EWM28383.1, cds2286 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|585110761|gb|EWM28383.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana] >gi|585110763|gb|EWM28385.1| expulsion defective family member (exp-2) [Nannochloropsis gaditana]) HSP 1 Score: 765.377 bits (1975), Expect = 0.000e+0 Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0 Query: 1 MNLPSPLFRACIPWTLQEDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKLFPYRTQNIT 368 MNLPSPLFRACIPWTLQEDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKLFPYRTQNIT Sbjct: 1 MNLPSPLFRACIPWTLQEDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKLFPYRTQNIT 368
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|585110762|gb|EWM28384.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana]) HSP 1 Score: 747.658 bits (1929), Expect = 0.000e+0 Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0 Query: 1 MNLPSPLFRACIPWTLQEDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEK 358 MNLPSPLFRACIPWTLQEDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEK Sbjct: 1 MNLPSPLFRACIPWTLQEDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEK 358
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|553180960|ref|XP_005853489.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana CCMP526] >gi|422295571|gb|EKU22870.1| expulsion defective family member (exp-2) [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 335.88 bits (860), Expect = 1.273e-107 Identity = 185/247 (74.90%), Postives = 186/247 (75.30%), Query Frame = 0 Query: 101 RPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAV 347 +PHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITR NSGPSLMLLTLFTIVLTFIMGAL VSPFTSVPVSAYWVIITATTVGYG GPGRFVAAASAYCGIVFLSLPIAIV FNIAYDKDADDKAV Sbjct: 296 QPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITR----------------------NSGPSLMLLTLFTIVLTFIMGAL------------------------------VSPFTSVPVSAYWVIITATTVGYG------GPGRFVAAASAYCGIVFLSLPIAIV---FNIAYDKDADDKAV 481
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|585109280|gb|EWM27103.1| (Ion transport [Nannochloropsis gaditana]) HSP 1 Score: 181.415 bits (459), Expect = 2.826e-48 Identity = 106/322 (32.92%), Postives = 170/322 (52.80%), Query Frame = 0 Query: 27 HTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIY-------WDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYF-DGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFR-RALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYD 339 + R ++F+T +H S AW + ++ I+F++ T+P P+ C+ P+C P P C V+C PR + + EL T+++F DYL+R+ V AVP L++ DGR +D S + P +KT +Y + +ID++ I+P+ YV R+ R R L + KL R F + G ++ TL+ S P+L++ T VL + G++ FY+EGGI+ VT P G F R E SPF S+ YW ++ TT+G +L+PT+ GR + AYCG++ L+LPI I+ + F+ Y+ Sbjct: 54 NALRVLIFVTLEHPRSSRLAWYISIFLVACILLNAISFMVGTIPSTLRHPTTCADPVCEPG-PTTFCTEVVCRPRENRIIWHLELWTIVIFTIDYLLRVFCVPAVPVDLVFPRSLEYTIDGRL--KDRS-NYYRMDPCKKTTKYMLSGLNIIDVISIVPF---YVYLLAPYPAIRVFRFLRFLLIFKLGRRFREAGAIISRTLRASLPALLIFVFLTTVLAIVFGSMMFYFEGGIYSVTMEFPAGGFLRPNDRNTALEQSPFQSIFTGVYWYVVNTTTLGNANLYPTTTGGRIASCFIAYCGLLSLALPITIIGQNFSQQYN 368
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|585105815|gb|EWM24405.1| (potassium voltage-gated channel subfamily d member 2 [Nannochloropsis gaditana]) HSP 1 Score: 150.214 bits (378), Expect = 6.895e-39 Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 0 Query: 21 DDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVI--STMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALA 246 DD E R +VF+T H +S A L +M I+C+ FVLSTMPRF P C P+C P P + C IC P L E VT+ +F DY++RL VHAVP+RLI R + +PS L KT + + +IDLL LP+ L + N + RLLR+ RV+R+ +L RY DG +V TL+ S ++ L+ F IVLT A++ Sbjct: 51 DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPG-PDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAIS 277
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|987509|gb|AAB02603.1| (potassium channel homolog [Polyorchis penicillatus]) HSP 1 Score: 125.176 bits (313), Expect = 3.045e-28 Identity = 68/197 (34.52%), Postives = 110/197 (55.84%), Query Frame = 0 Query: 162 RYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEK 358 ++ ++ +ID L ILPY L+ V+ + + + +LR+ RVLRV KLSR+ G +++ NTLK S LM+L F V+ I G+ +Y E +K E + F S+P S +W I+T TTVGYGD+HP + G+ V + + CG++ ++LP+ +VV F Y K+ + + EE K++ + K Sbjct: 250 KFFLNTGNIIDFLSILPYYLSLVLVSSSKGSFSMLRVIRVLRVFKLSRHSRGLQILGNTLKASFNELMMLAFFLFVMILIFGSCVYYAE---YK------------------EPGTKFISIPSSFWWAIVTMTTVGYGDMHPVTFWGQIVGSMAVVCGVLTIALPVPVVVSNFEYFYTKERNRRKTEEARKEQAKSK 425
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|88976032|gb|ABD59027.1| (voltage-gated potassium channel [Physalia physalis]) HSP 1 Score: 121.324 bits (303), Expect = 6.504e-27 Identity = 64/200 (32.00%), Postives = 115/200 (57.50%), Query Frame = 0 Query: 162 RYAVHADQVIDLLVILPYLLNYVISTMNIMHWRL--LRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKL 359 ++ + +IDLL I+PY +++ +S+ + L LR+ RVLRV KLSR+ G +++ +TLK S L++L F +++ + G+ +Y E + E + FTS+P +++W I+T TTVGYGD++PT+ G+ + + CG++ ++LP+ +VV F Y K+ + + EE ++KE E++L Sbjct: 254 KFFTNLSNIIDLLSIVPYYVSFALSSTSKHQGYLAVLRVIRVLRVFKLSRHSRGLQILGDTLKASFHELLMLAFFLLIMILLFGSCVYYAEYQV---------------------EGTKFTSIPAASWWAIVTMTTVGYGDMYPTTLLGKLIGFVAVVCGVLTIALPVPVVVSNFEYFYTKERNRRKTEE-VRKEHEKQL 431
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|1072232005|gb|OEU16737.1| (voltage-gated potassium channel [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 114.005 bits (284), Expect = 1.413e-24 Identity = 85/322 (26.40%), Postives = 147/322 (45.65%), Query Frame = 0 Query: 24 RAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDP--------------GAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLIT-VHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALE-GGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAI 329 R ++R +F+ S+ + +Y ++ S + +L TM F YTP C CR G++ + +C PRP+ YL + LI F ++ +R+++ V A P+ I F + + D L I PY + ++ ++ RLLR+ RV + ++L +Y + N L S P L L+ + I G+L F+ E G +K + R + + EE+SPF S+P + +W I+TATTVGYGD +PTS G+++AA + G++ ++ P+++ Sbjct: 5 RHHRSFRRRLFLFLTEPSSSWGSAIYFFILILAIFASNLIIILQTMAYFQYTPVDCG--FCRGESSHDKIYDDDQDQIYNGSDIIQCVCPPRPYPYLERAMDYILIFFAVEWTLRVLSFVPAHPRTDII-----------------GKCNDWFTFLTSMPTMFDALAIWPYFIE-ILHLPGLISLRLLRLFRVFQFVRLGKYNSMFVSLTNVLYKSLPFLRLMIVVLFFGASIFGSLVFWLEQGTWKYWEPTGTFQYIRMSKDLTNEEISPFNSIPCAYWWFIVTATTVGYGDYYPTSTIGQWIAAFAMIAGVLVIAFPVSV 306
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|802786910|gb|KKA78340.1| (ion channel [Pristionchus pacificus]) HSP 1 Score: 110.538 bits (275), Expect = 2.404e-24 Identity = 68/213 (31.92%), Postives = 113/213 (53.05%), Query Frame = 0 Query: 159 KTFRYAVHADQVIDLLVILPYLLNYVISTMNI-------MHW-----RLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKL 359 + R+ + ++DLL I+P+ L +++ + + W R+LR+ RV+R++KL R+ G + TL+ S L ++T+ ++LT G +F T + LE E+ +PFTS+P + +W I+T TTVGYGD P + G+ +A+A+ CG++ L+LPI I+V F K A D+ EQ K EEE ++ Sbjct: 71 RKLRFMMKPLNLVDLLAIVPFYLELILTLCGVDDKKLRDLRWAFLVVRILRVLRVIRIIKLGRFSSGLQTFGMTLQRSQKQLQMMTI--VLLT-----------GVVFFSTMIY--------FLEKDEDGTPFTSIPAAYWWCIVTMTTVGYGDAVPATTMGKIIASAAIMCGVLVLALPITIIVDNFI----KVAQDEQTAEQQKMEEENRM 258
BLAST of EWM28383.1 vs. NCBI_GenBank
Match: gi|828218762|ref|XP_012561063.1| (PREDICTED: potassium voltage-gated channel subfamily A member 10-like, partial [Hydra vulgaris]) HSP 1 Score: 107.071 bits (266), Expect = 3.217e-24 Identity = 62/185 (33.51%), Postives = 100/185 (54.05%), Query Frame = 0 Query: 163 YAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAV 347 + ++ +ID L ILP+ L+ +IS+ N +LR+ RV RV KL+R+ G +++ NTLK S LM+L F V+ G+L +Y E + + G + FTS+P S +W I+T TVGYGD+ P + G+ + + + G++ ++LP+ I+V F Y KD + K V Sbjct: 2 FFLNGGNIIDFLSILPFYLSLIISS-NRTETSILRVMRVFRVFKLARHSRGLQILGNTLKASFNELMMLVFFLFVMILFFGSLIYYAE-----------------KDVPG----TTFTSIPDSFWWCIVTMATVGYGDMVPITFWGKLIGSVTIIFGLLLVALPVPIIVSNFEFYYKKDQNRKKV 164 The following BLAST results are available for this feature:
BLAST of EWM28383.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|