EWM28321.1, cds2339 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28321.1 vs. NCBI_GenBank
Match: gi|585110670|gb|EWM28321.1| (hypothetical protein Naga_100109g17 [Nannochloropsis gaditana]) HSP 1 Score: 777.704 bits (2007), Expect = 0.000e+0 Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0
Query: 1 MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVVRQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGFEEL 372
MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVVRQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGFEEL
Sbjct: 1 MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVVRQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGFEEL 372
BLAST of EWM28321.1 vs. NCBI_GenBank
Match: gi|397635672|gb|EJK71960.1| (hypothetical protein THAOC_06552 [Thalassiosira oceanica]) HSP 1 Score: 255.758 bits (652), Expect = 4.767e-78 Identity = 138/310 (44.52%), Postives = 184/310 (59.35%), Query Frame = 0
Query: 68 IPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGA--VE----KTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYK--PLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGF 369
+P + P+SFG CCGIGHRL RNLP +VY ++ A W DV WD +F D+D V AG + E+F N P++WS E+P A VE + GT + Y D +FE W+VV+ L +LS VL +DP R+QY+ LH+C H R GNNE GDWE K WR ++ I TL AM+ A +++V+VFV SD+ WF HVP+GW V+ +PE GVWFG+ S T+A L+Q+E++ AMAEAVAD+F LGEC AL++P +SSFS GI T+ VFF L+ F
Sbjct: 78 MPLPPPLESNPPISFGGCCGIGHRLGRNLPAIVYGVTRRARLVAAWDDVKWDVLFNDNDFVVAGKRQAENFDNGVPEDWS---ENPMAWRVETGPMREGTPYERY-GQDSRYLFEMGLAWSVVNMLRKNLSPLVLSFLDPMREQYRDSELHVCTHIRQGNNETGDWERKKWRHIDFETIANATLAAMRHHAVV-SGATKVTVFVASDSGKTRPWFESHVPEGWSVVRPGRVLPRPERGVWFGEAMSPTNAVLSQKERDEAMAEAVADVFALGECDALYLPNFSSFSQVGIMLTRAEGNRVFFMDLKRHDF 382
BLAST of EWM28321.1 vs. NCBI_GenBank
Match: gi|397646831|gb|EJK77445.1| (hypothetical protein THAOC_00725, partial [Thalassiosira oceanica]) HSP 1 Score: 207.223 bits (526), Expect = 1.051e-57 Identity = 125/305 (40.98%), Postives = 159/305 (52.13%), Query Frame = 0
Query: 68 IPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKR-FAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYK--PLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGF 369
+P A+ VS G CCGIGHRL NLP +V+ +R A W D V + K G E GT D Y D +FE W+VV+ L +LS V +DP R+QY+ LH+C H R GNNE GDWE K WR ++ + TL AM+ A E +++V+VFV SD+ WF HVP+GW ++ KPESGVWFG+ GS TSA L+Q+E++ AMAEAVAD+F LGEC AL+VP YSSFS GI T+ V F L F
Sbjct: 277 MPPPRALESNGLVSSGGCCGIGHRLGLNLPAIVHGGITRRTLLVAAWNDP------VGVEGGKTGPMRE------------------------GTPYDRYGQ-DSRYLFEMGLAWSVVNMLRDNLSPLVRSFLDPMREQYRDSELHVCTHIRQGNNETGDWERKKWRHIDFGTVANATLAAMRRHA-EASGATKVTVFVASDSDSARPWFEAHVPEGWELVRPGRVLPKPESGVWFGESGSTTSAVLSQKERDDAMAEAVADVFALGECDALYVPNYSSFSQVGIMLTRGEGNRVLFMDLTRHDF 549 The following BLAST results are available for this feature:
BLAST of EWM28321.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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