rna2205, rna2205 (mRNA) Nannochloropsis gaditana

Overview
Namerna2205
Unique Namerna2205
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length276
Alignment locationCM002458.1:1159795..1160806 +

Link to JBrowse

Properties
Property NameValue
Productrad51
Orig transcript idgnl|cribi|Naga_101096g3.4073.mrna
Orig protein idgnl|cribi|Naga_101096g3.4073
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1159795..1160806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101096g3gene2108Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2205rna2205-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28476.1cds2197Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2205 ID=rna2205|Name=rna2205|organism=Nannochloropsis gaditana|type=mRNA|length=276bp
ATGCAGGAGCGAACATCGAAAGGCTCTTCGCCCAACAGGGCTGCCACGGC
GGCGCCCTATAGAACCCGACGTTGTGGACCAGACGGGCCCGTCTCTGCGG
AGAAACGAGCGGATCGGATCGAGGCCATGGACAGGGAGGAAGGGCGCATG
GAGCGTCGGGAGGGGAGGAGGGAAACGGCAGCTGCAGTTGGGCGAAAGTT
CGAGAGAAATGGATGCGTGACTGCTGCGAACAGGTGCTTGTGTGCCGGAA
TGCCCGCATCTAAACACTGCACATAG
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protein sequence of rna2205

>rna2205-protein ID=rna2205-protein|Name=rna2205|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MDRVRDVLNRGCAAGRPSSSSTTTTTTTTTSSPLPLPTSAFALYQSTRAP
GMSVGSKIITFCRAIDTVLGGGLARGQLSEVVGVPGAGKTQLAMQVAIDV
QIPRSFRGVGGKAVYIGEGGGPGEGGGG
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mRNA from alignment at CM002458.1:1159795..1160806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2205 ID=rna2205|Name=rna2205|organism=Nannochloropsis gaditana|type=mRNA|length=1012bp|location=Sequence derived from alignment at CM002458.1:1159795..1160806+ (Nannochloropsis gaditana)
tctgattaccctcccccctcgatgGTTTACGATCCAACTTACCCGGCTTC
AACGCACCGGAACGCCACATTCACGTTTCAATTCCCCGACAAAGCAACAA
ACTAGGGGCATGCCTTTGGGAAAGCGTCGCCCACTTTTTACCTACGACCT
GCCTTGGCCTGAAATGCAAGGTAGGGAGGTAAACTCTCCACCAGAAGGCC
AACTcactctttctttcttttttcacgcgaacccctccttgtccttcatG
GCCTGCCAGGCGTCTTGCGTCGGAAAGGGTACCGCAAGGCAGGAGAACTT
cgggaggccttggaacCTGGAAatgcttcctcttgcccaCCTTTGACGGC
AGTGGACCTCGCCACCCCAGGTACGCGACACCTTTGGTTTTGAACATCCA
AGAATCCACACCCTGTtagcttctccctcccggctccTACTTAGCTTGTT
GGCTTGTGCTCTCTCGCGTTGTCTGCCGCGCCTCTTTGCTTTTACCGGTT
ATCTGCCCCGGTCTGAGCCTCGCTTGGCCTATCCCTCCCCTGACGTTTGA
CTTCCTTGACGCCTGTGTCGCTTCATTTCTGGTCTCTGCGTTTCCATCGC
AGACTTTACACCCACATCCGCGGACATGGACCGGGTCCGGGACGTTCTCA
ACAGAGGTTGCGCTGCTggcaggccctcctcctcctccaccaccaccacc
accaccaccaccacctcctctcctcttccacttcccacCTCCGCTTTCGC
CCTCTACCAAAGCACGCGGGCCCCCGGCATGAGCGTCGGCTCCAAAATCA
TCACCTTCTGTCGGGCGATCGACACCGTGCTCGGGGGCGGCCTGGCTCGA
GGACAGCTCtccgaggtggtgggggtgccCGGCGCGGGCAAGACCCAATT
AGCCATGCAAGTAGCCATCGACGTACAGATTCCCCGCTCTTTCCGCGGGG
TTGGGGGCAAAGCGGTGTACattggtgagggaggggggccgggggagggc
ggcggaggttga
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Coding sequence (CDS) from alignment at CM002458.1:1159795..1160806+

>rna2205 ID=rna2205|Name=rna2205|organism=Nannochloropsis gaditana|type=CDS|length=387bp|location=Sequence derived from alignment at CM002458.1:1159795..1160806+ (Nannochloropsis gaditana)
ATGGACCGGGTCCGGGACGTTCTCAACAGAGGTTGCGCTGCTggcaggcc
ctcctcctcctccaccaccaccaccaccaccaccaccacctcctctcctc
ttccacttcccacCTCCGCTTTCGCCCTCTACCAAAGCACGCGGGCCCCC
GGCATGAGCGTCGGCTCCAAAATCATCACCTTCTGTCGGGCGATCGACAC
CGTGCTCGGGGGCGGCCTGGCTCGAGGACAGCTCtccgaggtggtggggg
tgccCGGCGCGGGCAAGACCCAATTAGCCATGCAAGTAGCCATCGACGTA
CAGATTCCCCGCTCTTTCCGCGGGGTTGGGGGCAAAGCGGTGTACattgg
tgagggaggggggccgggggagggcggcggaggttga
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Synonyms
Publications