACGCTTCTGATCGACTCGAGCGGTAGCAAAGAGCAG
ACGGCAGCAAAGTTAAGGGTGGCAGCCAAAGACCTCAAACGTCGTGTGAA
AGATGTGCATAATTTGGACTTACCACTGACAATCTGA
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Synonyms
Publications