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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100592g2.8445.mrna |
| Orig protein id | gnl|cribi|Naga_100592g2.8445 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1148008..1149794 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2200 ID=rna2200|Name=rna2200|organism=Nannochloropsis gaditana|type=mRNA|length=2386bp
CTCCCTCCCTCCCTGCCTCCCTCCCTCTCTCCCTGGCCCAGGTACATCTG
GAACAAGCTCCAGCCCGAAGACGACGAAAGGGGCGCGATGGTCTCCATCT
TAGACGTGGCTCATGTCGGCATCATGGACCTCCGGGGGGACGCCCTCGAG
TTCCTGAAGGCCGCCAGCCGCGTCGTCCAACAGCATTACGTGGAACGCTC
CTACAAAATGTTCATTCTCAACGCCCCCGCTTGGTTCAGCGTCCTCTGGA
AGGTCATCGCGCCGCTCTTGCATGAGAATACCCGGAGGAAGATCAACATC
TTGGGGAAGGACCACGCACCGGTTTTGGAGGTGATCGCTCCGCACCATCT
ACCTGTGGCCTACGGGGGAAACGATCCTCTGGCTCTGGGCGAGGCCCCGG
AGGAAGTGGATTTTCGTGCCTATGTGCAAAGGGTAAACAGCGGGTTGGAG
GGGAGGGCGGAGGCGGAGGAAGTGGGGGTAGGAGGGGAGAAAGCAGGGTC
ATTGCCAACTGGGTCAAGCGGAACCGGGAACAGGGAAAGAAAGGTAGGAG
GGCGCCGTGCAGAAGTAGACGACGGCGGAGAACCGGAAAGGGGGGGCGAC
GAGCTTGGTCCTGGGGTGTGGAGAGAGGGCTTGCTGGGCGTGGGAGAGCG
GGCGATGGCCAGGGTTGCAGGCGGACTCCAGGCCTTGCGCCCGGCGTTTT
TAACCCCTCTAAGTACCGCACAACGGGCAAATTTGGGGCGGGAGAATCGC
TTTGTCTACGACGAGCACAGGCGGCAGTGGGTTTTGATTGAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGAGGTGGGAGAGAGAGCATAGGCCCCACGGGA
GGGGAAGAGGGGCGGAGGACATGGAGGAAGAAAGGCTGGTACGCGCAATC
CAAGCGGCGCATGAGATGGGAGGGAGGAGCAGCAGTATAAGCGGACGACT
TGCTGCGGTCCTGAGGGGGGAGGAGGGAGGGAGGAAGGGCGAGGAAGCAG
AAGCGACAGCAGCAGCGGCAGCGCAAGCCCGAACGGTGGAGGACCTCGAG
GGCGAGAGGCAGGGCGGGGAAAGCGAAGGAGGGAGGGAGGCGGGGAGGAA
AGAACGAGGACGCGTGGAGAGCCCAGGAGAGGAAAAAAATCGCACATGGC
CGGGCTCAGTTTTCCTCGTCCTGTTGGTGGCTTGGAGGGCGATGGCCCTC
TCCCTCCTCTGGGTCGTCCCCCTCTGGTTGCTCGACACCTGGGACACGGC
GGCCCATGAGGTTGCCTTGCTCTTCTTTCTGGGAGCGATGGTCGCGGTCG
GCCTGTGGGCGGTGCACGCGACCTGCCCGCTTGTCTCGGTCTACGCCGCT
TGCATCGCCACGCTCGTCGGTTTGAGTCTGGCCTCTCTCCTTCTGGGACC
CCTGGGGGGGAGCAGCGACGGCAGTGGCCGGTGGGTGGGCTTGTCGGGGG
AGGGACGAGAAACAGCAGGGGAGGCGTTGAGTGTGATCATGGCTGCACTT
TCCCTTTTGACCACGGCGGGTTCCTTCTCTTGGGCCGTGCACGTCTCTCG
CGCGCTCTTTGACAAGGAAGCCTCCGAGGCCCGTCGTGATTTAATCCCTT
CCCTGCTGCTGGCCGACGCCGTGGGCGTCATCCTCGGTCCCGTCATCTTC
TCCACCGCGCGTGCGTCCGAACAGGAGACAAGCCACCCGCTTGGTGGGAG
GGCCATGTGGTTCAGCATTGTGGGTTTCGCGGGACTGGCCAGTGTGGGCA
TGATCGTCTGGCCAGCGCGCCCTCTCCTGGCGCCACTGACCTCCACGGGA
GGGAGGTAGCGGTAGCGGGGAGAGGGAAGGAAGGTGGGATATCGAGTACG
AGGCAGACCCCGAGGGAGCGACGTGCAAGTTTATCCCGAAATGGACAGCG
CTTGCGTGGGCATGATAACACCCACTAGAGCTTTGTGTCCGGGTCAGGCG
ACCGGTGGGGAGGAGGAGGCTTTGATCAGAGAAAGCGCCGGGCTTGGTGC
TGAAGTTTGGGTGGATGTGTGACGGTGTAACGTCAGCTTGAACGAGATGG
GTTCTGAGGCGGATGGGTGGGAGAGGCCTTTAGAGCTGCCTTTTAACAGG
GGAAAAGGAGAAAATTTTGTGCAGGTGTAATTAGATGGCAAGACTGGATG
GGGCTGATTCCAGAACACGTGCCCGCCCCCTCTTTGTCACAAGAGGGAAA
AGGAACAGAGCCTTGCAGTGGTTGTAAGTCGAGTGAAAGAAAATTCTAGG
AAACGAGTACAGTTCGAGGCAAGTTCCCGCGGCGGGTCAAAGCCTTTAAC
ATAAAACAACGAGCACAAAGGATGGGGCCACGCATGAAAATCGAATGGCC
GAGGCGGGGATCGCCCAAACGCCCATCCCACTCCGG back to topprotein sequence of rna2200 >rna2200-protein ID=rna2200-protein|Name=rna2200|organism=Nannochloropsis gaditana|type=polypeptide|length=566bp
MPEVLAQAFHSGSAHDTPSDASLGAQASDPSASAPMADGAYAARLLALVD
AVHGNERDRATASKDSPVIYTIIGHDAIVQCCPRVVASFIGPFARLENSE
VESSSLLSGREEATWVVEGSVVSRSLLQEGVAVRGHALVRDSLLMEHSSV
DTGGKCSHVVLGPDSGVATGECHHSLVGPCVGFHHQSLLIAALWPRGRGN
VAYGAQIGSNHTGRAADQECLVGEGIFFGLGVLVKLPVNLSHSPYSLVAA
GTSLDQQRLHFPFSLIAASRDGAFLRQCLEDRMGDMETRADAPPILPNIL
RPAWVLRASPYTVFRNESKYMHRSKSRRHKAMVTEPLFRPEIIDMMVEAR
ARLQQALGSRGGWDEKSTGKPFFSKKDLDGSGSNVVTWRGANEGVDTYTV
WIKRYALRGLYDRLKYLEKEEMGINEGGVEEARKFNGNSFWEHQKPILLS
MYSGEARITSPHAPSPRSEAAEKKSDVDICAPDENVKISVLLSDLLDVEE
RIVRGVVRSKERDEIRGAEILDDYSATRPPLEDDKIIKGAKAGLVEIREF
VDLHKGTYEALSLLDL back to topmRNA from alignment at CM002458.1:1148008..1149794+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2200 ID=rna2200|Name=rna2200|organism=Nannochloropsis gaditana|type=mRNA|length=1787bp|location=Sequence derived from alignment at CM002458.1:1148008..1149794+ (Nannochloropsis gaditana)
ATGCCTGAGGTCTTAGCCCAAGCTTTCCACTCCGGCTCTGCCCACGACAC
ACCATCTGATGCTTCCCTTGGTGCCCAGGCATCGGACCCATCGGCTTCCG
CGCCAATGGCCGATGGGGCCTACGCGGCCCGTCTTCTCGCACTGGTGGAC
GCCGTGCACGGCAACGAGAGAGACCGTGCGACCGCCAGCAAGGATTCACC
CGTCATATACACAATCATCGGCCACGATGCAATCGTCCAATGCTGTCCTC
GCGTCGTTGCTTCCTTCATCGGCCCGTTTGCCCGGTTGGAAAATTCGGAA
GTGGAGAGTAGCAGCCTTCTttccgggcgggaggaggccaccTGGGTAGT
GGAGGGTTCCGTAgtctctcgctccctcttaCAGGAGGGGGTGGCTGTCC
GTGGACATGCCCTGGTTCGGGACAGCCTTTTGATGGAGCACAGCAGCGTG
GATACGGGGGGGAAATGCAGCCACGTGGTGCTGGGCCCGGACAGTGGGGT
GGCGACGGGCGAATGCCACCACAGCCTTGTGGGCCCCTGTGTAGGCTTCC
ACCATCAATCCTTGCTTATCGCCGCCCTCTGGCccagaggacgggggaac
GTGGCCTACGGTGCCCAGATTGGCAGCAACCATACCGGTCGGGCCGCAGA
CCAGGAGTGTCTGGTGGGAGAAGGGATCTTTTTTGGCCTGGGAGTCTTGG
TCAAACTGCCCGTCAAcctctcccattccccctaTAGCTTGGTGGCAGCA
GGAACCAGCTTGGATCAGCAGCGCCTgcatttccctttttctctcaTCGC
CGCCTCGCGGGACGGTGCCTTCCTCCGACAATGTCTGGAAGATAGGATGG
GCGACATGGAGACCAGGGCGgatgccccccccatcctcccgaACATTCTG
CGACCCGCCTGGGTGTTGCGAGCGAGTCCTTACACGGTATTTAGAAATGA
GTCGAAATACATGCACAGAAGTAAGTCGCGGAGGCACAAAGCGATGGTGA
CAGAGCCCCTTTTCCGACCGGAAATCATCGAcatgatggtggaggcgcgg
gcAAGATTGCAGCAAGCCCTGGGTTCTCGCGGTGGATGGGATGAAAAATC
AACGGGGAAACCATTTTTTAGTAAAAAAGACCTAGATGGTTCGGGATCGA
ATGTGGTGACCTGGCGAGGGGCGAACGAAGGTGTCGACACGTACACAGTG
TGGATCAAACGGTATGCCCTCCGTGGATTGTACGACCGGCTCAAATActt
ggaaaaggaagaaatgggaatcaatgagggaggagtagAGGAGGCAAGAA
AATTTAATGGAAACAGCTTTTGGGAGCATCAGAAGCCCATCCTTCTAAGT
ATGTACAGCGGAGAAGCCAGGATCACCTCCCCTCATGCTCCTAGTCCGCG
CTCTGAGGCAGCCGAGAAAAAATCAGATGTGGACATTTGTGCGCCAGATG
AAAATGTGAAAATTTCTGTGCTTCTCAGTGATCTTTTGGACGTTGAAGAA
CGCATCGTTAGGGGGGTGGTGAGGAGTAAGGAAAGGGATGAAATAAGAGG
AGCGGAAATATTAGATGACTACTCAGCCACACGGCCCCCTCTTGAAGACG
ATAAGATCATCAAGGGGGCTAAAGCAGGCTTGGTAGAAATTCGGGAGTTT
GTAGACCTTCATAAGGGAACGTAtgaggccctctcccttttagATTTGTG
AGCAGTTTTTTCGGTGTTCGATAAACGAAAGAGCATGGCGTGCCCCCACA
GAAGGAAAATAAAGTACACAGTCCCTATGTTGAGATT back to topCoding sequence (CDS) from alignment at CM002458.1:1148008..1149794+ >rna2200 ID=rna2200|Name=rna2200|organism=Nannochloropsis gaditana|type=CDS|length=1701bp|location=Sequence derived from alignment at CM002458.1:1148008..1149794+ (Nannochloropsis gaditana)
ATGCCTGAGGTCTTAGCCCAAGCTTTCCACTCCGGCTCTGCCCACGACAC
ACCATCTGATGCTTCCCTTGGTGCCCAGGCATCGGACCCATCGGCTTCCG
CGCCAATGGCCGATGGGGCCTACGCGGCCCGTCTTCTCGCACTGGTGGAC
GCCGTGCACGGCAACGAGAGAGACCGTGCGACCGCCAGCAAGGATTCACC
CGTCATATACACAATCATCGGCCACGATGCAATCGTCCAATGCTGTCCTC
GCGTCGTTGCTTCCTTCATCGGCCCGTTTGCCCGGTTGGAAAATTCGGAA
GTGGAGAGTAGCAGCCTTCTttccgggcgggaggaggccaccTGGGTAGT
GGAGGGTTCCGTAgtctctcgctccctcttaCAGGAGGGGGTGGCTGTCC
GTGGACATGCCCTGGTTCGGGACAGCCTTTTGATGGAGCACAGCAGCGTG
GATACGGGGGGGAAATGCAGCCACGTGGTGCTGGGCCCGGACAGTGGGGT
GGCGACGGGCGAATGCCACCACAGCCTTGTGGGCCCCTGTGTAGGCTTCC
ACCATCAATCCTTGCTTATCGCCGCCCTCTGGCccagaggacgggggaac
GTGGCCTACGGTGCCCAGATTGGCAGCAACCATACCGGTCGGGCCGCAGA
CCAGGAGTGTCTGGTGGGAGAAGGGATCTTTTTTGGCCTGGGAGTCTTGG
TCAAACTGCCCGTCAAcctctcccattccccctaTAGCTTGGTGGCAGCA
GGAACCAGCTTGGATCAGCAGCGCCTgcatttccctttttctctcaTCGC
CGCCTCGCGGGACGGTGCCTTCCTCCGACAATGTCTGGAAGATAGGATGG
GCGACATGGAGACCAGGGCGgatgccccccccatcctcccgaACATTCTG
CGACCCGCCTGGGTGTTGCGAGCGAGTCCTTACACGGTATTTAGAAATGA
GTCGAAATACATGCACAGAAGTAAGTCGCGGAGGCACAAAGCGATGGTGA
CAGAGCCCCTTTTCCGACCGGAAATCATCGAcatgatggtggaggcgcgg
gcAAGATTGCAGCAAGCCCTGGGTTCTCGCGGTGGATGGGATGAAAAATC
AACGGGGAAACCATTTTTTAGTAAAAAAGACCTAGATGGTTCGGGATCGA
ATGTGGTGACCTGGCGAGGGGCGAACGAAGGTGTCGACACGTACACAGTG
TGGATCAAACGGTATGCCCTCCGTGGATTGTACGACCGGCTCAAATActt
ggaaaaggaagaaatgggaatcaatgagggaggagtagAGGAGGCAAGAA
AATTTAATGGAAACAGCTTTTGGGAGCATCAGAAGCCCATCCTTCTAAGT
ATGTACAGCGGAGAAGCCAGGATCACCTCCCCTCATGCTCCTAGTCCGCG
CTCTGAGGCAGCCGAGAAAAAATCAGATGTGGACATTTGTGCGCCAGATG
AAAATGTGAAAATTTCTGTGCTTCTCAGTGATCTTTTGGACGTTGAAGAA
CGCATCGTTAGGGGGGTGGTGAGGAGTAAGGAAAGGGATGAAATAAGAGG
AGCGGAAATATTAGATGACTACTCAGCCACACGGCCCCCTCTTGAAGACG
ATAAGATCATCAAGGGGGCTAAAGCAGGCTTGGTAGAAATTCGGGAGTTT
GTAGACCTTCATAAGGGAACGTAtgaggccctctcccttttagATTTGTG
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