rna2344, rna2344 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2344
Unique Name	rna2344
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	744
Alignment location	CM002459.1:154680..157600 -

Link to JBrowse

Properties


Property Name	Value
Product	o-phosphoseryl-trna selenium transferase
Orig transcript id	gnl\|cribi\|Naga_100109g21.6597.mrna
Orig protein id	gnl\|cribi\|Naga_100109g21.6597
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:154680..157600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g21	gene2240	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28329.1	cds2336	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2344	rna2344-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:154680..157600-
coding sequence from alignment at CM002459.1:154680..157600-

mRNA sequence

>rna2344 ID=rna2344|Name=rna2344|organism=Nannochloropsis gaditana|type=mRNA|length=744bp
ATGGGAGACTCTACATTGGTGCAGGATGTGCACAAAGGCCATCGACCGCG
GCAAGCGGGGGCCAAGGCAAAAAAGAAAGAGGCGCACCAAAAGAAAAAAA
AAGGGTTGTCCACGGAGCGGCATAACCCCCGGGCCTTCTCAGTGGCCAAT
ATCAAACGCACCCAACGCAATACACAGCGAAACCTTGACCGAGCACAGCA
AAAAGAGCACGTCCCGCTCGTGGATCGCACCGAAGCCTTGCCCCCTCCCT
CCCTCGTCGTGGTCATGGGGCCCAAGGGATGTGGAAAGTCGACCCTAATC
CGTTCCCTCGTCAAGTACTACACGCGGCAGAACCTCTCCGACGTGCTCGG
GCCGATCACAGTAGTTGCAGGAAAAGCTAAGCGGCTCACTTTCTTTGAGT
GCCCGGGCGATGATCTGTGCGCCATGCTGGACCTGGCAAAGACAGCTGAC
CTAGTGCTGCTGATGGTGGATGGCTCCTTTGGCTTCGAAATGGAGACGTT
TGAATTTTTAAACATGTTGCAGACACACGGGTTCCCCAAAGTGATGGGTG
TGATGTCCCACCTGGACGGCTTGAAGAACAACAAGGCGCTGGGCAAGACC
AAGAAGCGTCTGAAGCAACGGTTTTGGACAGAGATCTACCAGGGCGCGAA
AATGTTTTATTTGTCGGGGGTCATCAACCACAAGTACTTGAAGGGCGAAA
TCCGAAATATTACCCTCTACATATCCCGCATGGTGGGGGGAAAG

protein sequence of rna2344

>rna2344-protein ID=rna2344-protein|Name=rna2344|organism=Nannochloropsis gaditana|type=polypeptide|length=772bp
MDANDATLAANCAGLGVPATYVTQGLEAGVRKRHGYFRRLVSHRRLPPDG
WDDATIEGVLHDLAMMDSNNFLGNVGVGEREARVYSSLVRRRHYGLGHGM
GRSGDIMEPQPKAAGSSLLVKLTNLLALDAVRAAGLTRMQDCVVLPLATG
MAVTVTLLTLRHESAVSTPTPAPAPTPSSSIASASSVSTKMSGAIPTSTP
SPGLPRPKPFLPPLPPSLPPSLPSSLPAKVYVVFPRIDQKSCLKSIVTAG
LRPLILPMRQSFLNDELETDLPLLHSHLLHHHDQILAVLSTTSCFAPRAP
DNVVGIARLCASFQIHHVVNNAYGLQCSRTAHALNEACRLGRVDAVVHST
DKNFLVPVGGAIVVAPAPVGGGREGMREGGWEDGAEHVREAPAGRAVGRR
VPSQGQKEGGGEGGREGQDAQSQREVENGRREVSPASGGAGEESSRVESR
GARESGGRDEGGPGSRGGSCPRTEKTQDQGSGTSSCPRAESRLRRGLHAS
TAPGRKSLIDRLGKMYPGRANATPLHDLFITLLSMGRNGYLKLLRERNAL
IPVMRGGLQGVAEKHQCRLLETPRNSISFAITLNGLLREDGDGQEEEAGG
EGGLSFLGSMLFARGVSGTRVVIPVKVSPSSPASSSSSSSSSSSSSPSSS
SFSATSASSVHVPTSRGPSKSITPPPVKIVAGVPFLGYGSHTNEAYPPGP
YLTAACALGITKDEVEEFLRRLDRTLSEFQKKRGKVGAETWERLEEKKEQ
QARKGGGDNTKEQGRNMKHEDS

mRNA from alignment at CM002459.1:154680..157600-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2344 ID=rna2344|Name=rna2344|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp|location=Sequence derived from alignment at CM002459.1:154680..157600- (Nannochloropsis gaditana)
AGAGCATATGGCAATACCCCCGCCCGTCGTCACACTCATTGCTTATACAC
TACTACCACGCCTAGTCAAGTTCTCCTTATATGTCCAGACGTTAGGACGG
GCATTCGTCCCCAAACAAGGCAGTCTTGGTGTCAGAACACGGAGACCACG
GGCGCCATGAGACACCTCTCTCCGGTTTTGATTGCTTGCGCGTGCTTGGG
CGAGTTGCACATGGACATGCGGTGATCAAAGCCTCGCTTAATGCAAGTCA
AGACATGGCGAGGGCACTTCACCATCAGCACCACCTCGTGTGACCCTTTA
CAGGCTGTCGACGCTCCATGCGTCAGGAATGTGCGTTACAAGATTGCCGA
TTTACCAATTTAATTCGTCTCATCCGATCTCGGGGACCCTGCGAGAGACG
CGACGAGCAGCTACTCTCGCTTCTGCCTAACCCTTTTGCAGCCCTTTTTC
CCCCCGGGAAGCTTGTGAAATGGACGCGAATGATGCAACTTTAGCAGCCA
ACTGCGCAGGGTTGGGTGTACCTGCGACTTATGTGACGCAAGGGTTGGAA
GCAGGTGTTCGGAAACGCCACGGCTATTTTCGGCGGCTGGTCTCTCACCG
GCGCTTGCCACCTGACGGCTGGGATGATGCCACCATCGAAGGCGTCCTGC
ACGATCTCGCCATGATGGACAGCAACAATTTTCTGGGTAACGTTGGTGTT
GGTGAGAGGGAGGCACGCGTCTATTCTTCCTTGGTGCGACGACGACATTA
CGGGCTCGGCCATGGGATGGGGCGGTCGGGAGATATCATGGAGCCGCAAC
CGAAAGCGGCGGGCTCCTCCCTCCTCGTGAAGCTCACCAACCTGCTCGCG
TTGGACGCAGTGCGGGCAGCAGGGTTGACGCGCATGCAGGATTGTGTGGT
GCTGCCTTTGGCCACGGGGATGGCCGTGACCGTGACGCTTTTAACCCTGC
GGCACGAGAGCGCCGTTTCGACCCCCACACCCGCCCCCGCCCCCACACCC
TCCTCCTCCATCGCCTCCGCCTCCTCGGTCTCGACGAAAATGAGCGGGGC
CATCCCCACGTCCACCCCTTCCCCGGGCCTCCCACGGCCAAAGCCCTTCC
TCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCTCCCTTCCT
GCCAAAGTATACGTCGTTTTCCCACGAATCGACCAAAAGTCCTGTTTAAA
ATCTATTGTAACGGCGGGTCTCCGTCCACTTATTCTTCCCATGCGCCAAT
CTTTCCTCAACGACGAGCTCGAGACAGACCTTCCCCTCCTCCATTCCCAC
CTCCTCCACCACCACGACCAAATTTTAGCCGTCCTCTCCACCACCTCCTG
CTTTGCCCCCCGCGCGCCCGACAACGTCGTGGGCATCGCGCGTCTCTGTG
CCAGCTTCCAGATCCATCACGTCGTGAACAACGCCTACGGTCTGCAATGT
TCCCGCACCGCCCATGCCCTCAACGAGGCCTGTCGGCTGGGGAGAGTAGA
CGCAGTAGTGCACAGCACCGACAAAAATTTCCTGGTCCCGGTGGGAGGCG
CGATCGTGGTGGCGCCTGCACCCGTGGGGGGAGGGAGGGAGGGAATGAGG
GAGGGAGGATGGGAGGATGGTGCGGAGCACGTCCGGGAGGCGCCGGCGGG
GCGGGCAGTGGGAAGACGGGTGCCGAGCCAAGGACAGAAAGAGGGAGGAG
GGGAGGGAGGGCGCGAAGGCCAGGATGCGCAAAGCCAGAGGGAGGTGGAA
AACGGGAGGCGGGAAGTAAGCCCGGCGAGCGGGGGGGCTGGGGAGGAGTC
CTCAAGGGTGGAGTCGAGGGGCGCTAGGGAAAGCGGAGGACGAGACGAGG
GCGGTCCGGGTAGCAGGGGGGGCAGCTGTCCACGCACGGAGAAGACGCAG
GACCAGGGGAGCGGCACAAGCTCCTGCCCCAGGGCCGAGAGCCGCCTTCG
GCGTGGCCTCCATGCCAGCACGGCTCCGGGTAGGAAGAGCCTGATCGATC
GACTCGGGAAAATGTACCCAGGCCGTGCCAATGCCACCCCTCTCCACGAC
CTCTTCATCACCCTCCTCTCCATGGGCCGCAACGGCTATTTGAAATTATT
GCGCGAACGTAACGCCCTGATTCCCGTGATGAGAGGGGGATTACAGGGGG
TGGCGGAGAAACACCAGTGTCGATTGTTAGAGACGCCGCGAAACTCGATT
TCCTTCGCTATTACCTTGAATGGACTTTTGAGGGAAGATGGAGACGGGCA
AGAAGAAGAAGCAGGGGGAGAGGGAGGGCTTTCCTTCCTGGGCTCCATGC
TCTTTGCACGCGGAGTTTCGGGGACGCGCGTGGTCATCCCTGTTAAGGTT
TCCCCTTCCTCCCCCGCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTC
CTCCTCCCCTTCCTCCTCCTCCTTCTCCGCCACCTCTGCTTCCTCCGTGC
ACGTCCCAACCTCCCGAGGACCTTCCAAATCCATCACGCCCCCTCCGGTC
AAGATCGTCGCGGGCGTCCCTTTCTTGGGGTACGGGTCCCACACCAACGA
AGCCTACCCCCCTGGCCCATATTTGACGGCGGCCTGCGCCCTGGGAATCA
CGAAGGACGAGGTGGAGGAATTTTTAAGGCGCTTGGATCGGACTTTGTCG
GAGTTCCAAAAAAAAAGGGGAAAAGTCGGGGCAGAGACCTGGGAGAGACT
TGAGGAAAAGAAGGAACAGCAGGCGCGGAAGGGAGGAGGTGATAACACGA
AGGAACAGGGAAGAAACATGAAGCATGAAGATAGTTAGGGCCTGTGCAGG
CTTTTGACCGTGCGTTGGGAGGCTTCCTGCCAGTCTCGCTTGCATTCATG
GCCACCACGTGAGGGAACGAGGCGGTGGCTGAGCACCCACCCATTCCCCC
TGTGCCAGCCAGCCAGACCGT

Coding sequence (CDS) from alignment at CM002459.1:154680..157600-

>rna2344 ID=rna2344|Name=rna2344|organism=Nannochloropsis gaditana|type=CDS|length=2319bp|location=Sequence derived from alignment at CM002459.1:154680..157600- (Nannochloropsis gaditana)
ATGGACGCGAATGATGCAACTTTAGCAGCCAACTGCGCAGGGTTGGGTGT
ACCTGCGACTTATGTGACGCAAGGGTTGGAAGCAGGTGTTCGGAAACGCC
ACGGCTATTTTCGGCGGCTGGTCTCTCACCGGCGCTTGCCACCTGACGGC
TGGGATGATGCCACCATCGAAGGCGTCCTGCACGATCTCGCCATGATGGA
CAGCAACAATTTTCTGGGTAACGTTGGTGTTGGTGAGAGGGAGGCACGCG
TCTATTCTTCCTTGGTGCGACGACGACATTACGGGCTCGGCCATGGGATG
GGGCGGTCGGGAGATATCATGGAGCCGCAACCGAAAGCGGCGGGCTCCTC
CCTCCTCGTGAAGCTCACCAACCTGCTCGCGTTGGACGCAGTGCGGGCAG
CAGGGTTGACGCGCATGCAGGATTGTGTGGTGCTGCCTTTGGCCACGGGG
ATGGCCGTGACCGTGACGCTTTTAACCCTGCGGCACGAGAGCGCCGTTTC
GACCCCCACACCCGCCCCCGCCCCCACACCCTCCTCCTCCATCGCCTCCG
CCTCCTCGGTCTCGACGAAAATGAGCGGGGCCATCCCCACGTCCACCCCT
TCCCCGGGCCTCCCACGGCCAAAGCCCTTCCTCCCTCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCCCTCCTCCCTTCCTGCCAAAGTATACGTCGTTT
TCCCACGAATCGACCAAAAGTCCTGTTTAAAATCTATTGTAACGGCGGGT
CTCCGTCCACTTATTCTTCCCATGCGCCAATCTTTCCTCAACGACGAGCT
CGAGACAGACCTTCCCCTCCTCCATTCCCACCTCCTCCACCACCACGACC
AAATTTTAGCCGTCCTCTCCACCACCTCCTGCTTTGCCCCCCGCGCGCCC
GACAACGTCGTGGGCATCGCGCGTCTCTGTGCCAGCTTCCAGATCCATCA
CGTCGTGAACAACGCCTACGGTCTGCAATGTTCCCGCACCGCCCATGCCC
TCAACGAGGCCTGTCGGCTGGGGAGAGTAGACGCAGTAGTGCACAGCACC
GACAAAAATTTCCTGGTCCCGGTGGGAGGCGCGATCGTGGTGGCGCCTGC
ACCCGTGGGGGGAGGGAGGGAGGGAATGAGGGAGGGAGGATGGGAGGATG
GTGCGGAGCACGTCCGGGAGGCGCCGGCGGGGCGGGCAGTGGGAAGACGG
GTGCCGAGCCAAGGACAGAAAGAGGGAGGAGGGGAGGGAGGGCGCGAAGG
CCAGGATGCGCAAAGCCAGAGGGAGGTGGAAAACGGGAGGCGGGAAGTAA
GCCCGGCGAGCGGGGGGGCTGGGGAGGAGTCCTCAAGGGTGGAGTCGAGG
GGCGCTAGGGAAAGCGGAGGACGAGACGAGGGCGGTCCGGGTAGCAGGGG
GGGCAGCTGTCCACGCACGGAGAAGACGCAGGACCAGGGGAGCGGCACAA
GCTCCTGCCCCAGGGCCGAGAGCCGCCTTCGGCGTGGCCTCCATGCCAGC
ACGGCTCCGGGTAGGAAGAGCCTGATCGATCGACTCGGGAAAATGTACCC
AGGCCGTGCCAATGCCACCCCTCTCCACGACCTCTTCATCACCCTCCTCT
CCATGGGCCGCAACGGCTATTTGAAATTATTGCGCGAACGTAACGCCCTG
ATTCCCGTGATGAGAGGGGGATTACAGGGGGTGGCGGAGAAACACCAGTG
TCGATTGTTAGAGACGCCGCGAAACTCGATTTCCTTCGCTATTACCTTGA
ATGGACTTTTGAGGGAAGATGGAGACGGGCAAGAAGAAGAAGCAGGGGGA
GAGGGAGGGCTTTCCTTCCTGGGCTCCATGCTCTTTGCACGCGGAGTTTC
GGGGACGCGCGTGGTCATCCCTGTTAAGGTTTCCCCTTCCTCCCCCGCTT
CCTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCCCTTCCTCCTCC
TCCTTCTCCGCCACCTCTGCTTCCTCCGTGCACGTCCCAACCTCCCGAGG
ACCTTCCAAATCCATCACGCCCCCTCCGGTCAAGATCGTCGCGGGCGTCC
CTTTCTTGGGGTACGGGTCCCACACCAACGAAGCCTACCCCCCTGGCCCA
TATTTGACGGCGGCCTGCGCCCTGGGAATCACGAAGGACGAGGTGGAGGA
ATTTTTAAGGCGCTTGGATCGGACTTTGTCGGAGTTCCAAAAAAAAAGGG
GAAAAGTCGGGGCAGAGACCTGGGAGAGACTTGAGGAAAAGAAGGAACAG
CAGGCGCGGAAGGGAGGAGGTGATAACACGAAGGAACAGGGAAGAAACAT
GAAGCATGAAGATAGTTAG

Synonyms

Publications