EWM28458.1, cds2215 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|585110864|gb|EWM28458.1| (translation elongation factor tu [Nannochloropsis gaditana]) HSP 1 Score: 274.248 bits (700), Expect = 2.690e-93 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA
Sbjct: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|1109667802|emb|SHH30094.1| (translation elongation factor TU, partial [Anaerosphaera aminiphila DSM 21120]) HSP 1 Score: 196.823 bits (499), Expect = 4.441e-62 Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
MFKK LD AGDN+G LLR V+R+E+QRGQVLAAP T+ + +FEAE+YVLT+EEGGRHTPF + YRPQFY+RT DVTG I L EG EM MPGDN T V+LI P ++EGLRFA+REGGRTVA+GVV+K+L
Sbjct: 46 MFKKQLDQAQAGDNIGALLRGVQREEIQRGQVLAAPGTIHPHHKFEAEVYVLTKEEGGRHTPFFNGYRPQFYLRTTDVTGDIQLPEGIEMVMPGDNATFTVTLIAPIAMDEGLRFAIREGGRTVASGVVSKLL 178
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|1180006726|ref|WP_083529080.1| (elongation factor Tu [Anaerosphaera aminiphila]) HSP 1 Score: 196.823 bits (499), Expect = 4.452e-62 Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
MFKK LD AGDN+G LLR V+R+E+QRGQVLAAP T+ + +FEAE+YVLT+EEGGRHTPF + YRPQFY+RT DVTG I L EG EM MPGDN T V+LI P ++EGLRFA+REGGRTVA+GVV+K+L
Sbjct: 42 MFKKQLDQAQAGDNIGALLRGVQREEIQRGQVLAAPGTIHPHHKFEAEVYVLTKEEGGRHTPFFNGYRPQFYLRTTDVTGDIQLPEGIEMVMPGDNATFTVTLIAPIAMDEGLRFAIREGGRTVASGVVSKLL 174
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|770085458|gb|KJK02950.1| (elongation factor Tu, partial [Burkholderiaceae bacterium 26]) HSP 1 Score: 195.667 bits (496), Expect = 8.909e-62 Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
MF+K LD G AGDNVG LLR KR++VQRGQVLA P ++K + EF E+Y+L+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P + EGLRFA+REGGRTV AGVVAK+L
Sbjct: 35 MFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLAKPGSIKPHTEFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIALPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 167
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|733417449|gb|KHL06545.1| (elongation factor Tu, partial [Mumia flava]) HSP 1 Score: 196.052 bits (497), Expect = 1.569e-61 Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
MF+K LD G AGDNVG LLR KR++VQRGQVLA P ++K + EF E+Y+L+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P + EGLRFA+REGGRTV AGVVAK+L
Sbjct: 56 MFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLAKPGSIKPHTEFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIALPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 188
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|1178875006|ref|WP_083254147.1| (elongation factor Tu [Pandoraea sp. ISTKB]) HSP 1 Score: 195.282 bits (495), Expect = 2.215e-61 Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
MF+K LD G AGDNVG LLR KR+EVQRGQVLA P ++K + +F E+Y+L+++EGGRHTPF +NYRPQFY RT DVTGSI+L EGKEM MPGDN ++ V LI P + EGLRFA+REGGRTV AGVVA ++A
Sbjct: 49 MFRKLLDQGQAGDNVGILLRGTKREEVQRGQVLAKPGSIKPHTDFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSISLPEGKEMVMPGDNVSITVKLIAPIAMTEGLRFAIREGGRTVGAGVVATIVA 182
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|594554544|gb|EXU78594.1| (translation elongation factor Tu, partial [Comamonas aquatica DA1877]) HSP 1 Score: 194.126 bits (492), Expect = 3.557e-61 Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
MF+K LD G AGDNVG LLR KR++V+RGQVL P ++K + F AE+YVL+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P + EGLRFA+REGGRTV AGVVAK+LA
Sbjct: 26 MFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKVLA 159
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|491924492|ref|WP_005675179.1| (translation elongation factor Tu, partial [Lautropia mirabilis] >gi|319741174|gb|EFV93606.1| translation elongation factor Tu, partial [Lautropia mirabilis ATCC 51599]) HSP 1 Score: 198.749 bits (504), Expect = 3.755e-61 Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
MF+K LD G AGDNVG LLR KR++V+RGQVLA P T+K + EFEAE+Y+L+++EGGRHTPF NYRPQFY RT DVTGS+TL EG EM MPGDN +KV LI P + +GLRFA+REGGRTV AGVVAK++A
Sbjct: 169 MFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGTIKPHTEFEAEVYILSKDEGGRHTPFFSNYRPQFYFRTTDVTGSVTLPEGTEMVMPGDNVQMKVKLIAPIAMEQGLRFAIREGGRTVGAGVVAKIIA 302
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|759665023|ref|WP_043382615.1| (elongation factor Tu, partial [Comamonas aquatica] >gi|594556252|gb|EXU80278.1| elongation factor Tu [Comamonas aquatica DA1877]) HSP 1 Score: 194.126 bits (492), Expect = 7.300e-61 Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
MF+K LD G AGDNVG LLR KR++V+RGQVL P ++K + F AE+YVL+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P + EGLRFA+REGGRTV AGVVAK+LA
Sbjct: 49 MFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKVLA 182
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|676386051|ref|XP_009036304.1| (hypothetical protein AURANDRAFT_60042 [Aureococcus anophagefferens] >gi|323453323|gb|EGB09195.1| hypothetical protein AURANDRAFT_60042 [Aureococcus anophagefferens]) HSP 1 Score: 199.904 bits (507), Expect = 1.134e-60 Identity = 93/134 (69.40%), Postives = 112/134 (83.58%), Query Frame = 0
Query: 1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
MFKK+LD G AGDNVG LLR V+RDEVQRGQ+LAAP TV K+FEAE+YVLT+EEGGRHTPF NYRPQF+IRTADVTG++ L +G EM MPGDN T+ + LI P + EGLRFA+REGG+TV AGVV+K+++
Sbjct: 252 MFKKSLDRGEAGDNVGALLRGVRRDEVQRGQILAAPGTVPMTKKFEAEVYVLTKEEGGRHTPFFSNYRPQFFIRTADVTGTVDLPDGVEMVMPGDNATLNIELISPLAITEGLRFALREGGKTVGAGVVSKVVS 385 The following BLAST results are available for this feature:
BLAST of EWM28458.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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