rna2209, rna2209 (mRNA) Nannochloropsis gaditana

Overview
Namerna2209
Unique Namerna2209
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length847
Alignment locationCM002458.1:1165484..1166754 -

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Properties
Property NameValue
Productprotein of unknown function DUF1995
Orig transcript idgnl|cribi|Naga_100190g10.3122.mrna
Orig protein idgnl|cribi|Naga_100190g10.3122
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1165484..1166754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100190g10gene2112Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2209rna2209-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28471.1cds2201Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2209 ID=rna2209|Name=rna2209|organism=Nannochloropsis gaditana|type=mRNA|length=847bp
CGGGATAATATATATTGATACAGCGGGCCAAAACTAAAGGATTTGATGGG
AAAATGAACGTCTGGATGTCAAAATAGGGGCCATGCCGAATTTTTTACTC
GGTGCGGCAATTGATTTGAAGCGGCTCGGAAGCTTGCTGCTGCTTCATCG
CCGCCGACAGGAAGCATTACTCACATGTAGCGGCACGTCCACGCTCTCAC
CTTCTACAACTACCACGACAGGGACCGAGACACCAGTTCATGGTACGCTT
GCGGGCTACACGGCTTTTACATGCCCATTCTCTCGGCAATCACCACGATT
CCCACACCGCGTCACCTTTAGCCTCCCGGCTCCAGCCTCCATGTCTTCCA
CTGCTCCTATTAATGCTCCTTCGCGTGCACGTCATGCTGACCTTCCTTCT
CGTCGCAATGGACGCTGCATCCTCGAACATGTCTTCTAAAGCTTACACAC
GCCACGGCATTGAGGCGCTTAAAGGTCTTCTCTTTTGGGCGGTCAGCATC
TTTATGCCCTCTCGTGACCCCGCCCTCTTCGTTCGTCTCGCCGTAGTCTG
GATGGTCCTCACTTTTGGTTACAGTCTACTACTCCCTGTTGTAACCTTAC
TTCGCGCGGAGCATCGGCGAAGTTCAAACAGGCGTTCATCAATGTGGGAG
GAGGAGTGGCTGCGATGTCTAATCGTTTTGAATGCACTTGCGGGCATGAT
GATCGTTGTAAAAATGTGTCTATACCAAGGGGCTTTTCGCAGGTTACTAC
TTAAAGACACACACAAAAGGAAAAGACGTATCAGAGAAAGACAAATGAAA
GAACAATGACGTAAAACGAGGATAGGGAAGCCACAAAATGCCTTGGT
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protein sequence of rna2209

>rna2209-protein ID=rna2209-protein|Name=rna2209|organism=Nannochloropsis gaditana|type=polypeptide|length=375bp
MRHTWSSIACLFSLLISQSTIGFLLPYPSGSFPMARPHSTLSSQVALFAT
TVPRAVGLEAIPEADLKAADKTAPPSTFFECTLQAYNAAAAAIKDGYKLL
EVEFPPLPAAEMASQASSANSIGSANINLANEMAQYFVREGKQVVILVPD
KDELDLIEEGLGTLSPSPNVTIRAVRARNSESADTMGELILGIFSRAAKG
KVLPWYNADIYISVISSGQELPDLEALHQADPTKPLIFFNLNLETHRGDL
GLPAFPSKDLHYRFLSNIKPVYLLRTRQYAQTLSRPPFILNYQGALFRTY
PGGYQCMLDTGNGRYRRVETSRERPALSGFKDIITQALDVEDNDTLASLR
RGAFSKTWWEKEEGWAKESSDNWRT
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mRNA from alignment at CM002458.1:1165484..1166754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2209 ID=rna2209|Name=rna2209|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp|location=Sequence derived from alignment at CM002458.1:1165484..1166754- (Nannochloropsis gaditana)
ATGAGGCACACATGGAGCAGCATCGCCTGCCTTTTTTCGCTGCTTATCAG
CCAGAGCACAATTGGGTTTCTTCTGCCTTATCCTTCCGGTTCTTTTCCCA
TGGCCCGCCCTCACTCCACTCTTTCCTCTCAAGTGGCACTTTTCGCAACA
ACTGTGCCGCGAGCCGTCGGATTGGAAGCAATTCCAGAAGCTGACTTGAA
AGCAGCGGACAAAACAGCCCCCCCATCCACTTTTTTTGAGTGTACGCTGC
AAGCATACAACGCAGCAGCAGCAGCTATCAAGGACGGTTACAAGCTGCTA
GAAGTAGAATTCCCTCCCCTACCTGCCGCTGAGATGGCTTCCCAGGTAAC
GTACATCATACGTATTTTTTTGTTACCCTCTTGGGACCTCAAGGTGGTCA
CTTCCAGCTCTGTAGGAGATCCTTGCCGATCGTGCATTTCCTGCAACGTC
ATTGCCTTCTCCTCAACCCCTCTCCTCGCTGCCCACAGGCCTCCAGCGCC
AACAGCATTGGCTCCGCCAACATCAACCTGGCGAACGAGATGGCCCAGTA
CTTCGTGCGTGAAGGCAAGCAAGTTGTGATTCTTGTGCCCGACAAGGACG
AATTGGATTTGATCGAAGAGGGGCTCGGCACCCTCTCGCCTTCACCGAAC
GTGACCATCCGCGCCGTCCGCGCCCGAAATTCGGAGTCCGCCGACACCAT
GGGGGAACTGATCCTGGGGATTTTTTCCCGGGCAGCCAAAGGCAAGGTCT
TGCCCTGGTACAACGCGGACATTTACATCAGCGTCATCTCCTCCGGCCAG
GAGCTTCCCGATCTGGAGGCTTTGCACCAAGCCGATCCCACCAAGCCCCT
CATTTTCTTCAATTTGAACCTGGAAACCCACCGGGGAGACCTGGGCCTGC
CCGCCTTTCCCTCCAAGGACCTGCATTATCGCTTTCTGTCCAATATCAAA
CCCGTCTATTTGCTTCGCACACGTCAGTACGCCCAGACCCTGTCCCGCCC
TCCCTTCATCCTGAACTACCAGGGTGCCCTTTTTCGAACATACCCTGGGG
GGTACCAATGCATGCTCGACACGGGAAACGGTCGGTATCGCCGGGTGGAA
ACCTCCCGTGAACGTCCCGCATTGAGCGGTTTCAAGGACATCATAACGCA
GGCGTTGGATGTTGAGGATAATGACACACTCGCCAGTTTGAGGAGGGGGG
CCTTTAGCAAGACGTGGTGGGAGAAGGAAGAGGGATGGGCGAAGGAATCG
TCGGACAACTGGCGTACGTGA
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Coding sequence (CDS) from alignment at CM002458.1:1165484..1166754-

>rna2209 ID=rna2209|Name=rna2209|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at CM002458.1:1165484..1166754- (Nannochloropsis gaditana)
GCCTCCAGCGCCAACAGCATTGGCTCCGCCAACATCAACCTGGCGAACGA
GATGGCCCAGTACTTCGTGCGTGAAGGCAAGCAAGTTGTGATTCTTGTGC
CCGACAAGGACGAATTGGATTTGATCGAAGAGGGGCTCGGCACCCTCTCG
CCTTCACCGAACGTGACCATCCGCGCCGTCCGCGCCCGAAATTCGGAGTC
CGCCGACACCATGGGGGAACTGATCCTGGGGATTTTTTCCCGGGCAGCCA
AAGGCAAGGTCTTGCCCTGGTACAACGCGGACATTTACATCAGCGTCATC
TCCTCCGGCCAGGAGCTTCCCGATCTGGAGGCTTTGCACCAAGCCGATCC
CACCAAGCCCCTCATTTTCTTCAATTTGAACCTGGAAACCCACCGGGGAG
ACCTGGGCCTGCCCGCCTTTCCCTCCAAGGACCTGCATTATCGCTTTCTG
TCCAATATCAAACCCGTCTATTTGCTTCGCACACGTCAGTACGCCCAGAC
CCTGTCCCGCCCTCCCTTCATCCTGAACTACCAGGGTGCCCTTTTTCGAA
CATACCCTGGGGGGTACCAATGCATGCTCGACACGGGAAACGGTCGGTAT
CGCCGGGTGGAAACCTCCCGTGAACGTCCCGCATTGAGCGGTTTCAAGGA
CATCATAACGCAGGCGTTGGATGTTGAGGATAATGACACACTCGCCAGTT
TGAGGAGGGGGGCCTTTAGCAAGACGTGGTGGGAGAAGGAAGAGGGATGG
GCGAAGGAATCGTCGGACAACTGGCGTACGTGAATGAGGCACACATGGAG
CAGCATCGCCTGCCTTTTTTCGCTGCTTATCAGCCAGAGCACAATTGGGT
TTCTTCTGCCTTATCCTTCCGGTTCTTTTCCCATGGCCCGCCCTCACTCC
ACTCTTTCCTCTCAAGTGGCACTTTTCGCAACAACTGTGCCGCGAGCCGT
CGGATTGGAAGCAATTCCAGAAGCTGACTTGAAAGCAGCGGACAAAACAG
CCCCCCCATCCACTTTTTTTGAGTGTACGCTGCAAGCATACAACGCAGCA
GCAGCAGCTATCAAGGACGGTTACAAGCTGCTAGAAGTAGAATTCCCTCC
CCTACCTGCCGCTGAGATGGCTTCCCAGGCCTCCAGCGCCAACAGCATTG
GCTCCGCCAACATCAACCTGGCGAACGAGATGGCCCAGTACTTCGTGCGT
GAAGGCAAGCAAGTTGTGATTCTTGTGCCCGACAAGGACGAATTGGATTT
GATCGAAGAGGGGCTCGGCACCCTCTCGCCTTCACCGAACGTGACCATCC
GCGCCGTCCGCGCCCGAAATTCGGAGTCCGCCGACACCATGGGGGAACTG
ATCCTGGGGATTTTTTCCCGGGCAGCCAAAGGCAAGGTCTTGCCCTGGTA
CAACGCGGACATTTACATCAGCGTCATCTCCTCCGGCCAGGAGCTTCCCG
ATCTGGAGGCTTTGCACCAAGCCGATCCCACCAAGCCCCTCATTTTCTTC
AATTTGAACCTGGAAACCCACCGGGGAGACCTGGGCCTGCCCGCCTTTCC
CTCCAAGGACCTGCATTATCGCTTTCTGTCCAATATCAAACCCGTCTATT
TGCTTCGCACACGTCAGTACGCCCAGACCCTGTCCCGCCCTCCCTTCATC
CTGAACTACCAGGGTGCCCTTTTTCGAACATACCCTGGGGGGTACCAATG
CATGCTCGACACGGGAAACGGTCGGTATCGCCGGGTGGAAACCTCCCGTG
AACGTCCCGCATTGAGCGGTTTCAAGGACATCATAACGCAGGCGTTGGAT
GTTGAGGATAATGACACACTCGCCAGTTTGAGGAGGGGGGCCTTTAGCAA
GACGTGGTGGGAGAAGGAAGAGGGATGGGCGAAGGAATCGTCGGACAACT
GGCGTACGTGAATGAGGCACACATGGAGCAGCATCGCCTGCCTTTTTTCG
CTGCTTATCAGCCAGAGCACAATTGGGTTTCTTCTGCCTTATCCTTCCGG
TTCTTTTCCCATGGCCCGCCCTCACTCCACTCTTTCCTCTCAAGTGGCAC
TTTTCGCAACAACTGTGCCGCGAGCCGTCGGATTGGAAGCAATTCCAGAA
GCTGACTTGAAAGCAGCGGACAAAACAGCCCCCCCATCCACTTTTTTTGA
GTGTACGCTGCAAGCATACAACGCAGCAGCAGCAGCTATCAAGGACGGTT
ACAAGCTGCTAGAAGTAGAATTCCCTCCCCTACCTGCCGCTGAGATGGCT
TCCCAG
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Synonyms
Publications