EWM28318.1, cds2360 (CDS) Nannochloropsis gaditana

Overview
NameEWM28318.1
Unique Namecds2360
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:215810..215910 -
Alignment locationCM002459.1:215148..215694 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28318.1
ProductRibosomal protein S7, conserved site
Orig transcript idgnl|cribi|Naga_100348g1.2077.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:215810..215910 -
CM002459.1supercontigCM002459.1:215148..215694 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020606Ribosomal_S7_CS
IPR023798Ribosomal_S7_dom
IPR005716Ribosomal_S5/S7_euk/arc
IPR000235Ribosomal_S5/S7
Homology
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|585110666|gb|EWM28318.1| (Ribosomal protein S7, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 443.351 bits (1139), Expect = 1.576e-157
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MAEVEIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            MAEVEIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    1 MAEVEIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|298712679|emb|CBJ48704.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 343.969 bits (881), Expect = 5.324e-118
Identity = 164/201 (81.59%), Postives = 184/201 (91.54%), Query Frame = 0
Query:   16 DMAVAFEDNS-ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            D  +A E++  +D++LF KW+  D+EI+D+SLEDYI V GK ATYLPHTAGRYQKKRFRKA CP+VERL  +LMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct:   33 DAPLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|669161044|ref|XP_008616084.1| (40S ribosomal protein S5 [Saprolegnia diclina VS20] >gi|530732249|gb|EQC30491.1| 40S ribosomal protein S5 [Saprolegnia diclina VS20] >gi|1173949907|gb|OQR97903.1| 40S ribosomal protein S5-2 [Achlya hypogyna])

HSP 1 Score: 338.576 bits (867), Expect = 2.244e-116
Identity = 155/193 (80.31%), Postives = 180/193 (93.26%), Query Frame = 0
Query:   23 DNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            + +A++KLF KW+  D+++ D++L DY+ V+GK AT+LPHTA RYQKKRFRKAQCP+VERLANSLMR GRNSGKKL ANRI++HTLEIIHLLTDQNP+QVVVD++INAGPREDSTRVGSAGVVRRQ VD+SPFRRVNQA+YL+TTGARE+SFRN+KTIAE LADE+INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    3 ETAAEVKLFNKWTYDDIKVNDVALIDYVAVSGKAATFLPHTAQRYQKKRFRKAQCPIVERLANSLMRHGRNSGKKLMANRIIRHTLEIIHLLTDQNPLQVVVDAVINAGPREDSTRVGSAGVVRRQGVDVSPFRRVNQALYLLTTGAREASFRNVKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 195          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|1173930540|gb|OQR83329.1| (40S ribosomal protein S5-2 [Thraustotheca clavata])

HSP 1 Score: 337.421 bits (864), Expect = 5.277e-116
Identity = 155/193 (80.31%), Postives = 179/193 (92.75%), Query Frame = 0
Query:   23 DNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            + +A++KLF KW+  DV++ D++L DY+ V GK AT+LPHTA RYQKKRFRKAQCP+VERL+NSLMR GRNSGKKL ANRIV+HTLEIIHLLTDQNP+QVVVD++INAGPREDSTRVGSAGVVRRQ VD+SPFRRVNQA+YL+TTGARE+SFRN+KTIAE LADE++NAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    3 ETAAEVKLFNKWTYDDVKVNDVALIDYVAVTGKAATFLPHTAQRYQKKRFRKAQCPIVERLSNSLMRHGRNSGKKLMANRIVRHTLEIIHLLTDQNPLQVVVDAVINAGPREDSTRVGSAGVVRRQGVDVSPFRRVNQALYLLTTGAREASFRNVKTIAECLADELVNAAKGSSNSYAIKKKDEVERVAKANR 195          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|303285973|ref|XP_003062276.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455793|gb|EEH53095.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 328.561 bits (841), Expect = 1.591e-112
Identity = 152/190 (80.00%), Postives = 175/190 (92.11%), Query Frame = 0
Query:   26 ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            ++IKLFGKW+  DVEI D+SLEDYIGV  K A Y+PHTAGRY +KRFRKAQCP+VERL N+LM  GRN+GKKL A RIVKHT++IIHLL+DQNP+QV+VD+IINAGPRED+TRVGSAGV+RRQAVD+SP RRVNQAIYLITTGARE++FRN+KTIAE LADE+INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:    5 SEIKLFGKWTYDDVEINDISLEDYIGVKSKHAVYVPHTAGRYAQKRFRKAQCPIVERLVNALMMHGRNNGKKLMAVRIVKHTMDIIHLLSDQNPIQVIVDAIINAGPREDATRVGSAGVIRRQAVDISPLRRVNQAIYLITTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKANR 194          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|971507041|dbj|GAQ91161.1| (40S ribosomal protein S5 [Klebsormidium nitens])

HSP 1 Score: 328.176 bits (840), Expect = 2.264e-112
Identity = 152/189 (80.42%), Postives = 173/189 (91.53%), Query Frame = 0
Query:   27 DIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            ++KLFG+WS  DV + D+SLEDYI V  K AT++PHTAGRYQ KRFRKAQCP+VERL NSLM  GRN+GKKL A RIVKH++EIIHLLTDQNP+QVVVD+IIN+GPRED+TR+GSAGVVRRQAVD+SP RRVNQAIYL+TTGARES+FRNIKTIAE LADE+INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:    7 EVKLFGQWSFEDVAVSDISLEDYIAVKPKFATFVPHTAGRYQNKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHSMEIIHLLTDQNPIQVVVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 195          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|255075807|ref|XP_002501578.1| (predicted protein [Micromonas commoda] >gi|226516842|gb|ACO62836.1| predicted protein [Micromonas commoda])

HSP 1 Score: 328.176 bits (840), Expect = 2.978e-112
Identity = 156/199 (78.39%), Postives = 177/199 (88.94%), Query Frame = 0
Query:   17 MAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            MAVA     A+IKLFGKWS  DVEI D+SLEDYIGV  K A Y+PHTAGRY +KRFRKAQCP+ ERL N+LM  GRN+GKKL A RIVKH ++IIHLL+DQNP+QV+VD+IINAGPRED+TRVGSAGV+RRQAVD+SP RRVNQAIYLITTGARE++FRN+KTIAE LADE+INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:    1 MAVA----PAEIKLFGKWSYEDVEINDISLEDYIGVKSKHAVYVPHTAGRYAQKRFRKAQCPITERLVNALMMHGRNNGKKLMAVRIVKHAMDIIHLLSDQNPIQVIVDAIINAGPREDATRVGSAGVIRRQAVDISPLRRVNQAIYLITTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKANR 195          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|397572180|gb|EJK48143.1| (hypothetical protein THAOC_33085 [Thalassiosira oceanica])

HSP 1 Score: 327.791 bits (839), Expect = 9.664e-112
Identity = 152/192 (79.17%), Postives = 174/192 (90.62%), Query Frame = 0
Query:   24 NSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
             + ++KLFGKWS  D+EI+D+SL DYI V G  ATYLPHTAGRYQKKRFRKA CP+VERLA  LMRKGRNSGKKL A RIV+HTLEIIHLLTDQNPVQVVVD+IIN+GPREDSTRVG AGVVRRQAVDMSPFRRVN A+YL+ TGARE+SFRN+KT+AE LA+E++NAA+GSSNSYAIKKKDE+ERV+K+NR
Sbjct:   33 GATEVKLFGKWSFDDIEIRDISLVDYIAVKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 224          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|302830135|ref|XP_002946634.1| (component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] >gi|300268380|gb|EFJ52561.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis])

HSP 1 Score: 326.635 bits (836), Expect = 1.012e-111
Identity = 150/191 (78.53%), Postives = 173/191 (90.58%), Query Frame = 0
Query:   25 SADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            + D+KLFGKWS  D+E++D+SLEDYI V  K A Y+PHTAGRYQKKRFRKA CP+VERL NSLM  GRN+GKKL A RIVKH  +IIHLLTDQNP+QV+VD+IIN+GPRED+TR+GSAGVVRRQAVD+SP RRVNQAIYL+TTGARE++FRNIKTIAE LADE++NAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct:    3 TPDVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193          
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|673051697|ref|XP_008879809.1| (40S ribosomal protein [Aphanomyces invadans] >gi|698791798|ref|XP_009828931.1| 40S ribosomal protein [Aphanomyces astaci] >gi|574115588|gb|ETV81073.1| 40S ribosomal protein [Aphanomyces astaci] >gi|574464494|gb|ETV91541.1| 40S ribosomal protein [Aphanomyces invadans])

HSP 1 Score: 326.635 bits (836), Expect = 1.280e-111
Identity = 149/191 (78.01%), Postives = 175/191 (91.62%), Query Frame = 0
Query:   25 SADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
            +A++KLF KW+  D+++ D++L DY+ V GK AT+LPHTA RYQKKRFRKA CP+VERL NSLMR GRNSGKKL A RI++HTLEIIHLLTDQNP+QV+VD++INAGPREDSTRVGSAGVVRRQ VD+SPFRRVNQA+YL++TGARE++FRN+KTIAE LADE+INAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    5 AAEVKLFNKWTYDDIKVNDVALIDYVAVTGKAATFLPHTAQRYQKKRFRKALCPIVERLGNSLMRHGRNSGKKLMATRILRHTLEIIHLLTDQNPLQVLVDAVINAGPREDSTRVGSAGVVRRQGVDVSPFRRVNQALYLLSTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 195          
The following BLAST results are available for this feature:
BLAST of EWM28318.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110666|gb|EWM28318.1|1.576e-157100.00Ribosomal protein S7, conserved site [Nannochlorop... [more]
gi|298712679|emb|CBJ48704.1|5.324e-11881.59conserved unknown protein [Ectocarpus siliculosus][more]
gi|669161044|ref|XP_008616084.1|2.244e-11680.3140S ribosomal protein S5 [Saprolegnia diclina VS20... [more]
gi|1173930540|gb|OQR83329.1|5.277e-11680.3140S ribosomal protein S5-2 [Thraustotheca clavata][more]
gi|303285973|ref|XP_003062276.1|1.591e-11280.00predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|971507041|dbj|GAQ91161.1|2.264e-11280.4240S ribosomal protein S5 [Klebsormidium nitens][more]
gi|255075807|ref|XP_002501578.1|2.978e-11278.39predicted protein [Micromonas commoda] >gi|2265168... [more]
gi|397572180|gb|EJK48143.1|9.664e-11279.17hypothetical protein THAOC_33085 [Thalassiosira oc... [more]
gi|302830135|ref|XP_002946634.1|1.012e-11178.53component of cytosolic 80S ribosome and 40S small ... [more]
gi|673051697|ref|XP_008879809.1|1.280e-11178.0140S ribosomal protein [Aphanomyces invadans] >gi|6... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2368rna2368Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications