rna2410, rna2410 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2410
Unique Name	rna2410
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3266
Alignment location	CM002459.1:319940..322192 -

Link to JBrowse

Properties


Property Name	Value
Product	tripeptidyl-peptidase 2
Orig transcript id	gnl\|cribi\|Naga_100004g44.9230.mrna
Orig protein id	gnl\|cribi\|Naga_100004g44.9230
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:319940..322192 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g44	gene2304	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28299.1	cds2402	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2410	rna2410-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:319940..322192-
coding sequence from alignment at CM002459.1:319940..322192-

mRNA sequence

>rna2410 ID=rna2410|Name=rna2410|organism=Nannochloropsis gaditana|type=mRNA|length=3266bp
TTTGTACAGAGGGCCCTTCCTGCCGGCCCGTGGCCGGAGCGGAGGACGGG
CGCATGGAGACATCAGGAGGGGCTGGGGTCGGCGCAGTCTCCCCACTGCC
GGGCCCGAACACTACGACGAGCACGATCGATGAAGCCGCGGACCATGAAG
CGTCTCACCCTCCAGTGACTTTTTTAGCGCCTGCGCATTCCACGAACCCA
TTGACCTGCGGCTCTTCGACCCGGAATGGCGCGGAGCACGGGGCAGGAAC
ACACGGCTCAGCGGACAGCACCAGCCCCGACCGCTATCAAGTCCAATTTG
TCGAGATCGGGACGCGGAAATTGGGAATGGTTGTGGAAAATTGCTCGGAC
GTGAACGTTGTTGTAGATCTGCATCATGATAACGATGGTCGGAGCCAGGC
GAGAGAGCTCGGGGTCCAGTGCAACGATGTGATTGTCAGCATCGATGACC
AAGATGTGCATGGATGGCGGCTCGAGGATATAGTGGCCTGCATTAAAAGC
AAAACGAAGACTTTCCGCGTGGGGTTCTCACGCGCCAACATAGCAGGGGG
AAAGAAGGCGTGTCCGGAGGGAGCTGCCAGCCAAGAAGGAGCGGGGGGGG
AGCAGACGCCCGTAAACGCTCAAATGGGCACTGAAAGAGACAGCGAGAGG
GGAGCAGAGCCACGCATAGAGGAGCACCGGATGAGTGCGGCCCCCCAGGA
TCCACAAGCGGGGACGTCGGCTCCTCCCCCACTGCCTGTGTCGGTGGCTC
CGCCGTCGACCGCGGATGGGGACAGCCGGCCTCGCCAAAGGGCGCCCTCT
GTGACAGCTGGAGGGGTTCGGCGGGAAACGCAGCCGCGGCAGCAGGAGGA
AGGTCTGGTCGCCGCGAGCGGGCAAGAGCAGCTAGCCGAGGCAGGAGGAA
GAGGGGGGCAAGGGGGCGGGTCGGACGACGAGGTGGAGGTGGTGGGGGTG
CTTCAGGCGCCGCGAAGTCATCGGCTCCCGCCAGTGCAGTCGGCAATGGG
CGATTCCGCTCAAGCAAGCAAGGCCAGTCAGCAAGACAAAGGGCATCACT
CGCTTCCCCACCGGCTGCCTCCCATCTCGGCGCGGCCACAGCGGCATCCA
GAGGAGCTGGGACAGGTGGCAGTAGGGTATCAACACATGCACGAATATCA
ACAGCGCCTGCAGCAGCATCAACAGCAAAAGCAACAGCAGCTGCAGGAAA
GTCAGCGACTACCGACGCACAGAAAACCGTTGGCGTCGCCGCTGGGACAT
GGGCCGGTGTCGAACGGCGGAGGCCCCCTCGGGCGGGATCACGGCACGCG
GTCGGAGAAGCTACGATCTGAAAGGGCGGGAAGCGAAGGACAAATAAGTA
CCTACCTTCGAAAGATTGTCAACGCCCCTGCAGATTCCACGGGTCCTTGG
TTGGAAGAAAGGGGAAAGGATATGCTGACACAGCTTGTCTTCAAGGGTGA
GGAGGATCTTGGAACGGACTGTGAGGTTCTAGGGCTGGAATCAAGGACAG
CTGGACACGAACCAATACAATCCCAGGACAGAAATGGTAACAGAATGGGA
GCGCAGGCGGATGAAAATGGGAAAGAACCAAGTACAGTCCAACAAGCCCC
TGAGAATTCGACCGTGGAGGTGATGTGCAAAAAGCGAAAGCGGGGCAGCG
AGATGGAGAAAGAGAATGACAGCAGCCTCTCGCGTGGCAGCGGTGGTAGG
ACCAACGATGTATCTTTGAAGACCTCCAACAATCATGCGATAAAGGATAT
CAAGGCGTGGTATACACGGTTACGCGACATGCGGCTGGATTGTGTCCAGC
TACAGCTGGACGGGAACGAATACTTCAGAGGCGTTCTAGCCCACGTCCAT
CGCTTGGTCGAAGAGAACGGGGCAGTGAGGGAGTTGCTCAAAAAGAGGAT
CGTGACCTACCGCATGCAATGTCATGAATTTCGCATGGCAGATACAAGAG
TGGATAAAGCTCCCCTCGCGAGGAGATGGGATGAATTGAATGATCAATAC
CGAACGCACGGAGATGTGCAGAAATCAATTCATAAGCTCGTCACCCAATT
GGAGCAAGCGGTCGGCGAGCTGTATCCTGCCGTGAATGGACAAATTGATG
AGCAGCTCTACTTGCAGCTCCGTAAATTAGAAACAATCATGGGCGAGATC
GGCGACCTGAACTCGGTGCTCAAAGAAGTGTCCCAAGCAGGACGGAATGG
ACACGCTGCCGGTGCCAGAGGCGAGACTGGGCGGGACAGGAGGCTCGATG
AAGGAGAGGGGTTTGGATGGGAGGCATGCGCGGGGGCCGGCGCTCGTGTT
GCTCACGGAGCTGCTTTGTGTCAAATCGAGCCCAATAATCTCGATGACGA
AGGGCCGCTGGGTTGCCACGACACCAACAACTCTCGTCTGAGCATCCTGA
CATCCCCCCCCCAATCCGTCCCGTCCTCTATCTCGAGCTCAGCCACGTGC
GCATCAGGGATCACAAGAAGGAATCTATGCGGCCACACACAAATTCGAAC
ATAAGCGTGTCCTCTTGGGTGCGAATCATCAGTTGTCTGTCCTTCCCACA
CCATACGCCTACGACATCCCTTATAACCCGCAGAGTGCCATCGTTCCCTT
TCGCCGGGTTCAAATCAAGCTGAAGGGGCCTCTTGTTACTCAAGTGGGCA
GAGGTGACGGGCTCTGTCGCTGGAAGCCTCCTCCGAAGGCGGTTGGATTA
CCCACAATGGCTGAAATTGAATCGTTGTTGGGCCAGTTCTCGCGTGTTTA
CGAAGCACACTTGCTATGGCTTATCTACGAGACAGGCTGGGAGTTGACGG
TGGCTCGCCGACTGTTTATGGAGAAATTGGAATTGAAGGTAGCATTTCAA
GACAAGGACGAAAGAGGCCACCCCATACCGTTTCTAGACCGCTTTTCACA
GCAGGACGCACTAGAGTTTGGAAAGGTAATGGCTGACGACTGGAAGAACT
TCCACTTAGCATCGCGAATGCTCAAGAAAAGCACTAAAAGCTGTGTCGCG
TTTTACTACTCAACCTGGAAAAAGAGCGAGGCTTATCGAAGATTGAAGAT
GGGGAATGAGCGGGCTCGAGAAGCGAACAGGTGGCGAGAAGGGGATTGAA
ACCACAGCCATTCATGCAAAAAGAAGGGTGAACAGCATACGTATAAACGA
AATAAAGCTTGGAGAGCTTTGCAGAAAAGGGAGAGTGCTGATGACACAAC
TGCTATGCGATGTGGCATGGTGAAGACCTCTCGACGCGTTATAGACACCA
CCAGGAGAAAAACGTC

protein sequence of rna2410

>rna2410-protein ID=rna2410-protein|Name=rna2410|organism=Nannochloropsis gaditana|type=polypeptide|length=750bp
MLMNNGRGFNITVDGSRLPHGLHFCKVLGHDVAHPELGPFFEVPITVVKP
LELAKPPPTPLDLGVYALSSGQVERNFLVPPAGATWMDVTLSDRRAVHAV
APPSAPDQIASAMGKDPGLATNSRTTGNGGQVIIVALQTVQLLPQTPFRD
TEFEKYVALAPGQKETFSILVEAGVTVEIALAQYAISEGSTTVGITVEFR
GLSPRGNSQDIVLHGGHGCIHVPVEAQVHDEEIAPICKLDRWQTKLTPNS
SSIKALDPDRDVLADGKQIYQLLLEYKFTTETGGEEVIPRALLLNGVLYE
SPMESQFFMAFDANKKYLGCGDAWPGKVKCPKGENVLRYSVRHDDLSLLQ
SLKGLVVVIERALKEGKEVSVPDFATREEAMTRKKRGGNGASRMLRQGCA
TSFFLAEPAFDKMPKGVKAGDLLTGSLVLEKAKGKEQPQSRRPRGFRVSY
VVPPPPPEAPKGPSKPTAQDKRTEETKLEEKVRDVKVQHLGGLTDSTAFE
SLFKKLLDDYPAHIPLHQARLRFLDEENSRNERLPDVVSAANSVIDLVDR
QALASHFGVKVDENDPEAMKVRGEMEEKKAALVDALARKARALIDRRGGG
EKKEGGGVGQHVEVSPDAEKQGSDEAGEKERDGEDRNGDLQGVLGHEARK
SGVHGADVAAVVAELMKWDSLDQDKYARLLLDRDAGYGRWGLVLKLLNKL
LGDAGNSSGIDKKELYERRLNVFEHLGWTHLIENERKWRVIDCPTSYSLF

mRNA from alignment at CM002459.1:319940..322192-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2410 ID=rna2410|Name=rna2410|organism=Nannochloropsis gaditana|type=mRNA|length=2253bp|location=Sequence derived from alignment at CM002459.1:319940..322192- (Nannochloropsis gaditana)
ATGCTCATGAACAACGGACGCGGCTTCAATATCACGGTGGACGGGTCGCG
ACTGCCCCACGGGCTGCACTTCTGCAAAGTGCTCGGACACGACGTCGCCC
ACCCGGAGCTCGGTCCTTTCTTCGAGGTGCCGATCACCGTGGTCAAGCCA
CTGGAGCTTGCGAAGCCCCCACCGACCCCCCTGGATCTCGGCGTCTACGC
TCTTTCCTCAGGTCAGGTGGAGCGGAATTTCCTGGTCCCCCCCGCCGGAG
CCACCTGGATGGACGTGACCTTATCCGACCGCCGTGCTGTCCATGCTGTC
GCCCCTCCCTCGGCTCCAGATCAGATCGCATCAGCGATGGGAAAAGATCC
GGGCTTGGCCACGAATAGCCGCACCACTGGCAATGGAGGTCAAGTCATCA
TTGTGGCCCTTCAAACCGTGCAACTGCTCCCGCAAACTCCTTTCCGAGAT
ACGGAATTCGAGAAATACGTGGCATTGGCCCCGGGACAGAAGGAGACATT
CAGCATTCTGGTCGAGGCGGGAGTGACGGTGGAGATAGCATTGGCGCAAT
ACGCGATCTCGGAGGGGAGCACGACCGTGGGCATAACGGTGGAGTTTCGG
GGCCTCTCCCCTCGGGGCAACAGCCAGGACATCGTCCTGCACGGCGGACA
TGGTTGCATACACGTGCCCGTCGAGGCACAGGTCCACGACGAGGAAATCG
CCCCTATTTGCAAACTGGACAGATGGCAGACGAAACTGACTCCCAACTCC
TCCAGCATCAAGGCATTGGACCCTGATCGCGACGTCCTCGCGGATGGCAA
GCAAATATATCAGCTGCTTCTCGAGTACAAATTCACCACGGAGACAGGGG
GCGAGGAAGTGATCCCGCGGGCCCTGCTCTTGAACGGAGTCTTGTACGAG
TCGCCCATGGAGTCCCAATTTTTCATGGCATTCGACGCGAACAAGAAGTA
TCTGGGATGCGGGGACGCATGGCCGGGGAAGGTCAAATGCCCCAAGGGCG
AGAATGTGCTCAGATACAGCGTGCGGCACGATGATCTTTCACTCCTGCAA
AGCCTGAAAGGGCTGGTGGTGGTGATTGAGCGGGCGCTGAAGGAAGGCAA
GGAAGTGAGCGTCCCCGACTTTGCCACGCGGGAGGAGGCCATGACCCGGA
AGAAGCGAGGGGGTAATGGGGCCAGTCGCATGCTGCGCCAGGGGTGTGCG
ACCTCGTTCTTCTTAGCCGAGCCAGCCTTCGACAAGATGCCGAAAGGCGT
CAAAGCCGGGGACCTTTTGACTGGTTCGCTGGTCCTAGAGAAGGCCAAAG
GGAAGGAGCAACCTCAGTCGAGACGGCCCCGCGGTTTCCGTGTATCCTAT
GTTGTTCCTCCCCCTCCACCGGAGGCGCCCAAAGGCCCCAGCAAGCCCAC
GGCTCAAGACAAACGCACGGAGGAAACAAAACTCGAAGAGAAAGTCAGGG
ATGTGAAAGTGCAGCATTTAGGTGGCCTGACAGACAGCACAGCCTTTGAG
AGCTTGTTTAAGAAGCTTTTGGATGATTACCCTGCTCATATTCCCTTGCA
TCAGGCCCGGCTTCGATTTCTGGACGAGGAAAACTCGAGGAATGAGCGCT
TACCTGATGTGGTAAGTGCAGCAAACAGCGTGATAGACTTGGTAGATAGA
CAGGCACTGGCCTCACACTTCGGAGTGAAGGTAGATGAGAACGATCCGGA
GGCAATGAAAGTGCGAGGGGAAATGGAGGAAAAGAAAGCAGCCTTGGTGG
ATGCATTGGCCCGAAAGGCCAGGGCGTTGATTGACAGGAGAGGAGGAGGA
GAAAAGAAAGAGGGTGGGGGTGTCGGACAGCATGTCGAAGTGAGCCCCGA
TGCCGAAAAGCAAGGATCCGATGAGGCTGGAGAAAAGGAAAGAGACGGAG
AGGACCGAAACGGAGATTTGCAAGGCGTGCTTGGCCACGAGGCACGGAAG
AGCGGAGTACATGGGGCCGATGTTGCAGCCGTGGTGGCTGAGCTCATGAA
GTGGGATTCACTGGACCAAGATAAGTACGCACGCCTGTTGTTGGATCGAG
ATGCCGGCTACGGGCGATGGGGCTTGGTTCTCAAGCTTCTGAACAAGCTT
TTGGGTGACGCGGGGAATTCCAGTGGCATCGACAAGAAGGAATTGTACGA
GCGTCGTTTGAACGTCTTCGAGCACCTAGGATGGACGCACTTGATTGAGA
ATGAGCGAAAATGGCGAGTCATCGATTGCCCTACGAGCTACAGCCTCTTC
TGA

Coding sequence (CDS) from alignment at CM002459.1:319940..322192-

>rna2410 ID=rna2410|Name=rna2410|organism=Nannochloropsis gaditana|type=CDS|length=2253bp|location=Sequence derived from alignment at CM002459.1:319940..322192- (Nannochloropsis gaditana)
ATGCTCATGAACAACGGACGCGGCTTCAATATCACGGTGGACGGGTCGCG
ACTGCCCCACGGGCTGCACTTCTGCAAAGTGCTCGGACACGACGTCGCCC
ACCCGGAGCTCGGTCCTTTCTTCGAGGTGCCGATCACCGTGGTCAAGCCA
CTGGAGCTTGCGAAGCCCCCACCGACCCCCCTGGATCTCGGCGTCTACGC
TCTTTCCTCAGGTCAGGTGGAGCGGAATTTCCTGGTCCCCCCCGCCGGAG
CCACCTGGATGGACGTGACCTTATCCGACCGCCGTGCTGTCCATGCTGTC
GCCCCTCCCTCGGCTCCAGATCAGATCGCATCAGCGATGGGAAAAGATCC
GGGCTTGGCCACGAATAGCCGCACCACTGGCAATGGAGGTCAAGTCATCA
TTGTGGCCCTTCAAACCGTGCAACTGCTCCCGCAAACTCCTTTCCGAGAT
ACGGAATTCGAGAAATACGTGGCATTGGCCCCGGGACAGAAGGAGACATT
CAGCATTCTGGTCGAGGCGGGAGTGACGGTGGAGATAGCATTGGCGCAAT
ACGCGATCTCGGAGGGGAGCACGACCGTGGGCATAACGGTGGAGTTTCGG
GGCCTCTCCCCTCGGGGCAACAGCCAGGACATCGTCCTGCACGGCGGACA
TGGTTGCATACACGTGCCCGTCGAGGCACAGGTCCACGACGAGGAAATCG
CCCCTATTTGCAAACTGGACAGATGGCAGACGAAACTGACTCCCAACTCC
TCCAGCATCAAGGCATTGGACCCTGATCGCGACGTCCTCGCGGATGGCAA
GCAAATATATCAGCTGCTTCTCGAGTACAAATTCACCACGGAGACAGGGG
GCGAGGAAGTGATCCCGCGGGCCCTGCTCTTGAACGGAGTCTTGTACGAG
TCGCCCATGGAGTCCCAATTTTTCATGGCATTCGACGCGAACAAGAAGTA
TCTGGGATGCGGGGACGCATGGCCGGGGAAGGTCAAATGCCCCAAGGGCG
AGAATGTGCTCAGATACAGCGTGCGGCACGATGATCTTTCACTCCTGCAA
AGCCTGAAAGGGCTGGTGGTGGTGATTGAGCGGGCGCTGAAGGAAGGCAA
GGAAGTGAGCGTCCCCGACTTTGCCACGCGGGAGGAGGCCATGACCCGGA
AGAAGCGAGGGGGTAATGGGGCCAGTCGCATGCTGCGCCAGGGGTGTGCG
ACCTCGTTCTTCTTAGCCGAGCCAGCCTTCGACAAGATGCCGAAAGGCGT
CAAAGCCGGGGACCTTTTGACTGGTTCGCTGGTCCTAGAGAAGGCCAAAG
GGAAGGAGCAACCTCAGTCGAGACGGCCCCGCGGTTTCCGTGTATCCTAT
GTTGTTCCTCCCCCTCCACCGGAGGCGCCCAAAGGCCCCAGCAAGCCCAC
GGCTCAAGACAAACGCACGGAGGAAACAAAACTCGAAGAGAAAGTCAGGG
ATGTGAAAGTGCAGCATTTAGGTGGCCTGACAGACAGCACAGCCTTTGAG
AGCTTGTTTAAGAAGCTTTTGGATGATTACCCTGCTCATATTCCCTTGCA
TCAGGCCCGGCTTCGATTTCTGGACGAGGAAAACTCGAGGAATGAGCGCT
TACCTGATGTGGTAAGTGCAGCAAACAGCGTGATAGACTTGGTAGATAGA
CAGGCACTGGCCTCACACTTCGGAGTGAAGGTAGATGAGAACGATCCGGA
GGCAATGAAAGTGCGAGGGGAAATGGAGGAAAAGAAAGCAGCCTTGGTGG
ATGCATTGGCCCGAAAGGCCAGGGCGTTGATTGACAGGAGAGGAGGAGGA
GAAAAGAAAGAGGGTGGGGGTGTCGGACAGCATGTCGAAGTGAGCCCCGA
TGCCGAAAAGCAAGGATCCGATGAGGCTGGAGAAAAGGAAAGAGACGGAG
AGGACCGAAACGGAGATTTGCAAGGCGTGCTTGGCCACGAGGCACGGAAG
AGCGGAGTACATGGGGCCGATGTTGCAGCCGTGGTGGCTGAGCTCATGAA
GTGGGATTCACTGGACCAAGATAAGTACGCACGCCTGTTGTTGGATCGAG
ATGCCGGCTACGGGCGATGGGGCTTGGTTCTCAAGCTTCTGAACAAGCTT
TTGGGTGACGCGGGGAATTCCAGTGGCATCGACAAGAAGGAATTGTACGA
GCGTCGTTTGAACGTCTTCGAGCACCTAGGATGGACGCACTTGATTGAGA
ATGAGCGAAAATGGCGAGTCATCGATTGCCCTACGAGCTACAGCCTCTTC
TGA

Synonyms

Publications