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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100004g24.9130.mrna |
| Orig protein id | gnl|cribi|Naga_100004g24.9130 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:275729..277556 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2393 ID=rna2393|Name=rna2393|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp
CCCGCAACATAGCTTGAAAGGAAACAGTCCTACCCTTGCAAGGGTCCAGT
CTCACACATCCAGTCCATGATCATTCATTATATAAAACGTATATATTAAG
ACGCGAGTCCTTCCACACATTGAAAACGGTCCACATGGCAGCATACACAG
GGTCAGGAGGCAGGAGGTAACACCGTCAAGGAGAATTTGATTGAAGTCTA
CTCCACACACCCACATATCGTCGATGATTACCCACTTTCCAATTTTACTG
CTTTGCCCCAGACTTGTTGGCATCCAATTCAACCTTGTACGTACTCTTGT
ACAATTTTAAGGCGTCGACCAACGCGCTAAGTTGACATTGCGACGTTACC
TCGAGCACATCATTTTGGACCTTCACGAATACTGCGGCATGGAAGGCATC
GGGATAAATGTTAGGATTGCACTCCATCTCCAAACGCGTCTCAAAATCCG
TAACCAAAAACTCTAAAGATGGCTCACGAGGCGCGGGACCTGTCTTATCT
TCAGCTGCATTGGCTGCTTTGATAGCCCTGAACGAAGCAAGAAGAGCGTT
GACTCGCAACGCCAAATCTTTGAAAGTCTCAGGTTTGCAGCGAATTTTTA
AACGCGAATCGTCTCCCATCGGCAGGATGAAGGTCTCCACGACTACAGCA
GGGGACGCACCAACAACTGCGGCGGCAGATGTTTGTACATGCGATACCTG
GTGCTTGGCAGGCAGCACAAAACTGACAGTAGACCGGGCAGCGGTGGCAA
TCGCCAGTAGGAATAGGACAGACCGCATGATAAGCATAAGGTTGAAGAAG
GGCTGTGAAACGAGAATAAGGCGGGGGAAAAAGAAATGTCAGGGAATTCT
TGTGCACATCGAATGGTAAACTTTATGTGATGCTTCCTTCCAATCGTACT
AGAACATGATGTGAGCGTGTTGTACACATATGCTCACGCAGCCTCATAAC
GCGTTGTTTGCAATTGGAAAAGTGAGGTATCTTCCAGTTGAAGCATGGTG
AGGCGGCTTGAACGAGTGGATGCTGCAAGTCATGGATATCCCAACAAAAT
C back to topprotein sequence of rna2393 >rna2393-protein ID=rna2393-protein|Name=rna2393|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MTIGNPFFKWVSQYLRPFLRDRLKPLIDTYAPNKIATLEGPSPVSVASGV
PATRTLQPLFNDLRANVATKSKVKSTVHRMRAGESSACGSMSANSLLIEQ
QQAALLTSALVAAQRKKATSTCTSQPGLSEKTLPSCLQHHQQQQLQLQQN
QREHPHLPEKEVEKAALASTTEEASAPPSSTGEPRVTLSSQQQLEDVQRG
EQRKLNPVDRGGARTKVEVNAPSSSGAASSPRFKRCYYVPVINPLPDLKE
KQLAVLDMRLYGVRDMPTFRELAPSLPPSVLSTAKLRGLTLTQAPEMVAG
MAEQETSAFLSVADVFPMQEREETGVGEAEKEEEGGEEGERAQKEDRWDG
KSPC back to topmRNA from alignment at CM002459.1:275729..277556+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2393 ID=rna2393|Name=rna2393|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp|location=Sequence derived from alignment at CM002459.1:275729..277556+ (Nannochloropsis gaditana)
TCATAGCTCATTTTTTAATGGTTTGCAGATTGAGACAGGGTCTGGTGGCA
ACGTATTCGTCAAGCAGGCAGACGTAGGACGCCCGTAGGCGAAAAGCCGC
CTTTTCTACTACATCGCATCTACCATGACTATCGGCAACCCATTCTTCAA
GTGGGTCAGTCAATACCTGCGGCCCTTTCTACGTGACCGATTAAAACCCC
TCATTGACACGTATGCTCCCAACAAGATTGCCACATTGGAGGGTCCATCG
CCCGTGTCAGTCGCGTCGGGAGTCCCTGCAACTCGTACTCTTCAACCCCT
GTTTAACGATCTTAGGGCAAATGTCGCAACAAAAAGTAAGGTTAAAAGCA
CTGTACATAGAATGAGAGCGGGCGAAAGCAGCGCTTGCGGTAGTATGTCG
GCCAATTCCCTCCTTATCGAGCAGCAACAAGCTGCACTCCTGACTTCTGC
CCTCGTGGCAGCACAGCGCAAGAAGGCGACGAGTACTTGCACGTCACAGC
CTGGTCTCTCAGAAAAGACGCTCCCTTCATGTCTTCAACAtcaccagcag
caacagctgcAGCTGCAGCAAAATCAGCGGGAGCACCCCCACTTGCCTGA
AAAGGAAGTGGAAAAAGCGGCCTTGGCATCGACGACAGAGGAAGCGTccg
cgccgccctcctctacAGGCGAACCACGCGTCACCTTGTCTTCACAGCAA
CAATTGGAAGACGTACAGCGTGGAGAGCAGCGCAAGTTGAACCCTGTAGA
CCGGGGAGGGGCACGGACCAAGGTTGAAGTTAATGCGCCGAGTAGCAGTG
GagccgcatcctccccccgtttCAAGCGTTGCTACTACGTCCCTGTGATC
AATCCCTTGCCCGACCTGAAGGAAAAGCAACTCGCCGTCCTTGACATGCG
CCTGTACGGGGTCCGGGACATGCCAACCTTCCGCGagctcgccccctccc
ttccgccatCCGTGCTGTCCACAGCCAAGCTCCGAGGTCTCACTCTGACT
CAGGCTCCCGAGATGGTCGCTGGCATGGCAGAACAAGAGACGTCGGCTTT
CCTCTCGGTGGCCGATGTCTTCCCCATgcaagagagagaggaaacgggag
tgggcgaggcggagaaggaggaagagggaggcgaggaaggtgagagggCG
CAGAAAGAGGATCGGTGGGACGGGAAAAGTCCTTGTTGATATCACATTGA
TGGTACGCGAAGAAAATGCACAAATCCGGAAGGAAAGCGGGCCTGGAAAA
GGGCAGAGGAAACATGAAATGCACAAATGAAGAGAACTAGGGTCAGAAAG
GACGCATtagaagaaaggaggaggaagagaccgCGAAAGAAGAGTTCTTT
CCTGTGGATGTGGTAGCAAGGTTGCGGTTGGGAGCGAATGTTTCGCAGTT
AGATGACGTCTCCGAGGGCGCACCACCGCTCCGTctgggaaagggtggga
cATGTACAGTACAGTAGGGAAACGGCCTAGTGAGAGCCCACACCAGTATC
ATGCCACAGGTGGCGACTATTTACGAATCGTTATCGGATCTCTAAAGACA
GCGTCGGGCAGCCGGCGGAAAAGGATTGCCTCGATTGTCCGCGGATGGAC
GACTGCGGACATGGAATGATGCCTCGCGTACCCCGCGCGGGTCGAGGCCT
GAAATTGACCCCACAAGTGCCATCCCACGGGCTTTGAAAGCCCAGAAAAC
AAATTTCTGGTCTACCCCTACCTTCACATTGCATGGCAGAGGAGGCTAAA
ACTTGGCGGCAAGAAAAACAGAGGTGCAGGGGGGGCAAAAGCATTGTTTA
AGGACGAAGGTCGTTATTCCTGGCCGCC back to topCoding sequence (CDS) from alignment at CM002459.1:275729..277556+ >rna2393 ID=rna2393|Name=rna2393|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002459.1:275729..277556+ (Nannochloropsis gaditana)
ATGACTATCGGCAACCCATTCTTCAAGTGGGTCAGTCAATACCTGCGGCC
CTTTCTACGTGACCGATTAAAACCCCTCATTGACACGTATGCTCCCAACA
AGATTGCCACATTGGAGGGTCCATCGCCCGTGTCAGTCGCGTCGGGAGTC
CCTGCAACTCGTACTCTTCAACCCCTGTTTAACGATCTTAGGGCAAATGT
CGCAACAAAAAGTAAGGTTAAAAGCACTGTACATAGAATGAGAGCGGGCG
AAAGCAGCGCTTGCGGTAGTATGTCGGCCAATTCCCTCCTTATCGAGCAG
CAACAAGCTGCACTCCTGACTTCTGCCCTCGTGGCAGCACAGCGCAAGAA
GGCGACGAGTACTTGCACGTCACAGCCTGGTCTCTCAGAAAAGACGCTCC
CTTCATGTCTTCAACAtcaccagcagcaacagctgcAGCTGCAGCAAAAT
CAGCGGGAGCACCCCCACTTGCCTGAAAAGGAAGTGGAAAAAGCGGCCTT
GGCATCGACGACAGAGGAAGCGTccgcgccgccctcctctacAGGCGAAC
CACGCGTCACCTTGTCTTCACAGCAACAATTGGAAGACGTACAGCGTGGA
GAGCAGCGCAAGTTGAACCCTGTAGACCGGGGAGGGGCACGGACCAAGGT
TGAAGTTAATGCGCCGAGTAGCAGTGGagccgcatcctccccccgtttCA
AGCGTTGCTACTACGTCCCTGTGATCAATCCCTTGCCCGACCTGAAGGAA
AAGCAACTCGCCGTCCTTGACATGCGCCTGTACGGGGTCCGGGACATGCC
AACCTTCCGCGagctcgccccctcccttccgccatCCGTGCTGTCCACAG
CCAAGCTCCGAGGTCTCACTCTGACTCAGGCTCCCGAGATGGTCGCTGGC
ATGGCAGAACAAGAGACGTCGGCTTTCCTCTCGGTGGCCGATGTCTTCCC
CATgcaagagagagaggaaacgggagtgggcgaggcggagaaggaggaag
agggaggcgaggaaggtgagagggCGCAGAAAGAGGATCGGTGGGACGGG
AAAAGTCCTTGTTGA back to top
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