rna2319, rna2319 (mRNA) Nannochloropsis gaditana

Overview
Namerna2319
Unique Namerna2319
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length936
Alignment locationCM002459.1:105659..106418 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101590g2.4653.mrna
Orig protein idgnl|cribi|Naga_101590g2.4653
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:105659..106418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101590g2gene2214Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2319rna2319-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28363.1cds2311Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2319 ID=rna2319|Name=rna2319|organism=Nannochloropsis gaditana|type=mRNA|length=936bp
TGGCAAGCCAAAGATTAAGGGCAGCGGGACTGGAAAGGGGGGAGGTGGCT
GACGGCAACGACTATATTACAGTGAGAAAGCAGTTGTCTTCATCAAGACA
TGCCATGTCTTGCAGTGACGTGTCAGGAACCGTACATGATCCGACTTTGA
GGCTGTTCCATAGGAATTTCGTCACAAAAGGGAGAAACAACGTCATTTCT
AGGGCTGACCCCAGGATACTCATTGAACGCAAACTCATCCCATGATTACT
TCACATTAAAACCCCACATCAGGCCTTTTCTGGCGACTTCGAGATCTTGG
AGGCCGTAGAGTGCACCAGGGTGTATCTTGCGTCGTGTTTTGGGGTGCCT
GGTCGCTTTTCCGAGTGCAATTGAACTCGTACGTCACCTGCTAGCGCACG
CAGCAACCTCCCCCCAAGCGCTTCCTGCCTCAGTGACCGTACACATGCCT
CCGCCTCACCTTGGAGAAAGATCGACGCACACCCCACGCGCCGGTTCCAA
AACCTTCTCCTGCCGCAGCGCCTTCATCATGGTGGCCGTCTTTGTGGCAG
TCCCTCTGTCCTTATCACGTGCCGTGGCAACAGCAACATGGCAAGCCTCC
CGGCATGCCCCTCGATATCGAGTCAGAGCCACAGCCAGCTTCCTCTCCTC
CTTCCCTCGCCCCTCACACCCTCTCATCTCCAGCATGGGCACTCGTGACG
CGAAGTCCCGGCCTCGGCCGACGTTTTTGGTCCCGTGCGGCGCGCAGAAT
CGAAGGCCCGGCTCGGTCGCCCGCTGGGGGGCCAGCGTCGCCACCTCCCC
AGCCAAGACACTTCCTTCCAACCCCCTCCGCCCTCCCTCTGTACGTGTCC
ATCATCCACTTTCATCCATCGCCCAGGATGCAGGGTGCTGCGCATGCCCC
CGGCTCTGCCTGCGCCATCTTCATGTCCGCTCTTGA
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protein sequence of rna2319

>rna2319-protein ID=rna2319-protein|Name=rna2319|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MAPGPDRTGTVVGKPVDDARSLPEGTSAADGSPSHSWGLDPLFWTYIRAL
ACILSPPHLQYLEGFDFGPFLLGPGERPVCKAMLVGTVVAVRQLKRQGRG
SRGRRKRGSRRKGGS
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mRNA from alignment at CM002459.1:105659..106418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2319 ID=rna2319|Name=rna2319|organism=Nannochloropsis gaditana|type=mRNA|length=760bp|location=Sequence derived from alignment at CM002459.1:105659..106418+ (Nannochloropsis gaditana)
GATGGCACCGGGGCCGGACCGCACAGGAACGGTGGTGGGGAAGCCTGTGG
ACGATGCCAGGTCGCTCCCAGAGGGGACATCGGCCGCCGACGGGAGCCCG
TCGCACTCCTGGGGGCTGGACCCTCTCTTTTGGGTAGGTggcgacaagga
gggtaGGCGTGAAGAAGGCATGCAAAAAAATACATAATACACGGTGACCC
TCCTGTTCCCGCTGCCTCGACGTTTGCCTTTCTcaccccgcccttcctcc
cttccgccctccctcccttcctcccttcctcccttccgcccttcctccct
tcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttc
ctcccttcctcccttcctcccttcctcccttcctcctttcctcccttccg
cctaTCCCACCACGCCCAGACATACATCCGTGCTCTGGCTTGcattcttt
ctcctccgcaCCTGCAGTACCTCGAGGGCTTTGATTTCGGTCCTTTTTTA
TTGGGTCCAGGCGAGCGGCCTGTGTGCAAAGCCATGCTAGTGGGTACAGT
GGTGGCCGTGCGACAGTTGAAGCGGCAAGGTAGGGgctcgagggggagga
gaaaacggggatccaggaggaagggagggagctagggcggggaaaggcgt
CTCACGTTCCTTCCCGACTCATCAcgccaaagcctcctccgcgcccatCA
ATGGGCCGGCGTTTCTGCTACGCGCTCCGATCCTCATTCCTTCTCCATGT
ATTCCAACCC
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Coding sequence (CDS) from alignment at CM002459.1:105659..106418+

>rna2319 ID=rna2319|Name=rna2319|organism=Nannochloropsis gaditana|type=CDS|length=696bp|location=Sequence derived from alignment at CM002459.1:105659..106418+ (Nannochloropsis gaditana)
ATGGCACCGGGGCCGGACCGCACAGGAACGGTGGTGGGGAAGCCTGTGGA
CGATGCCAGGTCGCTCCCAGAGGGGACATCGGCCGCCGACGGGAGCCCGT
CGCACTCCTGGGGGCTGGACCCTCTCTTTTGGACATACATCCGTGCTCTG
GCTTGcattctttctcctccgcaCCTGCAGTACCTCGAGGGCTTTGATTT
CGGTCCTTTTTTATTGGGTCCAGGCGAGCGGCCTGTGTGCAAAGCCATGC
TAGTGGGTACAGTGGTGGCCGTGCGACAGTTGAAGCGGCAAGGTAGGGgc
tcgagggggaggagaaaacggggatccaggaggaagggagggagctagAT
GGCACCGGGGCCGGACCGCACAGGAACGGTGGTGGGGAAGCCTGTGGACG
ATGCCAGGTCGCTCCCAGAGGGGACATCGGCCGCCGACGGGAGCCCGTCG
CACTCCTGGGGGCTGGACCCTCTCTTTTGGACATACATCCGTGCTCTGGC
TTGcattctttctcctccgcaCCTGCAGTACCTCGAGGGCTTTGATTTCG
GTCCTTTTTTATTGGGTCCAGGCGAGCGGCCTGTGTGCAAAGCCATGCTA
GTGGGTACAGTGGTGGCCGTGCGACAGTTGAAGCGGCAAGGTAGGGgctc
gagggggaggagaaaacggggatccaggaggaagggagggagctag
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Synonyms
Publications