EWM28200.1, cds2409 (CDS) Nannochloropsis gaditana

Overview
NameEWM28200.1
Unique Namecds2409
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:335356..335876 +
Alignment locationCM002459.1:336102..338994 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28200.1
Productarginine serine-rich splicing factor
Orig transcript idgnl|cribi|Naga_100004g51.9131.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:335356..335876 +
CM002459.1supercontigCM002459.1:336102..338994 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR012677Nucleotide-bd_a/b_plait
IPR001841Znf_RING
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM28200.1 vs. NCBI_GenBank
Match: gi|585110545|gb|EWM28200.1| (arginine serine-rich splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 2283.06 bits (5915), Expect = 0.000e+0
Identity = 1137/1137 (100.00%), Postives = 1137/1137 (100.00%), Query Frame = 0 
Query:    1 MLATPATPNTEGAVDAPEGTSATTAHPASLPIPPLPLSSPAAALSQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEGYGSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDRQGRQGMAGGGNEREKERERERGWERERGRERDREWDREREGFRGRERGRSRDRERSRDRRMRDGRGEPPFPSRFDGPGERERDRQRQRDPPPFPDGPPLPPNRLLVLPAARGCPPFEVYAEDLEKLRELVFLMQSHLPPHQRQTLEDALQNRELYEGISTLVGRNQRGMDAVLRDLRLELGLPPDGPRHAPPSPPAPHHQPPPRHGDGPIPSHPRDRGPPPPPFRDPPLERHRDPRDMHERGRPRYPSPPPSDYRRFPPDYPDPHHPHAPHYYPRSPPRSEYRGHSPGRREGRSLPPPPSYLDDRHRGPPMPLRPSSPPPGYGGRERDRYRHRGVDRDPGLERERDPFGSRGMPLMDRRSPSHSHSGQRRPRSRSPPRGMMPPQLPPYPPENGKRPHDNGRSSLGRSRSPSSQRRRVQEPPLSGPSSQPHLSRDVYPPRGPPPSMVPPGPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSSPPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTALSR 1137
            MLATPATPNTEGAVDAPEGTSATTAHPASLPIPPLPLSSPAAALSQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEGYGSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDRQGRQGMAGGGNEREKERERERGWERERGRERDREWDREREGFRGRERGRSRDRERSRDRRMRDGRGEPPFPSRFDGPGERERDRQRQRDPPPFPDGPPLPPNRLLVLPAARGCPPFEVYAEDLEKLRELVFLMQSHLPPHQRQTLEDALQNRELYEGISTLVGRNQRGMDAVLRDLRLELGLPPDGPRHAPPSPPAPHHQPPPRHGDGPIPSHPRDRGPPPPPFRDPPLERHRDPRDMHERGRPRYPSPPPSDYRRFPPDYPDPHHPHAPHYYPRSPPRSEYRGHSPGRREGRSLPPPPSYLDDRHRGPPMPLRPSSPPPGYGGRERDRYRHRGVDRDPGLERERDPFGSRGMPLMDRRSPSHSHSGQRRPRSRSPPRGMMPPQLPPYPPENGKRPHDNGRSSLGRSRSPSSQRRRVQEPPLSGPSSQPHLSRDVYPPRGPPPSMVPPGPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSSPPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTALSR
Sbjct:    1 MLATPATPNTEGAVDAPEGTSATTAHPASLPIPPLPLSSPAAALSQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEGYGSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDRQGRQGMAGGGNEREKERERERGWERERGRERDREWDREREGFRGRERGRSRDRERSRDRRMRDGRGEPPFPSRFDGPGERERDRQRQRDPPPFPDGPPLPPNRLLVLPAARGCPPFEVYAEDLEKLRELVFLMQSHLPPHQRQTLEDALQNRELYEGISTLVGRNQRGMDAVLRDLRLELGLPPDGPRHAPPSPPAPHHQPPPRHGDGPIPSHPRDRGPPPPPFRDPPLERHRDPRDMHERGRPRYPSPPPSDYRRFPPDYPDPHHPHAPHYYPRSPPRSEYRGHSPGRREGRSLPPPPSYLDDRHRGPPMPLRPSSPPPGYGGRERDRYRHRGVDRDPGLERERDPFGSRGMPLMDRRSPSHSHSGQRRPRSRSPPRGMMPPQLPPYPPENGKRPHDNGRSSLGRSRSPSSQRRRVQEPPLSGPSSQPHLSRDVYPPRGPPPSMVPPGPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSSPPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTALSR 1137
[Close]
BLAST of EWM28200.1 vs. NCBI_GenBank
Match: gi|553179788|ref|XP_005852762.1| (arginine serine-rich splicing factor [Nannochloropsis gaditana CCMP526] >gi|422295771|gb|EKU23070.1| arginine serine-rich splicing factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 2281.52 bits (5911), Expect = 0.000e+0
Identity = 1135/1136 (99.91%), Postives = 1136/1136 (100.00%), Query Frame = 0 
Query:    1 MLATPATPNTEGAVDAPEGTSATTAHPASLPIPPLPLSSPAAALSQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEGYGSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDRQGRQGMAGGGNEREKERERERGWERERGRERDREWDREREGFRGRERGRSRDRERSRDRRMRDGRGEPPFPSRFDGPGERERDRQRQRDPPPFPDGPPLPPNRLLVLPAARGCPPFEVYAEDLEKLRELVFLMQSHLPPHQRQTLEDALQNRELYEGISTLVGRNQRGMDAVLRDLRLELGLPPDGPRHAPPSPPAPHHQPPPRHGDGPIPSHPRDRGPPPPPFRDPPLERHRDPRDMHERGRPRYPSPPPSDYRRFPPDYPDPHHPHAPHYYPRSPPRSEYRGHSPGRREGRSLPPPPSYLDDRHRGPPMPLRPSSPPPGYGGRERDRYRHRGVDRDPGLERERDPFGSRGMPLMDRRSPSHSHSGQRRPRSRSPPRGMMPPQLPPYPPENGKRPHDNGRSSLGRSRSPSSQRRRVQEPPLSGPSSQPHLSRDVYPPRGPPPSMVPPGPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSSPPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTALS 1136
            MLATPATPNTEGAVDAPEGTSATTAHPASLPIPPLPLSSPAAALSQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEG+GSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDRQGRQGMAGGGNEREKERERERGWERERGRERDREWDREREGFRGRERGRSRDRERSRDRRMRDGRGEPPFPSRFDGPGERERDRQRQRDPPPFPDGPPLPPNRLLVLPAARGCPPFEVYAEDLEKLRELVFLMQSHLPPHQRQTLEDALQNRELYEGISTLVGRNQRGMDAVLRDLRLELGLPPDGPRHAPPSPPAPHHQPPPRHGDGPIPSHPRDRGPPPPPFRDPPLERHRDPRDMHERGRPRYPSPPPSDYRRFPPDYPDPHHPHAPHYYPRSPPRSEYRGHSPGRREGRSLPPPPSYLDDRHRGPPMPLRPSSPPPGYGGRERDRYRHRGVDRDPGLERERDPFGSRGMPLMDRRSPSHSHSGQRRPRSRSPPRGMMPPQLPPYPPENGKRPHDNGRSSLGRSRSPSSQRRRVQEPPLSGPSSQPHLSRDVYPPRGPPPSMVPPGPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSSPPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTALS
Sbjct:    1 MLATPATPNTEGAVDAPEGTSATTAHPASLPIPPLPLSSPAAALSQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTGSRNGEEAGSSYGTEDGREDPMKKLRFKKNILLNNLVSHFRQQQEQRGPGLSAGLSPPAGPHAGHTKDGQEVEGKEEGHGSPEGEKGEAAADPSVEQEGGVTEDGEVMEDAAVSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGERDRQGRQGMAGGGNEREKERERERGWERERGRERDREWDREREGFRGRERGRSRDRERSRDRRMRDGRGEPPFPSRFDGPGERERDRQRQRDPPPFPDGPPLPPNRLLVLPAARGCPPFEVYAEDLEKLRELVFLMQSHLPPHQRQTLEDALQNRELYEGISTLVGRNQRGMDAVLRDLRLELGLPPDGPRHAPPSPPAPHHQPPPRHGDGPIPSHPRDRGPPPPPFRDPPLERHRDPRDMHERGRPRYPSPPPSDYRRFPPDYPDPHHPHAPHYYPRSPPRSEYRGHSPGRREGRSLPPPPSYLDDRHRGPPMPLRPSSPPPGYGGRERDRYRHRGVDRDPGLERERDPFGSRGMPLMDRRSPSHSHSGQRRPRSRSPPRGMMPPQLPPYPPENGKRPHDNGRSSLGRSRSPSSQRRRVQEPPLSGPSSQPHLSRDVYPPRGPPPSMVPPGPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSSPPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTALS 1136
The following BLAST results are available for this feature:
BLAST of EWM28200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110545|gb|EWM28200.1|0.000e+0100.00arginine serine-rich splicing factor [Nannochlorop... [more]
gi|553179788|ref|XP_005852762.1|0.000e+099.91arginine serine-rich splicing factor [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2417rna2417Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications