EWM28187.1, cds2436 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|585110532|gb|EWM28187.1| (glutaredoxin 2 [Nannochloropsis gaditana]) HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0 Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query: 1 MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL
Sbjct: 1 MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|873239655|emb|CEL94178.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 229.565 bits (584), Expect = 1.944e-70 Identity = 114/231 (49.35%), Postives = 161/231 (69.70%), Query Frame = 0
Query: 53 PNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQ-GERVVMPESMDIVKLIDEDPRWGP--PVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKS-LVADLSARLRELDAMLFS--DECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
P LY+YDHCPFCVRAR+IFGLK I H L+++ NDD +TPT L+GKKM PILE+ + GE ++MPES+DIVK IDE G P+L+ S R D+K + DSIA+ SRR +RPRFA S+ LPEF +AR ++ HP ++P Y EN + + +A LS L++LD M+ + + ++EGG+SYDD+D+F ++R L++V GL PP +KAY+E +KT++ LY +M
Sbjct: 108 PRLYVYDHCPFCVRARMIFGLKNIKHDLVYMANDDIETPTHLIGKKMAPILEVRGRRPGEGLIMPESLDIVKYIDESEEIGAGLPLLKPFSGRSDLKEWLDSIAEPSRRLSRPRFAWSANLPEFAFDSARRTYIARHPLENPS-SYEENYERSAEWIAALSEGLKKLDGMIANPQEGYISEGGISYDDIDMFPRLRNLSIVKGLEFPPNVKAYIEVLSKKTDVALYTKMAF 337
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|298709630|emb|CBJ31439.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 217.624 bits (553), Expect = 5.672e-67 Identity = 116/239 (48.54%), Postives = 159/239 (66.53%), Query Frame = 0
Query: 41 GLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGE-RVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQ-NKSLVADLSARLRELDAMLFSDECV-TEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMG 276
G K + RP L+IYDHCP+CVR R++FGLK I H L +L NDD +TPTA+VGKKMVPILE+ E +M ESMDIVK +D DP++GPPVL DR+D+ + S A L RR RPR A++ L EF T +AR AFVRNHP P Y NL+ + L+ +L L +L+ M+ S V +G +SY+DV+ F ++RGLT+V GL +PP+L+AY++A E+ ++PLY ++
Sbjct: 6 GSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTP-LAEFQTRSAREAFVRNHPLPE-PSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQGLGIPPKLRAYLDAVSERVDVPLYDKIA 242
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|676393869|ref|XP_009040212.1| (hypothetical protein AURANDRAFT_31368 [Aureococcus anophagefferens] >gi|323449194|gb|EGB05084.1| hypothetical protein AURANDRAFT_31368 [Aureococcus anophagefferens]) HSP 1 Score: 196.438 bits (498), Expect = 1.477e-58 Identity = 100/246 (40.65%), Postives = 158/246 (64.23%), Query Frame = 0
Query: 36 AAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNH---PFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
AA+ GL + L P LY+YDHCPFCVRAR+ GLK + H + F+ NDD PT+LVGKK+ PI + G ES+DIV+ +D D ++GPP + R SDR D+KA+ S+ R RPR+ + + LPEF T +++ AFV+NH P + + ++ + +L+A+++ +L++L+ ++ ++C TEGG+S DD+DL+ ++R LT+V GLV PP+++AY++ EK + PLY + +
Sbjct: 13 AASVDGLAATTISLTPTPVLYVYDHCPFCVRARLALGLKGVRHDVRFMANDDVPLPTSLVGKKIAPIWD----DGSSAPYAESLDIVRNVDADDKYGPPGMFREMSDRTDLKAWQKSVQQPLRLLQRPRY-VKTYLPEFVTRSSKDAFVKNHQLPPSREAGLEERQS-NDAALIAEVNEKLKDLEPLICCEDCCTEGGLSLDDIDLWSRLRSLTIVKGLVFPPKVRAYMDNLAEKGDCPLYDAIAI 252
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|1210521001|dbj|GAX20106.1| (glutaredoxin 2 [Fistulifera solaris]) HSP 1 Score: 196.823 bits (499), Expect = 3.398e-58 Identity = 109/289 (37.72%), Postives = 160/289 (55.36%), Query Frame = 0
Query: 10 MLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQL---DKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD---------------YTENLQNKSL--VADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
+L+F S + F P +R P A + + + PN+Y+YDHCPFCVR R G+K I H + F+ NDD TPTALVGKK+ PI E A + M ES+DI+ L+D D R+GP V+ +DR DIKA+ S+ L R RPR+ + +LPEF R AF+ NHP PP++ Y E + + +L+ +L ELD ++FS + GG+SYDD+DLF ++R +T++ ++ P +L+AY++ E +IPLY +M L
Sbjct: 8 LLLFASSVQAFQVPLGQRSLMRAPMTATVAETVPFSKPERVIPEVLPNVYVYDHCPFCVRVRFALGVKNIKHNIRFMANDDVPTPTALVGKKIAPIFEWPSAD---ICMAESLDIISLVDSDERFGPTGVILPATDRADIKAWQKSVQGLLRILQRPRYVATGLLPEFQQLDGRQAFIMNHPL--PPYEKAEWKEMGAEERLSIYAETMAKDPADEIEELNRKLVELDDIIFSQYHCSPGGLSYDDIDLFARLRSITIIKDVIWPSKLRAYMDVMSELGDIPLYDEMAL 291
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|1210528014|dbj|GAX13129.1| (glutaredoxin 2 [Fistulifera solaris]) HSP 1 Score: 196.438 bits (498), Expect = 4.310e-58 Identity = 109/289 (37.72%), Postives = 160/289 (55.36%), Query Frame = 0
Query: 10 MLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQL---DKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD---------------YTENLQNKSL--VADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
+L+F S + F P +R P A + + + PN+Y+YDHCPFCVR R G+K I H + F+ NDD TPTALVGKK+ PI E A + M ES+DI+ L+D D R+GP V+ +DR DIKA+ S+ L R RPR+ + +LPEF R AF+ NHP PP++ Y E + + +L+ +L ELD ++FS + GG+SYDD+DLF ++R +T++ ++ P +L+AY++ E +IPLY +M L
Sbjct: 8 LLLFASSVRAFQVPLGQRSLMRAPMTATVAETVPFSKPERVIPEVLPNVYVYDHCPFCVRVRFALGVKNIKHNIRFMANDDVPTPTALVGKKIAPIFEWPSAD---ICMAESLDIISLVDSDERFGPTGVILPATDRADIKAWQKSVQGLLRILQRPRYVATGLLPEFQQLDGRQAFIMNHPL--PPYEKAEWKEMGAEERLSIYAETMAKDPADEIEELNRKLVELDDIIFSQYHCSPGGLSYDDIDLFARLRSITIIKDVIWPSKLRAYMDGMSELGDIPLYDEMAL 291
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|551612145|ref|XP_005787117.1| (hypothetical protein EMIHUDRAFT_447067, partial [Emiliania huxleyi CCMP1516] >gi|485640459|gb|EOD34688.1| hypothetical protein EMIHUDRAFT_447067, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 191.43 bits (485), Expect = 1.818e-56 Identity = 114/293 (38.91%), Postives = 165/293 (56.31%), Query Frame = 0
Query: 5 LQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD------------------YTENL-QNKSLVADLSARLRELDAMLFSDECVTEG-GVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
+ + ++ +FCS + + PVR SRAAA+ L P LY+YDHCPFCVR R+ G+ +PH+L+F+ NDD +TPTA+VGKK+ PI +D +G M ES+DI+ D + P S R D+KA+ S+ L R+ RPR+ + LPEF A R AFV NH + PPF+ Y+E Q L+A+ +A++ EL+ M+ + E TEG G SYDDVDL+ ++R LTVV GL + P+ +AY++ F E ++PLY M +
Sbjct: 1 MALAVVAVFCSGFQRLPQRLPSSAPVRPASRAAAYMAL----------PELYVYDHCPFCVRVRVAAGVLGVPHKLVFMGNDDVETPTAMVGKKIAPIW--VDEEGP---MAESLDIIAKFDAGGQIAP-----ASGRTDLKAWQKSVQTLMRKLQRPRYVMVP-LPEFMQKAGRDAFVANH--QMPPFEKSEWKGNPDMPLEQKYQKYSEAFAQTPELLAEANAKVAELEGMIHAPEACTEGLGFSYDDVDLWARLRSLTVVKGLQIGPKTRAYLDHFAEAGDVPLYDVMAV 270
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|224015302|ref|XP_002297308.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968021|gb|EED86379.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 189.889 bits (481), Expect = 2.521e-55 Identity = 97/249 (38.96%), Postives = 148/249 (59.44%), Query Frame = 0
Query: 53 PNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNH---PFKSPPFDYTENLQNKS--------------------LVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
P +Y+YDHCPFCVR R+ G+K + H + FL NDD TPT LVGKK+ PI ++ + ++++M ES+DI+ ID D R+GP + S R+DIKA+ S+ L R RPR+ + +LPEF R AF++NH P++ P + + +N L+ DL+ARL ELD ML+S+ +EGG S DD+DL+ ++R +T++ G+ P +L+AY++ ++PLY +M L
Sbjct: 69 PTVYVYDHCPFCVRVRLAMGMKNVKHLIHFLANDDVATPTGLVGKKIAPIFQLPE---DKLIMMESLDIIAKIDSDERFGPTNQILPASGRKDIKAWQKSVQTLLRTLQRPRYVATGLLPEFQQLDGRHAFIKNHQLPPYEKPEWKGDGSSENPGMEMDQKLKLYAEAMAADPTPLIEDLNARLVELDDMLYSEHFCSEGGFSLDDIDLWARLRSVTIIQGVQWPGKLRAYMDNLSALGDVPLYDEMAL 314
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|551619434|ref|XP_005790301.1| (hypothetical protein EMIHUDRAFT_446936 [Emiliania huxleyi CCMP1516] >gi|485643911|gb|EOD37872.1| hypothetical protein EMIHUDRAFT_446936 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 181.415 bits (459), Expect = 5.247e-53 Identity = 102/245 (41.63%), Postives = 145/245 (59.18%), Query Frame = 0
Query: 53 PNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD------------------YTENL-QNKSLVADLSARLRELDAMLFSDECVTEG-GVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
P LY+YDHCPFCVR R+ G+ +PH+L+F+ NDD +TPTA+VGKK+ PI +D +G M ES+DI+ D + P S R D+KA+ S+ L R+ RPR+ + LPEF A R AFV NH + PPF+ Y+E Q L+A+ +A++ EL+ M+ + E TEG G SYDDVDL+ ++R LTVV GL + P+ +AY++ F E ++PLY M +
Sbjct: 4 PELYVYDHCPFCVRVRVAAGVLGVPHKLVFMGNDDVETPTAMVGKKIAPIW--VDEEGP---MAESLDIIAKFDAGGQIAP-----ASGRTDLKAWQKSVQTLMRKLQRPRYVMVP-LPEFMQKAGRDAFVANH--QMPPFEKSEWKGNPDMPLEQKYQKYSEAFAQTPELLAEANAKVAELEGMIHAPEACTEGLGFSYDDVDLWARLRSLTVVKGLQIGPKTRAYLDHFAEAGDVPLYDVMAV 235
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|219123711|ref|XP_002182163.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406124|gb|EEC46064.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 182.956 bits (463), Expect = 1.105e-52 Identity = 101/249 (40.56%), Postives = 144/249 (57.83%), Query Frame = 0
Query: 50 DKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGP-PVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTE-------------NLQNKSLVAD-------LSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
D P +Y+YDHCPFCVR R G+K + H + FL NDD TPTALVGKK+ P+ +A +VM ES+DI +L+D D R+GP +R ++R DI+ + S+ L R RPR+ + +LPEF AR AFV NH PP++ E L + AD L+ +L ELD +L S+ + GG+SYDDVDLF ++R +T+V G+ P +L+AY++ E ++PLY M +
Sbjct: 62 DVLPTVYVYDHCPFCVRVRFALGVKNVKHYVHFLANDDVPTPTALVGKKIAPVWVWPEAD---IVMAESLDICRLVDADERFGPVQAIRPATERTDIRDWQKSVQSLLRTLQRPRYVATGLLPEFQQRDARDAFVANHQL--PPYEKNEWKGSDGPTLAEKWQLYRDARDADPTQHLQALNEKLVELDELLDSEYHCSPGGLSYDDVDLFARLRSVTIVKGVQWPTKLRAYMDYMAELGDVPLYDAMAM 305 The following BLAST results are available for this feature:
BLAST of EWM28187.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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