rna2194, rna2194 (mRNA) Nannochloropsis gaditana

Overview
Namerna2194
Unique Namerna2194
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1416
Alignment locationCM002458.1:1130865..1132589 +

Link to JBrowse

Properties
Property NameValue
Productprotein phosphatase
Orig transcript idgnl|cribi|Naga_100058g22.4259.mrna
Orig protein idgnl|cribi|Naga_100058g22.4259
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1130865..1132589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100058g22gene2097Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2194rna2194-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28492.1cds2186Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2194 ID=rna2194|Name=rna2194|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp
ATGGCCGGCGACATTGCCCCAACAGGCACAAAGTTCACTCCTACCAATCC
TGACACAAGTGGAATTATTGTGACAGTGACGGGAGCGGTAGGATACCTTG
GTGAGCATTTGGTCAAAACATTTTTAGAAGCTGGCTATACCGTGCGAGGC
ACCGTGCGCGACGTGGACGATATAGAGAGGCTTCAGTGTTTGAAGTCCCT
TCCCGGTGCCACTGAGCGTCTCAGCCTCTTTGCAGCTAATCTCCTCGTTC
CTGGCTCCTTCGATAAGGCTATAGAAGGAGCCACCTACGTGCTTCATTCC
GCTTCACCGGTAGCTCTGGAAGTTGTCGCTGATCCCGAGGGAACTCTCAT
TCGTCCCGCCGTGGAAGGGACCAAGAATGTCCTCACCTCAGTTCACAAGT
CGACCAGTGTTAGACGCGTTGTATTGACAGGCTCGTTTCGGTCGATTTTT
GGCCTGGGCGACGAGCATCCGAAGGGGTATGTCTATACTGAGGAGGATTG
GAACGACAAGTCGTCTTTGGACAACAATCAAGGCTACGCTTTGAGCAAGA
CACTGGCAGAAAGAGCGGCATGGGCATTTGTGGAACGCGTCGCACCGACT
TCTTGGGACATGGTGGTTCTAAACCCAGGCCTCATCTTCGGCCCACTTCT
TAGTCGGTACCACCCGGATGCCTTCTCAGTTCAATTTTTTAAGCAGCTTG
TTACAGGCGAATTGCCCCCCGTCAAGCTTCCATGGGCCGTTGTAGATGTT
CGAGATGTCGCCATTGTACACGTGCGTGCCTTTCAACACGCACCTGCTCG
TGGTCGCTACCTAGTCACCAGCGGCACATACAGCCTTCGGGAAATGTTGG
ACTGCGTGCGAGATAAAATCTGGAGGCCACTCCTCCGTGTTTCAGTGCCT
AAGCCCTTATTGTGGATTGGTTTCTACACTGGATTTGTGGGGAAGAGGCT
TGCGAAAGAGGATATTAAACATAACGTCGGTTTCCGGATTTTGTTCGATA
GTAGCAAAGTCAGAAAAGAGCTTTTACCTGAAGGCTTCAGGGCCCCGAGA
CAGACATTTAGAGACATGTATGAGAGCTTACAGGAGCACAAAATTATAGG
TCATTTTAATTGAATGTGTACAATTTAGGTGTATGATTGATGCTGAATAT
GATTTTGTGGCAGAACATCACGTGGCTTCCGAGTCGACATTCGGCGGCCT
GAGGATGCAAATCCATCTTAAAGACATTTGATACACGGTAAGTGCACAAA
TGTGCTTCGAAGCATAAATATATCACAAGGGTGAAAATTTTGTCAGCAAA
CTTTTTTTCTTCCAAAATGAATGAATCTGGATAAGTACGAACAAGAAATT
CCGAATGGGGAACACAAGTCGGTAGGTTTGCCTTTCTTTTCGGATCTCGA
GCCAAAAGGCATCTTG
back to top

protein sequence of rna2194

>rna2194-protein ID=rna2194-protein|Name=rna2194|organism=Nannochloropsis gaditana|type=polypeptide|length=455bp
MTDTDPTGCRTTRSTRSCTSASIAERTQEEDAVDGILVEKREETFIHREK
HEVEFIDIPESPSPVGSIPSNTRASLGKARRKLSVVSTNALVDGIHDIRL
DETLNVDKQKGSVLPCLVSAYAGKSQKGFAPYHRRKKNQDALIMAEEPHT
STLFFCVLDGHGEFGELVSGFFQREMARNLFAHDHFEQDPRRAVIEVIAA
LESALVQDRRIDTAFSGTTLTAVLLRGDRVLVFNVGDSRVTVALHDAPNT
ADASVSSTSRESSMPMKKETLACTPSKARGLSFLSRRSLSLSTASNLPSP
PTPPLRSIRLSIDHKPDVAAEKARILAANGRVFAVRYDDGVDGPARVWLK
DLDVPGLAMSRSLGDVVAHTVGVSSEPEVFEYTLDSARDVFLVLATDGLW
EFMSDAEVVRMVGVAKDPQEAVETLIKEANTRWLKEEQVVDDTTVCVAFL
GEWRK
back to top

mRNA from alignment at CM002458.1:1130865..1132589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2194 ID=rna2194|Name=rna2194|organism=Nannochloropsis gaditana|type=mRNA|length=1725bp|location=Sequence derived from alignment at CM002458.1:1130865..1132589+ (Nannochloropsis gaditana)
ATCGCATGCTGCATTTCTGTTGTTAAATCTCAATACCATGCACACTCTTC
TATCTTTGTGCACGCATATGCATGTCAGGGAACACTGGAAGCGTTCTGGT
CTCGGAGACAGAAGACAGCTTATTAACTTGGGAAAGCCCATATGACGGAT
ACCGACCCTACCGGCTGTCGCACAACGCGGAGCACACGTTCCTGCACATC
AGCAAGTATAGCAGAGAGGAcacaagaagaagatgcTGTGGATGGCATTT
TggtggaaaaaagggaggaaacctTTATCCATCGAGAAAAGCACGAAGTG
GAGTTTATCGACATCCCCGAGTCCCCTTCGCCTGTTGGCTCTATCCCATC
GAATACCCGTGCCAGTTTGGGTAAAGCACGGAGGAAGCTTAGCGTAGTAA
GCACAAATGCGCTTGTGGACGGCATTCATGATATTCGCTTAGACGAAACG
TTGAACGTAGACAAACAAAAAGGGAGCGTGCTACCCTGCCTCGTTAGTGC
CTACGCTGGCAAAAGCCAGAAGGGTTTTGCACCGTACCACCGCCGGAAGA
AGAACCAAGATGCCTTAATCATGGCAGAAGAGCCGCACACGTCCACTCTT
TTCTTCTGTGTACTGGATGGCCATGGCGAATTCGGAGAGCTGGTGTCAGG
CTTTTTTCAACGCGAAATGGCTCGAAATTTATTCGCCCACGACCATTTTG
AGCAAGATCCTCGTCGTGCCGTAATTGAGGTAATAGCGGCATTGGAAAGC
GCCCTGGTACAAGACCGGAGGATAGACACGGCCTTTTCGGGGACCACATT
GACGGCCGTATTATTGCGGGGGGATCGTGTATTGGTGTTCAATGTCGGAG
ATTCCCGCGTCACTGTGGCATTGCATGACGCACCCAACACCGCAGACGCT
AGCGTTAGCTCCACGAGCCGTGAAAGTTCAATGCCGATGAAAAAGGAGAC
TCTAGCCTGCACGCCCTCGAAAGCGCGCggcctttccttcttgtcccgac
ggtctctctccttgtccaccgcgtccaatttaccctccccccccaccccc
ccgctGAGATCCATTCGCCTCTCCATCGACCACAAACCCGACGTGGCCGC
CGAAAAAGCCCGAATTCTTGCCGCTAATGGCCGCGTGTTCGCTGTCCGCT
ACGACGACGGGGTTGACGGACCCGCAAGAGTCTGGCTGAAGGACTTGGAC
GTGCCCGGTCTCGCCATGTCCCGATCCCTGGGCGATGTGGTCGCGCACAC
GGTGGGTGTTTCTTCCGAGCCGGAAGTGTTTGAATACACCTTGGATTCGG
CCCGGGACGTGTTTTTGGTCCTCGCGACCGACGGCTTGTGGGAGTTTATG
TCGGAtgcggaggtggtgaggatggtgggagtggcCAAAGACCcgcagga
ggcggtggaaacGCTCATCAAGGAGGCAAACACCCGGTggctgaaggagg
agcaggtggtggacgacACGACGGTCTGCGTGGCCTTTCTGGGGGAGTGG
CGGAAGTAGGAGGCGCCTAGGAGCGGGGGGACctcgaggagagggcgcag
aTCCTTGCCACGCTCGGACGATCGTGAAACACATGGGCGTATCGATAACA
AAAAAGGGGTTAGGGTGGTAGAAATGGAGATTAAAATATTCCAAATCTGA
ATCGTAACGTCTCTCAGCCTGAAACTTATGAGGGAATAAAAACAGTCACC
GCTCTTGGAAACACACAGAATTTCC
back to top

Coding sequence (CDS) from alignment at CM002458.1:1130865..1132589+

>rna2194 ID=rna2194|Name=rna2194|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at CM002458.1:1130865..1132589+ (Nannochloropsis gaditana)
ATGACGGATACCGACCCTACCGGCTGTCGCACAACGCGGAGCACACGTTC
CTGCACATCAGCAAGTATAGCAGAGAGGAcacaagaagaagatgcTGTGG
ATGGCATTTTggtggaaaaaagggaggaaacctTTATCCATCGAGAAAAG
CACGAAGTGGAGTTTATCGACATCCCCGAGTCCCCTTCGCCTGTTGGCTC
TATCCCATCGAATACCCGTGCCAGTTTGGGTAAAGCACGGAGGAAGCTTA
GCGTAGTAAGCACAAATGCGCTTGTGGACGGCATTCATGATATTCGCTTA
GACGAAACGTTGAACGTAGACAAACAAAAAGGGAGCGTGCTACCCTGCCT
CGTTAGTGCCTACGCTGGCAAAAGCCAGAAGGGTTTTGCACCGTACCACC
GCCGGAAGAAGAACCAAGATGCCTTAATCATGGCAGAAGAGCCGCACACG
TCCACTCTTTTCTTCTGTGTACTGGATGGCCATGGCGAATTCGGAGAGCT
GGTGTCAGGCTTTTTTCAACGCGAAATGGCTCGAAATTTATTCGCCCACG
ACCATTTTGAGCAAGATCCTCGTCGTGCCGTAATTGAGGTAATAGCGGCA
TTGGAAAGCGCCCTGGTACAAGACCGGAGGATAGACACGGCCTTTTCGGG
GACCACATTGACGGCCGTATTATTGCGGGGGGATCGTGTATTGGTGTTCA
ATGTCGGAGATTCCCGCGTCACTGTGGCATTGCATGACGCACCCAACACC
GCAGACGCTAGCGTTAGCTCCACGAGCCGTGAAAGTTCAATGCCGATGAA
AAAGGAGACTCTAGCCTGCACGCCCTCGAAAGCGCGCggcctttccttct
tgtcccgacggtctctctccttgtccaccgcgtccaatttaccctccccc
cccacccccccgctGAGATCCATTCGCCTCTCCATCGACCACAAACCCGA
CGTGGCCGCCGAAAAAGCCCGAATTCTTGCCGCTAATGGCCGCGTGTTCG
CTGTCCGCTACGACGACGGGGTTGACGGACCCGCAAGAGTCTGGCTGAAG
GACTTGGACGTGCCCGGTCTCGCCATGTCCCGATCCCTGGGCGATGTGGT
CGCGCACACGGTGGGTGTTTCTTCCGAGCCGGAAGTGTTTGAATACACCT
TGGATTCGGCCCGGGACGTGTTTTTGGTCCTCGCGACCGACGGCTTGTGG
GAGTTTATGTCGGAtgcggaggtggtgaggatggtgggagtggcCAAAGA
CCcgcaggaggcggtggaaacGCTCATCAAGGAGGCAAACACCCGGTggc
tgaaggaggagcaggtggtggacgacACGACGGTCTGCGTGGCCTTTCTG
GGGGAGTGGCGGAAGTAG
back to top
Synonyms
Publications