rna2236, rna2236 (mRNA) Nannochloropsis gaditana

Overview
Namerna2236
Unique Namerna2236
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length621
Alignment locationCM002458.1:1228535..1229648 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100591g2.6270.mrna
Orig protein idgnl|cribi|Naga_100591g2.6270
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1228535..1229648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100591g2gene2138Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28445.1cds2228Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2236rna2236-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2236 ID=rna2236|Name=rna2236|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
CAGCGGAGTCGACCTCAGAACCCCTTACTAGGAGCTCCTACCATGCGACA
ACATGTCTCCATCCTGGTCATCGCCTATATTTTCCTGGTCTCGATGGGGA
GTCTGGTCCTTGTAAGTGGCAAGGACCGTCGGTCTGACACTCTTTTTGGT
AGGACGCGTCGCGAGCACGGGAAAGATGCAAGCAACCAGGCCCAGGAAGA
AGATCTAGAAAATCCGCCTCCCAAGTACACCTTCGAGCGTCGTCGATTAA
GCGGGGAAGAGGCAGCCAAGGCAGAGGCGACCAGAATTGATCCTACCTAC
GAACCAGAAATGAACCTAATTCAGAGGATCAAGGCCGGTACCTTCGACTT
TTTCACGGATGCACTTCCAGAGATGCTCGAGTCGGTGACGAAGGATGAGG
CGGGGCTGATTTTCGAAAACTTCAAGGTCATGAAGACCACCAAGGCGTGG
AAGGCCTTCCAAGAGAGCGGTGACACCGAGGATGAGGAAGCGGTGGCCAG
CGCCATGATCAAGAGCGTGCAGGAGATGGGTCAGATCATGCTGGGTGCTC
GGTATTTCACCAAGGACGCCGACTCGGTCACGGCGGTAACCGACGAGTTT
CCGTCTTCCCCGAACTACTGA
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protein sequence of rna2236

>rna2236-protein ID=rna2236-protein|Name=rna2236|organism=Nannochloropsis gaditana|type=polypeptide|length=208bp
MPHIFPLLCHRQVIRRSNASTEFQRDRSKHFPHAPAPRISSSFRRTRFPQ
GVPIVLQGMGSPAEKRSGGSTSQDVVLSSSSSSGSPLLQYFSKSASASVL
PPSVPPPPIPPPGLGASASSPPPSTSLPSLLKSKSFGFLSSPFFAAPSAA
GEEKCSIGKEDNVRLAATGGGFSPRQILTPPSPSSFVRQQPLREGKGEQL
MMQMMLDM
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mRNA from alignment at CM002458.1:1228535..1229648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2236 ID=rna2236|Name=rna2236|organism=Nannochloropsis gaditana|type=mRNA|length=1114bp|location=Sequence derived from alignment at CM002458.1:1228535..1229648- (Nannochloropsis gaditana)
ATGCCTCACATTTTCCCCCTCTTGTGCCATCGCCAAGTGATCCGTCGCTC
GAACGCGTCCACGGAATTCCAGCGAGACCGATCCAAGCATTTCCCACATG
CACCCGCACCGCGAATTTCCTCCTCATTTCGACGCACACGATTCCCACAA
GGCGTACCCATTGTCCTACAGGGTATGGGCAGTCCAGCCGAAAAAAGATC
AGGGGGAAGCACGTCACAGGACGTGGTGTTGAGTTCTTCCTCCTCGTCTG
GTTCACCTCTTCTGCAGTACTTTAGTAAGTCTGCTTCGGCATCTGTTCTT
CCTCCCTCTGTTCCACCCCCGCCCATTCCACCCCCCGGCCTTGGTGCCTC
TGCTTCCTCACCTCCACCATCGACTTCGCTGCCTAGTCTGCTAAAATCCA
AGAGTTTCGGATTTCTATCCAGTCCCTTCTTTGCTGCCCCTTCTGCAGCG
GGAGAGGAGAAGTGCAGCATTGGAAAGGAGGACAATGTCCGCTTAGCTGC
GACAGGGGGAGGATTCTCACCTCGGCAAATTTTAACACCACCATCTCCAT
CTTCTTTTGTCCGGCAGCAACCTCTGAGAGAGGGCAAAGGCGAACAGCTT
ATGATGCAGATGATGTTAGATATGTAATGCGTCGAAAACAAGTAGAACGC
GGGCGCCCTCTTGTCCCGCTTGCGTGTGTGCGAAAAATTTGTAAAGCACA
CACAGTAAAGGAGAATCTGGGAGAGAAGAAGCGTGAGTTTGCAATGTTTG
CGCCGCGCGCAATTGCAGCCAAGAGGACGAGGCACTCATTCCTGGCTTTT
AGAAATACTGGGTTGTCTCACAAAGAAAGGCATCACACACGACATCACAG
AGTGATTGTTGTTAAATAAATGAGGCCATTTTTGTTTCTATTCTTGCCCG
ACAATCAGAAAAAGCACAGTCGCGTTGTAAATTTGAGCCACCAGGAGGGC
CCACCTAAATTTCCACACAAGCGGAGGGAGTACATGACTACCTTGCAAAA
TAAGGCAAGTCATTTTGAAAAGTCGTTCAATTGCTTGCATAATGCATAAA
GTTTCTTTGACAACTGTGTGCGCATTGGCCCTTGCATGGAGTGCTTTGAT
AGTCGTTTCTCTGC
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Coding sequence (CDS) from alignment at CM002458.1:1228535..1229648-

>rna2236 ID=rna2236|Name=rna2236|organism=Nannochloropsis gaditana|type=CDS|length=627bp|location=Sequence derived from alignment at CM002458.1:1228535..1229648- (Nannochloropsis gaditana)
ATGCCTCACATTTTCCCCCTCTTGTGCCATCGCCAAGTGATCCGTCGCTC
GAACGCGTCCACGGAATTCCAGCGAGACCGATCCAAGCATTTCCCACATG
CACCCGCACCGCGAATTTCCTCCTCATTTCGACGCACACGATTCCCACAA
GGCGTACCCATTGTCCTACAGGGTATGGGCAGTCCAGCCGAAAAAAGATC
AGGGGGAAGCACGTCACAGGACGTGGTGTTGAGTTCTTCCTCCTCGTCTG
GTTCACCTCTTCTGCAGTACTTTAGTAAGTCTGCTTCGGCATCTGTTCTT
CCTCCCTCTGTTCCACCCCCGCCCATTCCACCCCCCGGCCTTGGTGCCTC
TGCTTCCTCACCTCCACCATCGACTTCGCTGCCTAGTCTGCTAAAATCCA
AGAGTTTCGGATTTCTATCCAGTCCCTTCTTTGCTGCCCCTTCTGCAGCG
GGAGAGGAGAAGTGCAGCATTGGAAAGGAGGACAATGTCCGCTTAGCTGC
GACAGGGGGAGGATTCTCACCTCGGCAAATTTTAACACCACCATCTCCAT
CTTCTTTTGTCCGGCAGCAACCTCTGAGAGAGGGCAAAGGCGAACAGCTT
ATGATGCAGATGATGTTAGATATGTAA
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Synonyms
Publications