rna2243, rna2243 (mRNA) Nannochloropsis gaditana

Overview
Namerna2243
Unique Namerna2243
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1362
Alignment locationCM002458.1:1244029..1245475 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100495g7.2393.mrna
Orig protein idgnl|cribi|Naga_100495g7.2393
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1244029..1245475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100495g7gene2145Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2243rna2243-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28441.1cds2235Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2243 ID=rna2243|Name=rna2243|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
ACAGCGTTCTTGTTTTTGGAATTGCCGTCTGGCATGTATATGTCGTGTGG
GAGCCCAATATTATGACACTCAGGAAACGGCAGAGGTATTGACAAATTGA
TGTGGCCTTTCGCCGCAGTGGGGCCATAGTGGGAATTTGCCTGCGCCCTT
GCTATCTATCGGACACTGCGGCCGCCCCCAAAATGCAATGCATGCGCCTA
CAAAAAGATGGACGCGAGAAAGGAGCAAGTTCGGGGTGTGAAGGAGACTA
GATTGAGTGCAGCGTTGGAATTTAGTTCATAGCCTCCTCGGGTGGTAGTG
TGGGAGGTCAAGCAGCAGCTGTCGCGCGCCCCGCCGACAAGGCAATGCAA
CATACCAAACCCGTGGAATGCATGCACCAATCCCCGCACGTCACCCACTC
GCATACAGGAGTGCGCCTGAGGTCTCCTTGGTGCATGTCAAGCCAACACT
GACCCTTATGTTTGTCGTCGGCTTCTTTTTGCGGGGAATGCCTCGTTAAG
GGGGGACATCATCACAATCGTTGTTCCTCGGACCCGCAGCATCTCACGAG
CCTTTTCCCGAGGAAGTATCGTCTATCTGGCACCATCGCTTCCCAAAGTA
TCACGCAGACTCCGATTGAATGACATCTGTGGCAGAGCTTCTCCCCAAAA
CCAAGAAGTTAGCCTTCGAATTGCAAGGCCAAGTCCGCCAGGTGGAGATC
GGGTATGTGTCACCGGACAATGTCTTCATGGGCTTGGGAGAGCTGGAACG
TCAAATCAGCATCCTGCACACGCTTGTGGCCCAGGAGCGGCCGGGGGCGA
GGGAACAATGGCAAAGGCGGATCGGTGAACTGCACAGTGAGGCTGTCTTT
TTGAGGACCGTTCTGAACCGGTTCCTCCAGTCACGCGGGAAGGTCGCCCA
GGAGGCGAAGGAGCGGGAGGAGCTTCTGGCCCGTCGGTACGGGAAGGGGG
GGGACCTGGAGGCTCCTGCTCGGGCCGTAGAGGAGCTTCTCGAGGAAGGC
GCAAGCTACCAGCGGAGTAGCGCCATGATGAACGATATCCTGATGTCGGG
TCAAGCCACGCTTTCCAACCTGTTGGACCAACGAAGCTCGTTGAAAAGCG
CCCGCAAAAAAGTCTTGGACGTGCTGAATTTGTTGGGGGTGAGCCATCGG
ATCACGGGGATGGCCGAGCGACGGGACACGGTAGACAAGCTGATCGTCGC
GGGGGGGATGGCGGTGACCCTGCTCGTGCTCTGGCTGTGCTGGAAAGCCG
TCTCATAGACATGCGAGGAAACGTGGCAAATCCCGGTCGGAGACCATGGT
GTCACGGAGGGCCCTCCCAATAGCCAAGGCGAGAAGTAATTAAGAATGTA
ACTCTAGCGCTT
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protein sequence of rna2243

>rna2243-protein ID=rna2243-protein|Name=rna2243|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MAPLRRKATSICQYLCRFLSVIILGSHTTYTCQTAIPKTRTLFLSPSRAC
VELHHPLPPSSAAISLPYDGRYNKVLSTDNAKVLLFGLTYVNSQDSTALE
PAEGPETGADYEEEALSPEALRIYWEEEKGLSPKRSHYLVVAAKKHPSLR
YPHTVLEPSLAAFGRAFPDVAVPDLMSRFPALLLLSPAQILARLRTLQHC
LPDLPPRLLATRAAPLLLLRPAEVHARLDTWQSLFPGRDTARLCRRSLPL
LLLSPSCAETLVTDAMALLHAHLNLSSTAAVDVLTEAPALLVPREGGGRG
GGRGRGRGGGRNDMKKVELCWDAEHLQNVKNLLEGYVPGASPAKLLLASP
SLLLLPLPTLEGRLRAVEEVGKEGGREGGKEEVREGEGLARLLTLCPRVL
KAEAEAVRRGVRSIRAGLEAGGEGGGEGGGREWNRGRTGS
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mRNA from alignment at CM002458.1:1244029..1245475+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2243 ID=rna2243|Name=rna2243|organism=Nannochloropsis gaditana|type=mRNA|length=1447bp|location=Sequence derived from alignment at CM002458.1:1244029..1245475+ (Nannochloropsis gaditana)
TGGGGGCGGCCGCAGTGTCCGATAGATAGCAAGGGCGCAGGCAAATTCCC
ACTATGGCCCCACTGCGGCGAAAGGCCACATCAATTTGTCAATACCTCTG
CCGTTTCCTGAGTGTCATAATATTGGGCTCCCACACGACATATACATGCC
AGACGGCAATTCCAAAAACAAGAACGCTGTTTTTGTCGCCGTCACGAGCA
TGCGTGGAGCTGCAccatccgcttcctccctcctctgctgcGATCTCTCT
TCCTTACGATGGAAGATATAATAAGGTTTTGTCCACTGACAACGCTAAAG
TGCTCCTTTTCGGCCTGACATACGTCAACTCACAAGACAGTACAGCATTG
GAACCCGCCGAGGGTCCCGAAACAGGAGCGGATTACGAAGAAGAAGCGCT
CAGTCCTGAAGCCTTGAGGATCTactgggaagaggagaaaggtcTTTCCC
CGAAGCGCAGTCACTACCTGGTTGTAGCCGCCAAAAagcacccttccctc
cgctaTCCCCATACGGTCCTAGAGCCGAGCCTTGCTGCCTTCGGCCGGGC
TTTCCCGGACGTGGCGGTGCCTGATTTGATGTCGCGGTTCCcggcccttc
tcctcttgtCTCCTGCCCAAATTCTTGCACGTCTGCGCACCCTCCAACAC
TGCCTCcctgacctcccccctcgcctcctcgccacccgtgccgcccctct
cctcttgctccGCCCCGCCGAGGTGCACGCCCGCCTGGACACTTGGCAat
ccctctttcctggtCGCGACACCGCCCGCCTCTGTCGGCGatcgctcccg
ctcctgctcctttccccctcttgcGCCGAAACGCTGGTCACAGATGCCAT
GgccctcctgcacgcgcATTTAaatctctcctccaccgctgcCGTGGACG
TGTTGACGGAAGCGCCCGCCCTGCTCGTGCcccgggagggcggaggtcga
ggaggaggaaggggcagaggacgagggggaggaaggaacgaCATGAAAAA
AGTTGAACTGTGCTGGGACGCCGAGCACCTGCAGAACGTGAAGAACCTTC
TGGAAGGCTACGTGCCAGGCGCTTCCCCCGCCAAGctgctcctcgcctcc
ccctccctgctccttctccctctgcccACGCTTGAAGGTCGGCTtcgggc
agtggaggaggtaggcaaggagggtgggagggagggcgggaaggaggagg
tgcgagaaggggagggattggCCAGGTTACTGACGCTCTGTCCCCGTGTa
ttgaaggcggaggcggaggcagtGAGGAGAGGTGTCCGGTCGATCAGGGC
AGGGCTtgaggccgggggggagggcgggggggagggaggggggagggagt
ggaacAGGGGGAGAACGGGCAGTTGAATGTCCTGCGGCTCGCTACCAAGT
GTCCGACGCTGTTGTTGAAAGCTGTGGAGGGGTTGGATGTGGAAGCG
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Coding sequence (CDS) from alignment at CM002458.1:1244029..1245475+

>rna2243 ID=rna2243|Name=rna2243|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002458.1:1244029..1245475+ (Nannochloropsis gaditana)
ATGGCCCCACTGCGGCGAAAGGCCACATCAATTTGTCAATACCTCTGCCG
TTTCCTGAGTGTCATAATATTGGGCTCCCACACGACATATACATGCCAGA
CGGCAATTCCAAAAACAAGAACGCTGTTTTTGTCGCCGTCACGAGCATGC
GTGGAGCTGCAccatccgcttcctccctcctctgctgcGATCTCTCTTCC
TTACGATGGAAGATATAATAAGGTTTTGTCCACTGACAACGCTAAAGTGC
TCCTTTTCGGCCTGACATACGTCAACTCACAAGACAGTACAGCATTGGAA
CCCGCCGAGGGTCCCGAAACAGGAGCGGATTACGAAGAAGAAGCGCTCAG
TCCTGAAGCCTTGAGGATCTactgggaagaggagaaaggtcTTTCCCCGA
AGCGCAGTCACTACCTGGTTGTAGCCGCCAAAAagcacccttccctccgc
taTCCCCATACGGTCCTAGAGCCGAGCCTTGCTGCCTTCGGCCGGGCTTT
CCCGGACGTGGCGGTGCCTGATTTGATGTCGCGGTTCCcggcccttctcc
tcttgtCTCCTGCCCAAATTCTTGCACGTCTGCGCACCCTCCAACACTGC
CTCcctgacctcccccctcgcctcctcgccacccgtgccgcccctctcct
cttgctccGCCCCGCCGAGGTGCACGCCCGCCTGGACACTTGGCAatccc
tctttcctggtCGCGACACCGCCCGCCTCTGTCGGCGatcgctcccgctc
ctgctcctttccccctcttgcGCCGAAACGCTGGTCACAGATGCCATGgc
cctcctgcacgcgcATTTAaatctctcctccaccgctgcCGTGGACGTGT
TGACGGAAGCGCCCGCCCTGCTCGTGCcccgggagggcggaggtcgagga
ggaggaaggggcagaggacgagggggaggaaggaacgaCATGAAAAAAGT
TGAACTGTGCTGGGACGCCGAGCACCTGCAGAACGTGAAGAACCTTCTGG
AAGGCTACGTGCCAGGCGCTTCCCCCGCCAAGctgctcctcgcctccccc
tccctgctccttctccctctgcccACGCTTGAAGGTCGGCTtcgggcagt
ggaggaggtaggcaaggagggtgggagggagggcgggaaggaggaggtgc
gagaaggggagggattggCCAGGTTACTGACGCTCTGTCCCCGTGTattg
aaggcggaggcggaggcagtGAGGAGAGGTGTCCGGTCGATCAGGGCAGG
GCTtgaggccgggggggagggcgggggggagggaggggggagggagtgga
acAGGGGGAGAACGGGCAGTTGA
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Synonyms
Publications