EWM28494.1, cds2187 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|585110910|gb|EWM28494.1| (replication protein a 32 kda [Nannochloropsis gaditana]) HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query: 1 MSYGGFEYGAPADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
MSYGGFEYGAPADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT
Sbjct: 1 MSYGGFEYGAPADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|551648393|ref|XP_005826979.1| (replication protein A2, 32kDa [Guillardia theta CCMP2712] >gi|428171079|gb|EKX39999.1| replication protein A2, 32kDa [Guillardia theta CCMP2712]) HSP 1 Score: 144.436 bits (363), Expect = 8.404e-38 Identity = 92/261 (35.25%), Postives = 140/261 (53.64%), Query Frame = 0
Query: 55 QKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLK-------PGAAVGSGMGLGMGMGM------GGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEY-SMGD-NGAELATVV----RALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
+K +LP+++ QV+NA QD D K+DG D QV II I+D+ ET+ + ++DGTG + ++ +QDESE+ R+ G YV VVGQVR + GKR + +R V D NE+TYHL + I H NT+G + P ++ S MG G GG G +G++ + P G G D+ EAV AF+++ + GD G + V R + +S ++ E LA +G +Y+T+DE H+ P+
Sbjct: 33 EKGMLPVSIKQVMNAPQDSQDE-DIKIDGRDTKQVTIIAYIVDVKETSTSVTFSLEDGTGNIDAIMWIDQDESEFMVRSRAEWVVGTYVRVVGQVRSHNGKRSMVAFHLRTVTDFNELTYHLFDTIHAHLYNTRGPLADSKPQTGFPSSSFQSPGKPSMGPGFTSPSQPGGAG--AGRVDSSRPAG--GPVTDMREAVHKAFIDFGATGDLTGLSIDNCVQQVSRVMGRSVSRAEVSSHIENLALDGHIYSTIDEEHFYPS 288
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|857974028|emb|CEO99830.1| (hypothetical protein PBRA_007564 [Plasmodiophora brassicae]) HSP 1 Score: 140.969 bits (354), Expect = 1.897e-36 Identity = 92/289 (31.83%), Postives = 143/289 (49.48%), Query Frame = 0
Query: 12 ADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDA--PTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVF--SEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
A+T+ GGG P G +PGG GG +P + +TL P+T+ Q+L A EP F VD +L+QVKI+G I+ + + AY IDD TG++ ++ D+SE + RS +G YV V G+V++Y ++++ +R + D NEI HL A H QN +G AA G G+ + G+ G + A+++ F++ GDNG + V R L G S Q+Q+ +++ EG LY+T D++HY+PT
Sbjct: 26 ANTFSGGGFFMSPSSG---------YAPGGASQDGG-IRPMQSDRTLTPVTIKQILTA---EPSTTESKFMVDKRELNQVKIVGCIIKVQVQSTNVAYTIDDSTGVIEVRLWQNDSDDDSEQVRMLRSALVEGVYVHVYGKVQEYNSVKNITGFSIRPLTDHNEIASHLAHAALTHLQNVRGV-----AAHQQPRGAGVDAPVVGFQR-----------SATNGLTPLQNAIMDVFVQSVSGDNGLSIQEVQRMLPGSYSYQQVQKDIAWMSNEGHLYSTCDDDHYRPT 285
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|676395353|ref|XP_009040954.1| (hypothetical protein AURANDRAFT_32654, partial [Aureococcus anophagefferens] >gi|323448499|gb|EGB04397.1| hypothetical protein AURANDRAFT_32654, partial [Aureococcus anophagefferens]) HSP 1 Score: 138.272 bits (347), Expect = 7.283e-36 Identity = 84/247 (34.01%), Postives = 139/247 (56.28%), Query Frame = 0
Query: 52 SKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDES-EYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMM-MAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
++++++L+P+T+ QVL+A + + F VDG +++QV+++G IL + Y I+D TG+L C ++ Q+E+ +ER G+YV V+G +++Y GK +VS +D+R ++D NEIT+H LEAI+ H + T +K G + G G VS M +G GGM V N + GD G + +V +L+ L NQ++ EFL+ EG LY+T+D++H+K T
Sbjct: 1 ARDKQSLIPMTIKQVLSATKAAGEDDGFAVDGREVNQVRVVGNILRQDKKETKHVYTIEDQTGMLECTMWVNQEEAGATVEERAEKMVNGSYVCVIGGLKEYNGKLNVSAYDVRPIEDFNEITHHYLEAIYSHAKQTNA--IKTGGGGAAAPASAFGAFNPSGGRVSADAMDTSGDGGMTAD----QTKVFNFYTTEGTGDEGCNVNSVASSLAMDL--NQVKHIVEFLSSEGHLYSTIDDDHHKST 239
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|635361777|emb|CCI49334.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 138.658 bits (348), Expect = 1.244e-35 Identity = 86/296 (29.05%), Postives = 145/296 (48.99%), Query Frame = 0
Query: 1 MSYGGFEYGAPADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
M+YG EY + + Y G GGFM Q G GG S++ +TLLP+T+ Q+ QD+ F+VDG ++ VK +G + +++ + +++DDG+GI+ +F Q++ ++A S G YV VGQ+R +QGK S + + ++D N +T+H LE ++ HC NTKG + KP + G G G S +G G ++ + ++ + D G + + + ++S +Q +L EG +Y+T+DENH+K T
Sbjct: 1 MNYG--EYDSHENKYSYGAGGFMGSSNQPSTQSFDKGDGTERSNIGG----SRDSQTLLPITLRQL--QAQDQVMDDVFRVDGREISMVKAVGILQNVIPHSTNVNFQLDDGSGIIDGRLFVAQEDLDHADNIMSRLHDGIYVSAVGQLRTFQGKTSFSCYSVVPIEDFNAMTHHFLEVMYTHCYNTKGNLQKPNPSQHQGSSTGTPWAPSG----STIDTNSGFGALDSSGFSPEQKIVIDVLGACTNDEGLSVDRIYAQVQHQMSEADLQNVLVYLTSEGHVYSTIDENHFKRT 284
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|1183380889|gb|ORY06321.1| (replication protein A, subunit RPA32 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 137.502 bits (345), Expect = 3.667e-35 Identity = 86/267 (32.21%), Postives = 134/267 (50.19%), Query Frame = 0
Query: 33 GMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLG--MGMGMGGYGGVSGKMMMAGPGGMNGGT-NDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
G +P G GG A+ L P+++ Q+L A Q DAP FKVD +L Q+ IG I E + +Y ++DGTG + + E D++E Q++R+ +G YV VVGQ + + KRHV MR ++D NEIT+H LE ++VH T+ +K G G YG + K P + G H+A++ A + + G + ++ + LS + +I QA E+L EG LY+T+D++H + T
Sbjct: 19 GESASTPTGTKRGGAAAQ------NLTPVSIKQLLEATQIHADAP-FKVDEHELSQITFIGIIRRQSEQSTNVSYIVEDGTGSIDVRTWLENDDNEIQQQKRAQLVEGIYVRVVGQFKQFASKRHVVAFSMRPIEDYNEITHHFLEVVYVHLFRTRNPSVKHEGEQGYQPSFSGDPFNPTGQYGNQAYKQ----PEPVYGNEFKPSHKAIIYAIKSFPDTNEGVHVESIAQKLSSQFGRAEISQAIEWLVGEGHLYSTIDDDHVRCT 274
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|1183478668|gb|ORZ02507.1| (hypothetical protein BCR43DRAFT_481650 [Syncephalastrum racemosum]) HSP 1 Score: 133.265 bits (334), Expect = 7.659e-34 Identity = 95/279 (34.05%), Postives = 134/279 (48.03%), Query Frame = 0
Query: 19 GGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDES-EYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
GGG+M F S G P +P EQ T+ P+T+ Q+L A D T ++DG D+ QV +G I +I E + Y I+DGTG L + +Q E+ E A ERR Q YV V G+ + GK V + + V D NEI+YH L+AI H + TKG PGAA G M N G N +++ VL +Y + GA + ++ AL G+ +I+ A E+L+ EG YTT+D+NH+K T
Sbjct: 7 GGGYM---------DTSFNS--GTTSASAPRRPMGEQ-TMRPITLRQLLKA--DLMHDSTLRIDGADVTQVTFVGVIRNISELSTNSTYMIEDGTGALEVKRWIDQSETVENAAERRE-LQTDMYVRVFGRPNQFNGKISVVSYRIIPVTDFNEISYHFLDAIRTHLRLTKG---TPGAAGGD------------------TTMSTANNSTNAGGN-INDDVLKIIKQYQESEMGASVDVILSALRGQHDETKIRDAIEYLSNEGHCYTTIDDNHFKST 248
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|325187467|emb|CCA22005.1| (replication protein A 32 kDa subunit putative [Albugo laibachii Nc14]) HSP 1 Score: 133.265 bits (334), Expect = 1.528e-33 Identity = 86/298 (28.86%), Postives = 144/298 (48.32%), Query Frame = 0
Query: 1 MSYGGFEYGAPADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMGMGGYGGVSGKMMMAGP--GGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
M+YG EY + + Y G GGFM QG G G S++ +TLLP+T+ Q+ QD+ F+VDG ++ VK +G + +++ + +++DDG+GI+ +F Q++ ++A S G YV VGQ+R +QGK S + + ++D N IT H LE ++ HC NT+G + K + G G M+ G ++ + + VL+ + D G + + + ++S Q+Q +L EG +Y+T+DENH+K T
Sbjct: 1 MNYG--EYDSHENKYSYGAGGFMGSSNQQSTQGFD----KGDGVERSNISGSRDSQTLLPITLRQL--QAQDQAMDDVFRVDGREISIVKAVGILQNVIPHSTNVNFQLDDGSGIIDGRLFVAQEDLDHADNIMSRLHDGIYVSAVGQLRTFQGKTSFSCYSVVPIEDFNAITLHFLEVMYTHCYNTRGNLQKANPS------QHQTSSTGAPWAPQGPMVNTNSDFGALDSSFSPEQKIVLDV-LGTCTNDEGLPVDRIYAQVQHQMSEPQLQNVLMYLTSEGHVYSTIDENHFKRT 283
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|1173943927|gb|OQR92724.1| (replication protein A 32 kDa subunit [Achlya hypogyna]) HSP 1 Score: 132.494 bits (332), Expect = 3.288e-33 Identity = 82/284 (28.87%), Postives = 146/284 (51.41%), Query Frame = 0
Query: 20 GGFMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGM------GMGMGGYGGVSGKMMMAGPGGMNGGTNDV-HEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
GG+M G G + Q + GG S++ +TL P+TV Q++ A + E T VDG +++ V+I+G + D+ + + + ++DGTG++S +F + D+ Y Q+ + G YV VG +R + GK ++ + V++ N++T+H LE I+ H +N G + A+ G G GM GG + + G +D +A+L+ S+ D G + + + L+G+L+ Q+++A +L EG +Y+T+DENH+K T
Sbjct: 8 GGYMEG-GYMESQAVTSSQKTGGN--------SRDNQTLTPVTVRQLMAAIRAEGGDDTVHVDGKEVNNVEIVGLLTDVSQNSTNITFSVNDGTGLISARLFLQADDDHYQQQLVESLRDGVYVAAVGNLRTFGGKTSLTCFSVTPVENFNQVTHHFLECIYTHLRNVHGALNSAPTAMKQDPGFGAQTGGYNSFGMSTGGGFGQQSTYQNFAATDSGFSDPGQQAILDILGASSL-DMGLSIDQIKQQLNGRLNDAQLREALGYLTNEGHIYSTIDENHFKRT 281
BLAST of EWM28494.1 vs. NCBI_GenBank
Match: gi|1214713811|gb|OWZ24691.1| (DAN Replication protein [Phytophthora megakarya]) HSP 1 Score: 130.568 bits (327), Expect = 8.748e-33 Identity = 74/260 (28.46%), Postives = 137/260 (52.69%), Query Frame = 0
Query: 42 GGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAV-----GSGMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT 296
G PAK S +++LP+++ Q+ D+ T ++DG ++ V+++G + ++ + +++DDG+G C F D+++ ++ + ++G+YV VVG++R +QGK VS ++ V+D NE+T+HLLE I+VHC NTKG + A V + G G G M+ + +A+L+ + D G ++ + L G+++ Q++ A +L EG +Y+T+DE+H+K T
Sbjct: 6 SGSQSTPAKRSGAAQSILPVSIRQLQTVNADDD---TLRLDGQEVSTVRLVGLLTNLTPHSTSLRFQLDDGSGAFDCQYFVTADDADASEGEMNRLREGSYVRVVGKLRTFQGKASVSCFNVTPVEDMNELTHHLLEVIYVHCYNTKGAVNHGNADVHMTSFNTPTKAAPGGNQWNQPSAGGFGGGMDYGVMDSNFSPEQKAILDV-LGTCTSDRGLKIDQIFSDLRGQMTEQQLRSALNYLTSEGHVYSTIDEDHFKRT 261 The following BLAST results are available for this feature:
BLAST of EWM28494.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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