EWM28316.1, cds2358 (CDS) Nannochloropsis gaditana

Overview
NameEWM28316.1
Unique Namecds2358
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:209578..209626 -
Alignment locationCM002459.1:208931..209136 -
Alignment locationCM002459.1:208266..208876 -
Alignment locationCM002459.1:207454..208159 -
Alignment locationCM002459.1:206183..207346 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28316.1
ProductNucleotide-binding protein
Orig transcript idgnl|cribi|Naga_100348g3.2075.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:209578..209626 -
CM002459.1supercontigCM002459.1:208931..209136 -
CM002459.1supercontigCM002459.1:208266..208876 -
CM002459.1supercontigCM002459.1:207454..208159 -
CM002459.1supercontigCM002459.1:206183..207346 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|585110664|gb|EWM28316.1| (Nucleotide-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1794.63 bits (4647), Expect = 0.000e+0
Identity = 911/911 (100.00%), Postives = 911/911 (100.00%), Query Frame = 0 
Query:    1 MAGACACLVFFETFGHVPQSLEDLLEPVRLAFIASSVHNFDERDNRRGFLHVQRLVRWYRAREQGSSSVVPGHGLHRLPGRPHVLAACGKSNFCGDIAYTPARHLFPSMACPPYYDRPTPNPGGGRRSRQGSIASIPVSHAGHSSPYQRDTSDGRPQASSPSYGPGAGEETVGHYPPSHHHPHPSHFSRPGTEGPYAEGMTGRNSSPRQHPQPPSYTVPGSTHPYYPHHPSYGLGGGPGEMAMPVSEHLGHYRVPHAYHGPPYPDNHPPPHHANLPPPHSPQQQHGFDPAHRPSPPRSRPAPGALICPPPAINTSLASSTVSSSGMHSYPAHPYPAPHVTSSSVTTSFPDVNQATPAALTVTSSGGIPLLEYVDREGSTCIIYEVPTAFSEAALACAGPEGYPPWSPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPSVCLDEEGRAGRGGSQEGGKEGGGEGGREGRGRSWHHGEAYEAPRPASQASDVTFSSSSSSASFPHLPRGRNLKDGEGGRGIYTSGYRPPFQGGRGRGAGGRGPASSYAASSYPPYRERGGRGRANAFYLPPYPHAPLEAFPPRYYEPPYPSYADQSPYPPHLPPHSHPGAGMPSSTPPHYSPYMGGGDLPPSLPPSLPPPSYFPSYGPLPSRSYAGEGGARGEEGEMAFYTHGYPSAERGRGRGWYRGRGGGRGGGRGYFRVSAPPEDRYHRLSSHSSYRQGRADTGKEEEGREGAGEGGREGGVDRPSLTIDDLSGLTLEGNEEAEGGREEGPRQGMAEVEEGGEGEEGEPWEVASPLPGGGGGEGGGEGEGGTKGLTAGDQTPRPSSTAAGSTTTSPGDG 911
            MAGACACLVFFETFGHVPQSLEDLLEPVRLAFIASSVHNFDERDNRRGFLHVQRLVRWYRAREQGSSSVVPGHGLHRLPGRPHVLAACGKSNFCGDIAYTPARHLFPSMACPPYYDRPTPNPGGGRRSRQGSIASIPVSHAGHSSPYQRDTSDGRPQASSPSYGPGAGEETVGHYPPSHHHPHPSHFSRPGTEGPYAEGMTGRNSSPRQHPQPPSYTVPGSTHPYYPHHPSYGLGGGPGEMAMPVSEHLGHYRVPHAYHGPPYPDNHPPPHHANLPPPHSPQQQHGFDPAHRPSPPRSRPAPGALICPPPAINTSLASSTVSSSGMHSYPAHPYPAPHVTSSSVTTSFPDVNQATPAALTVTSSGGIPLLEYVDREGSTCIIYEVPTAFSEAALACAGPEGYPPWSPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPSVCLDEEGRAGRGGSQEGGKEGGGEGGREGRGRSWHHGEAYEAPRPASQASDVTFSSSSSSASFPHLPRGRNLKDGEGGRGIYTSGYRPPFQGGRGRGAGGRGPASSYAASSYPPYRERGGRGRANAFYLPPYPHAPLEAFPPRYYEPPYPSYADQSPYPPHLPPHSHPGAGMPSSTPPHYSPYMGGGDLPPSLPPSLPPPSYFPSYGPLPSRSYAGEGGARGEEGEMAFYTHGYPSAERGRGRGWYRGRGGGRGGGRGYFRVSAPPEDRYHRLSSHSSYRQGRADTGKEEEGREGAGEGGREGGVDRPSLTIDDLSGLTLEGNEEAEGGREEGPRQGMAEVEEGGEGEEGEPWEVASPLPGGGGGEGGGEGEGGTKGLTAGDQTPRPSSTAAGSTTTSPGDG
Sbjct:    1 MAGACACLVFFETFGHVPQSLEDLLEPVRLAFIASSVHNFDERDNRRGFLHVQRLVRWYRAREQGSSSVVPGHGLHRLPGRPHVLAACGKSNFCGDIAYTPARHLFPSMACPPYYDRPTPNPGGGRRSRQGSIASIPVSHAGHSSPYQRDTSDGRPQASSPSYGPGAGEETVGHYPPSHHHPHPSHFSRPGTEGPYAEGMTGRNSSPRQHPQPPSYTVPGSTHPYYPHHPSYGLGGGPGEMAMPVSEHLGHYRVPHAYHGPPYPDNHPPPHHANLPPPHSPQQQHGFDPAHRPSPPRSRPAPGALICPPPAINTSLASSTVSSSGMHSYPAHPYPAPHVTSSSVTTSFPDVNQATPAALTVTSSGGIPLLEYVDREGSTCIIYEVPTAFSEAALACAGPEGYPPWSPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPSVCLDEEGRAGRGGSQEGGKEGGGEGGREGRGRSWHHGEAYEAPRPASQASDVTFSSSSSSASFPHLPRGRNLKDGEGGRGIYTSGYRPPFQGGRGRGAGGRGPASSYAASSYPPYRERGGRGRANAFYLPPYPHAPLEAFPPRYYEPPYPSYADQSPYPPHLPPHSHPGAGMPSSTPPHYSPYMGGGDLPPSLPPSLPPPSYFPSYGPLPSRSYAGEGGARGEEGEMAFYTHGYPSAERGRGRGWYRGRGGGRGGGRGYFRVSAPPEDRYHRLSSHSSYRQGRADTGKEEEGREGAGEGGREGGVDRPSLTIDDLSGLTLEGNEEAEGGREEGPRQGMAEVEEGGEGEEGEPWEVASPLPGGGGGEGGGEGEGGTKGLTAGDQTPRPSSTAAGSTTTSPGDG 911
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|1210531772|dbj|GAX09739.1| (hypothetical protein FisN_19Lh208 [Fistulifera solaris])

HSP 1 Score: 142.124 bits (357), Expect = 6.375e-32
Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 0 
Query:  399 PEGYPPWSPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPSVCLDEEGRAGRG---GSQEGG 527
            P+ +P  SPG PIQT         GPDG NLFVFH+P+NF+N D +NLF  YG ++SVRIMVE+ TGRSRGFGFVS+D+  +A  AI+ L+GY +G+KRLKVQHK++ S     D EG  G     GS EG 
Sbjct:  318 PQYFPASSPGPPIQTTASN----KGPDGANLFVFHIPNNFTNMDMYNLFCRYGNLLSVRIMVERDTGRSRGFGFVSYDNAASAAQAIQELNGYAIGNKRLKVQHKQIRSRDNA-DREGVEGVSYDHGSDEGN 444
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|301108523|ref|XP_002903343.1| (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >gi|262097715|gb|EEY55767.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 135.191 bits (339), Expect = 7.746e-32
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 0 
Query:  401 GYPPWS--PGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMES 507
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK +S
Sbjct:  125 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKS 229
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|301108515|ref|XP_002903339.1| (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >gi|262097711|gb|EEY55763.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 135.191 bits (339), Expect = 8.566e-32
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 0 
Query:  401 GYPPWS--PGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMES 507
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK +S
Sbjct:  120 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKS 224
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|970659717|gb|KUF97331.1| (hypothetical protein AM588_10011703 [Phytophthora nicotianae])

HSP 1 Score: 134.42 bits (337), Expect = 1.209e-31
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 0 
Query:  401 GYPPWS--PGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPS 509
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK ++ S
Sbjct:  111 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKNQS 217
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|567967341|gb|ETK92521.1| (hypothetical protein L915_04208 [Phytophthora parasitica] >gi|567995800|gb|ETL45930.1| hypothetical protein L916_04162 [Phytophthora parasitica] >gi|568051022|gb|ETM47942.1| hypothetical protein L914_07471 [Phytophthora parasitica] >gi|570957524|gb|ETP22503.1| hypothetical protein F441_04299 [Phytophthora parasitica CJ01A1] >gi|570992969|gb|ETP50385.1| hypothetical protein F442_04320 [Phytophthora parasitica P10297] >gi|970635544|gb|KUF80411.1| CUGBP Elav family member 2 [Phytophthora nicotianae] >gi|970663193|gb|KUG00428.1| CUGBP Elav family member 2 [Phytophthora nicotianae])

HSP 1 Score: 134.806 bits (338), Expect = 1.244e-31
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 0 
Query:  401 GYPPWS--PGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPS 509
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK ++ S
Sbjct:  125 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKNQS 231
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|675191011|ref|XP_008904390.1| (hypothetical protein PPTG_10740 [Phytophthora parasitica INRA-310] >gi|566025322|gb|ETI48233.1| hypothetical protein F443_07724 [Phytophthora parasitica P1569] >gi|568020596|gb|ETL94723.1| hypothetical protein L917_07384 [Phytophthora parasitica] >gi|568095185|gb|ETN09953.1| hypothetical protein PPTG_10740 [Phytophthora parasitica INRA-310] >gi|570328957|gb|ETO76905.1| hypothetical protein F444_07791 [Phytophthora parasitica P1976])

HSP 1 Score: 134.806 bits (338), Expect = 1.423e-31
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 0 
Query:  401 GYPPWS--PGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMESPS 509
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK ++ S
Sbjct:  125 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKNQS 231
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|1214713719|gb|OWZ24601.1| (hypothetical protein PHMEG_000277 [Phytophthora megakarya])

HSP 1 Score: 134.035 bits (336), Expect = 1.830e-31
Identity = 64/109 (58.72%), Postives = 81/109 (74.31%), Query Frame = 0 
Query:  401 GYPPW--SPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMES 507
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK ++
Sbjct:  121 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKN 225
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|695427139|ref|XP_009529602.1| (hypothetical protein PHYSODRAFT_346711 [Phytophthora sojae] >gi|348676035|gb|EGZ15853.1| hypothetical protein PHYSODRAFT_346711 [Phytophthora sojae])

HSP 1 Score: 134.42 bits (337), Expect = 1.903e-31
Identity = 64/106 (60.38%), Postives = 79/106 (74.53%), Query Frame = 0 
Query:  401 GYPPW--SPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKK 504
            GYPP    PG PIQT   G     GP GCNLFVFH+P++ +N D FN F+ +G +IS RIMVEK TGRSRGFGFVS+D+  +AE AI+ ++G+Q+G KRLKVQHKK
Sbjct:  127 GYPPQIVGPGPPIQTTESGQ----GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKK 228
[Close]
BLAST of EWM28316.1 vs. NCBI_GenBank
Match: gi|1210521638|dbj|GAX19628.1| (hypothetical protein FisN_19Hh208 [Fistulifera solaris])

HSP 1 Score: 140.969 bits (354), Expect = 1.916e-31
Identity = 64/109 (58.72%), Postives = 82/109 (75.23%), Query Frame = 0 
Query:  399 PEGYPPWSPGAPIQTVRDGDVVTSGPDGCNLFVFHLPSNFSNADCFNLFSAYGTIISVRIMVEKGTGRSRGFGFVSFDSETAAELAIEMLDGYQLGHKRLKVQHKKMES 507
            P+ +P  SPG PIQT         GPDG NLFVFH+P+NF+N D +NLF  YG ++SVRIMVE+ TGRSRGFGFVS+D+  +A  AI+ L+GY +G+KRLKVQHK++ S
Sbjct:  326 PQYFPASSPGPPIQTT----ASNKGPDGANLFVFHIPNNFTNMDMYNLFCRYGNLLSVRIMVERDTGRSRGFGFVSYDNAASAAQAIQELNGYAVGNKRLKVQHKQIRS 430
The following BLAST results are available for this feature:
BLAST of EWM28316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110664|gb|EWM28316.1|0.000e+0100.00Nucleotide-binding protein [Nannochloropsis gadita... [more]
gi|1210531772|dbj|GAX09739.1|6.375e-3254.55hypothetical protein FisN_19Lh208 [Fistulifera sol... [more]
gi|301108523|ref|XP_002903343.1|7.746e-3259.63CUG-BP- and ETR-3-like factor, putative [Phytophth... [more]
gi|301108515|ref|XP_002903339.1|8.566e-3259.63CUG-BP- and ETR-3-like factor, putative [Phytophth... [more]
gi|970659717|gb|KUF97331.1|1.209e-3158.56hypothetical protein AM588_10011703 [Phytophthora ... [more]
gi|567967341|gb|ETK92521.1|1.244e-3158.56hypothetical protein L915_04208 [Phytophthora para... [more]
gi|675191011|ref|XP_008904390.1|1.423e-3158.56hypothetical protein PPTG_10740 [Phytophthora para... [more]
gi|1214713719|gb|OWZ24601.1|1.830e-3158.72hypothetical protein PHMEG_000277 [Phytophthora me... [more]
gi|695427139|ref|XP_009529602.1|1.903e-3160.38hypothetical protein PHYSODRAFT_346711 [Phytophtho... [more]
gi|1210521638|dbj|GAX19628.1|1.916e-3158.72hypothetical protein FisN_19Hh208 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2366rna2366Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications