EWM28462.1, cds2214 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|585110870|gb|EWM28462.1| (hect e3 ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 450.284 bits (1157), Expect = 3.495e-160 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 Query: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIRAWSSHAVGERWCQVGAWW 218 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIRAWSSHAVGERWCQVGAWW Sbjct: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIRAWSSHAVGERWCQVGAWW 218
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|552839812|ref|XP_005849888.1| (hypothetical protein CHLNCDRAFT_21324 [Chlorella variabilis] >gi|307109548|gb|EFN57786.1| hypothetical protein CHLNCDRAFT_21324 [Chlorella variabilis]) HSP 1 Score: 203.756 bits (517), Expect = 5.180e-60 Identity = 95/172 (55.23%), Postives = 126/172 (73.26%), Query Frame = 0 Query: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVR 172 + VTA N REYV+LY W+LE S+ F AFR GFL+VCGG AL LF P ELE+L+CG PHLDF AL+A A+YE +A Q ++ FW++LHS +K+ FL F +GSDRAP+ GLG + +I + G DSD LP++HTCFN LLLP Y+SK++L AKL A+ N++GFG++ Sbjct: 283 IPVTAANRREYVDLYTAWLLEGSVGRQFGAFRAGFLRVCGGPALTLFTPAELELLVCGLPHLDFEALQAVAKYEGGYSAEHQEVRWFWEVLHSLSLEQKRAFLMFTTGSDRAPVGGLGKLPLLIQRAGPDSDNLPTSHTCFNSLLLPEYASKDRLRAKLLTAVENAQGFGLQ 454
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|813127447|ref|XP_012197348.1| (hypothetical protein SPRG_03381 [Saprolegnia parasitica CBS 223.65] >gi|641538331|gb|KDO32165.1| hypothetical protein SPRG_03381 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 205.297 bits (521), Expect = 1.087e-58 Identity = 95/171 (55.56%), Postives = 125/171 (73.10%), Query Frame = 0 Query: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171 M VT N EYV Y+ +V S+ + AF +GF VCGG AL LF P+ELE+L+CG+P LDF ALE A Y++ +A SQ I+ FW ++H+F EKK LKF +GSDRAPIRGL +M FVIS++G DSDRLP+AHTCFNHLLLP Y+++EK++ +L+ A+ SEGFG+ Sbjct: 521 MAVTTANRHEYVAKYVEYVTTTSVAQQYGAFHRGFHFVCGGHALELFRPEELELLICGSPELDFEALEEVAHYDDGFSAESQCIQYFWSVVHAFSLDEKKALLKFCTGSDRAPIRGLSNMVFVISRNGPDSDRLPTAHTCFNHLLLPEYATREKMKDRLELAITQSEGFGL 691
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|168050969|ref|XP_001777929.1| (predicted protein [Physcomitrella patens] >gi|162670689|gb|EDQ57253.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 194.897 bits (494), Expect = 5.844e-58 Identity = 90/172 (52.33%), Postives = 125/172 (72.67%), Query Frame = 0 Query: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVR 172 + VT +N YV LY+ ++LEDSI+ F+AF +GF +VC G AL+LF +ELE+L+CG PH DF ALE +YE SQ+IK FW+++ S EKK L F +G+DRAP+ GL ++ F+I+++GDD+DRLP+AHTCFN L++P YSSK KLE +LK A+ NS GFG++ Sbjct: 149 ITVTNDNRERYVSLYVKYLLEDSIREQFDAFLEGFYQVCIGPALSLFRHEELELLICGLPHFDFDALERVTKYENGYTKDSQVIKWFWEVVKSMSLDEKKQLLFFTTGNDRAPVGGLATLKFIITRNGDDTDRLPTAHTCFNVLMVPNYSSKSKLENRLKLAIANSTGFGLQ 320
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|1173944861|gb|OQR93549.1| (HECT E3 ubiquitin ligase [Thraustotheca clavata]) HSP 1 Score: 202.601 bits (514), Expect = 1.311e-57 Identity = 95/169 (56.21%), Postives = 124/169 (73.37%), Query Frame = 0 Query: 3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171 VT+ N EYV Y+ +V S+ + AF +GF VCGGDAL LF +ELE+L+CG+P LDF AL+ AA+Y++ S ++ FW ++H+F EKK LKF +GSDRAPIRGL SM FVIS++G DSDRLP+AHTCFNHLLLP YSS+EK++ +LK A+ SEGFG+ Sbjct: 520 VTSANRGEYVAKYVEYVTTTSVAEQYGAFHRGFHFVCGGDALKLFRSEELELLICGSPELDFEALQEAARYDDGFTEDSPCVQFFWNVVHAFSLEEKKQLLKFCTGSDRAPIRGLSSMVFVISRNGSDSDRLPTAHTCFNHLLLPDYSSQEKMQERLKLAISQSEGFGL 688
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|669170859|ref|XP_008620778.1| (hypothetical protein SDRG_16351 [Saprolegnia diclina VS20] >gi|530727561|gb|EQC25803.1| hypothetical protein SDRG_16351 [Saprolegnia diclina VS20]) HSP 1 Score: 202.601 bits (514), Expect = 1.532e-57 Identity = 94/171 (54.97%), Postives = 125/171 (73.10%), Query Frame = 0 Query: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171 M VTA N EYV Y+ +V S+ + AF +GF VCGG AL LF P+ELE+L+CG+P LDF ALE A Y++ +A S I+ FW ++H+F EKK LKF +GSDRAPIRGL +M FVIS++G DSDRLP+AHTCFNHLLLP Y+++EK++ +L+ A+ +EGFG+ Sbjct: 521 MAVTAANRDEYVAKYVEYVTTTSVAQQYGAFHRGFHFVCGGHALELFRPEELELLICGSPELDFEALEEVAHYDDGFSAESPSIQYFWSVVHAFSLDEKKALLKFCTGSDRAPIRGLSNMVFVISRNGPDSDRLPTAHTCFNHLLLPEYATREKMKDRLELAITQAEGFGL 691
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|1173943960|gb|OQR92752.1| (HECT E3 ubiquitin ligase [Achlya hypogyna]) HSP 1 Score: 199.134 bits (505), Expect = 2.621e-56 Identity = 90/169 (53.25%), Postives = 122/169 (72.19%), Query Frame = 0 Query: 3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171 VT N +YV Y+ + + + AF +GF VCGGDAL+LF P+ELE+L+CG+ LDF ALE A Y++ NA S ++NFW ++H F EKK LKF +GSDRAPIRGL +M FVIS++G DSDRLP+AHTCFNHLLLP Y++++K++ +L+ A+ SEGFG+ Sbjct: 520 VTRANRADYVAKYVEYSTTTCVAQQYGAFHRGFHFVCGGDALSLFRPEELELLICGSEELDFEALEEVAHYDDGFNAESSAVRNFWSVVHEFSLAEKKALLKFCTGSDRAPIRGLSNMVFVISRNGPDSDRLPTAHTCFNHLLLPDYTTRDKMKNRLQLAITQSEGFGL 688
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|1026765386|gb|OAE26105.1| (hypothetical protein AXG93_4022s1170 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 196.052 bits (497), Expect = 1.462e-55 Identity = 92/169 (54.44%), Postives = 124/169 (73.37%), Query Frame = 0 Query: 3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171 VT N +EYV+L + + +E SI+ FEAF+ GF K+C G+ L+LF P ELE L+CG+P LDF ALE YE+ S++I +FW+++HS DE KK L F++G DRAPI+GL ++ FVIS++G DS+RLP+AHTCFNHLLLP YSSK KL +L A+ N+EGFG+ Sbjct: 463 VTQGNRKEYVDLCVEYYMELSIQRAFEAFKHGFQKLCKGNVLDLFQPVELEQLICGSPELDFEALERNTLYEDGYRKDSKVISDFWEVVHSLDEENKKRLLFFVTGCDRAPIKGLANLHFVISRNGTDSERLPTAHTCFNHLLLPEYSSKGKLRERLMTAISNAEGFGL 631
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|470527595|ref|XP_004357184.1| (o ubiquitin protein ligase E3A [Acanthamoeba castellanii str. Neff] >gi|440804151|gb|ELR25029.1| o ubiquitin protein ligase E3A [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 196.052 bits (497), Expect = 3.219e-55 Identity = 91/169 (53.85%), Postives = 121/169 (71.60%), Query Frame = 0 Query: 3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171 +T +N +EYV+LY+ W L+DSI FEAF GF VC A ++F +ELE L+CG+P LDF LE QY+ + ++IK+FW I+HS EKK L F +GSDR+PI GLG + FVI++HG+DSDRLP AHTCFNHLLLP Y+S+EKL+ +L A+ N+EGFG+ Sbjct: 526 LTNDNRQEYVDLYVRWYLKDSIAAQFEAFLSGFRLVCESRAFDMFRAEELEQLVCGSPVLDFEELEKVTQYDNGYHQDHRVIKDFWSIVHSMTLEEKKRLLFFSTGSDRSPIGGLGKLAFVITRHGEDSDRLPQAHTCFNHLLLPEYASREKLQERLMTAISNAEGFGM 694
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|302810695|ref|XP_002987038.1| (hypothetical protein SELMODRAFT_125303, partial [Selaginella moellendorffii] >gi|300145203|gb|EFJ11881.1| hypothetical protein SELMODRAFT_125303, partial [Selaginella moellendorffii]) HSP 1 Score: 187.963 bits (476), Expect = 4.445e-55 Identity = 88/172 (51.16%), Postives = 121/172 (70.35%), Query Frame = 0 Query: 1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVR 172 ++VT EN + YV+LY+ ++LE SI F AF++GFL+VCGG AL LF +ELE+L+CG H DF ALE Y+ S +I+ FW ++ EKK L F +G+DRAP+ GLGS+ +I ++GDD++RLP+AHTCFN LLLP YSS+EKL +LK A+ NS GFG++ Sbjct: 173 VQVTGENKQRYVDLYVNYLLETSIATQFSAFKRGFLQVCGGPALRLFQYEELELLICGLRHYDFDALERGTTYKGGYTKDSNVIQWFWNLVKEMSVEEKKQLLFFTTGNDRAPVGGLGSLKLIIQRNGDDTERLPTAHTCFNILLLPEYSSQEKLADRLKLAISNSTGFGLQ 344 The following BLAST results are available for this feature:
BLAST of EWM28462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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