rna2145, rna2145 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2145
Unique Name	rna2145
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1029
Alignment location	CM002458.1:984529..987052 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphoinositol transporter
Orig transcript id	gnl\|cribi\|Naga_100009g15.655.mrna
Orig protein id	gnl\|cribi\|Naga_100009g15.655
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:984529..987052 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g15	gene2048	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2145	rna2145-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28612.1	cds2137	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:984529..987052+
coding sequence from alignment at CM002458.1:984529..987052+

mRNA sequence

>rna2145 ID=rna2145|Name=rna2145|organism=Nannochloropsis gaditana|type=mRNA|length=1029bp
ATGCTCAAAGTAGACGGTGGGAAAACTCAAGTGCTTTTTGACCACTCTGC
TCAGTTCCTGAGTGCGCCGTCCTCCTATGTTTCCACCTCCCCGTCCTCCC
CCTCTGACACCTGGAACAAGTGGGTATGCGAGATGGAGTGCGACGGCATA
CTCCGCGAATGGGACAGCCAACGTATTGGAACCCTTTCCAGAGGCGGGGT
CTTTTCGCCCCGCGCCACAGACTCAGGCGGCGTGCAGCCTCGCGCACTGA
TCGGAAGCGGTGGCATGCGGGCTATCCCGGCTTACATGGCAAGAAACCTC
GAGATTGACAGGCCTAAATGGGTGTCAAAGGCCAGGCAGAACAAAGACGG
CACATGGCGCCTCTGGCACTACCAAGAGGAACTGGATGACTTCGACTACC
TTGTAGTCGCCCACAATGGGAAATGTGCGGCACGTTTGATGAAATCTGCA
GGACCGGCACTGGCGCCCGTTGCCCGTCTCTTGGAGACCAAATTCGGCGC
CAACCTCCGCGGAGGCTCGACTCCACGGTTCATGCAACTGTGTAGCTTGT
ACGTGCTCATGGTGGTGTTAGACGGTCCTGTGCCGCTGCCGACACCGAAT
TTGGAAGGCGCTTTTGTGGAAGGGGTGCCAGCTCTGTCCTGGGTGGCCGA
CCAAGGGGCAAAGCTCGGGCAGAACGTGGAGAAGGGCCCAGAAAACGAGG
GCACAAGGAGGGCGTGGGTCATCGTCTCTTCCCCAACCTTTGCCGAAGAG
CACAAGGTTCCCCAGGAGAATATTCCCATTGAGACAGCCGCAGAGGTCAC
CTCTCTCTTGTTACAGGCTTTTCGCCTGGCGTTGGGAAAGGAAGGGCGAG
AATACGACGCGGCCTTCAAGGTCTCCACTTCCGCTTTACAGTTGTGGGGA
GCCGGGAACCCGATCTCTGTGGCAGACGTGTCGGAGGAGGTACCCTTCAT
CTTCCAGGCAAGCACGGGGTGTGGAGTGTGTGGGGATTGGATGTTGGCCC
CTTCGATACCCGCGGCAGCCAGACACTAG

protein sequence of rna2145

>rna2145-protein ID=rna2145-protein|Name=rna2145|organism=Nannochloropsis gaditana|type=polypeptide|length=729bp
MGQAQTSSFVSPFAAPPLMLNTDDLVRNWMTDGNNDTRYHYHGQSRSERR
RCRSDGAKASSTSPPVDNGVTGVMVQCGPQIESQKHKLLSTSPAFIFMMI
RHQNGEEVILSREAVHGATSRLTYSRHQKDIVLVLSDHPAVHLPARAIAT
KAGMGEMLFVREGRSRARDRSTEKRICKPMHSMTLLARPGGRSHDFLCGF
QNIIATVLSSVQLQAVLPRVASDWEAHLALVLVNVACWHRDLPGLTLLFL
GMLLVAEAFRWHTIEIVLGEGGRDRQLLRAVPWDWEVNIGRCLMRWRRVS
CASPRISKARPAITTRSVMKEEEMAVFGETQVILEEMIDLEETVEQVAMS
EEELAVTVIPSGNSVALSEVSAQETDRSIYGSQRQASDTVIAAEHRPRST
DATAATVHEVEEAEVSACPFACPLEYSEKNPSSSEIAAPRRRSIENISIT
STGVRRPPLPLRYLTVTGNNVAKAQAKWAATLRWRAAYGADTILEAPHTN
YGLIKKQFPQFVAGRSRSGNPVYYEMSTRIDARALTSQGVDVDEMIRHYV
WTNEYIYSRWVPDPEGQIISVVDLSGLSIGGMSTLSLEFVSKALTLIGAH
YPARAQAILIVNAPIFFSYIWNLVKGAADEYTSKSLKVYSRDESFAALCE
YIEPAQIPVEYGGTLKYGASRGMNEERKHERQHSVRWTSPFEKEMEAHAN
RIIESTKCGIMGSNDDEKKIERRSVAGGT

mRNA from alignment at CM002458.1:984529..987052+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2145 ID=rna2145|Name=rna2145|organism=Nannochloropsis gaditana|type=mRNA|length=2524bp|location=Sequence derived from alignment at CM002458.1:984529..987052+ (Nannochloropsis gaditana)
TCCGGGAAAATGCTTCATTTAACACTTATATATCCTATTTAACGCAAAAT
GCAAACATACCCTCATCGAAAGCACAGGGTTGTTTAGGAATGGGGCAGGC
GCAGACCTCATCCTTCGTTAGTCCGTTTGCCGCACCACCACTGATGCTAA
ATACAGACGACCTGGTTCGCAATTGGATGACTGACGGAAACAATGACACA
AGGTATCATTATCACGGTCAGTCTCGCAGCGAACGGCGTCGTTGCCGCTC
GGACGGCGCGAAAGCTTCATCTACCTCGCCGCCTGTGGACAATGGCGTAA
CTGGTGTCATGGTCCAATGTGGTCCGCAAATCGAATCTCAGAAACATAAA
TTGCTCTCAACCTCACCCGCTTTCATTTTTATGATGATACGGCACCAAAA
TGGAGAAGAGGTGATCCTTTCCCGCGAGGCTGTGCACGGTGCGACCAGCA
GGCTGACGTACTCGCGGCACCAAAAAGACATAGTCTTGGTTCTCAGCGAC
CATCCAGCGGTCCATTTGCCCGCACGAGCAATTGCTACGAAAGCAGGCAT
GGGGGAAATGCTGTTCGTTAGGGAAGGTCGATCGCGAGCACGGGACCGGA
GTACGGAAAAAAGAATCTGCAAACCCATGCATTCGATGACGCTTCTTGCC
CGTCCTGGTGGCCGCTCGCACGACTTTCTTTGTGGCTTCCAGAATATCAT
CGCTACTGTGCTATCTTCTGTGCAGCTTCAGGCCGTGTTGCCCAGGGTGG
CGAGCGATTGGGAAGCACACCTGGCTCTTGTCCTTGTAAATGTGGCCTGC
TGGCACCGAGACTTGCCAGGCTTAACATTGCTTTTCTTGGGTATGCTGCT
CGTTGCGGAGGCATTCAGATGGCATACCATTGAGATTGTActgggcgaag
gaggacgtgatcggCAGCTCCTGCGTGCAGTGCCTTGGGATTGGGAGGTG
AATATAGGAAGATGCCTGATGCGCTGGCGCCGAGTAAGCTGCGCTTCACC
GAGAATATCAAAAGCCAGGCCTGCAATCACTACCAGGAGCGtgatgaaag
aagaagaaatggcaGTCTTCGGGGAAACTCAAGTGATTCTAGAAGAAATG
ATTGACCTCGAGGAGACCGTTGAGCAGGTGGCCATGTCTGAAGAGGAGCT
GGCTGTTACCGTGATCCCGTCAGGAAATTCAGTGGCCCTCTCAGAGGTTT
CTGCGCAAGAAACAGACCGAAGCATTTATGGATCGCAGCGTCAGGCCTCT
GATACCGTGATCGCCGCCGAGCATCGTCCTCGGTCAACTGATGCGACGGC
GGCAACAGTCCACGAAGTTGAAGAGGCTGAAGTTTCAGCATGCCCCTTTG
CCTGTCCATTGGAATACTCAGAAAAaaatccttcttcctctgaaATAGCC
GcaccgagaaggagaagcattGAGAACATCTCCATCACATCCACAGGTGT
GCGTAGACCGCCATTACCATTGCGGTACCTCACCGTAACAGGCAACAACG
TAGCAAAAGCGCAGGCTAAATGGGCTGCCACCCTCAGGTGGCGCGCTGCG
TATGGGGCAGACACAATCCTAGAAGCACCTCACACAAACTACGGCCTCAT
CAAGAAGCAGTTTCCACAATTTGTGGCAGGCAGGAGCCGGAGTGGAAATC
CCGTGGTAAGACGGGGAACGCAGGCGCTGTACACCATCAAGCTCTCTCAC
TCCCCCCTGCTCTTCACTCAATTTTCCCCATAGTACTACGAAATGAGCAC
AAGGATTGACGCCAGGGCTCTTACGTCccagggcgtggacgtggacgaaA
TGATTCGGCATTATGTCTGGACTAACGAGTACATATACTCGCGGTGGGTT
CCCGATCCCGAAGGACAGATCATTTCCGTCGTGGACTTGTCGGGGTTATC
TATTGGTGGTATGTCCACCCTTTCGCTTGAGTTCGTATCGAAGGCTTTGA
CATTGATAGGGGCCCACtaccccgcccgcgcccaggccatcctcatcgtc
aaTGCCCCGATCTTCTTTTCGTATATCTGGAATCTCGTAAAGGGAGCCGC
CGACGAATACACCAGCAAATCCTTGAAAGTTTATAGCCGTGATGAATCCT
TTGCGGCATTGTGCGAGTATATTGAGCCAGCTCAAATCCCAGTCGAATAT
GGAGGCACTTTAAAGTATGGTGCATCCAGAGGCATGAATGAGGAGCGCAA
GCACGAGAGGCAACACAGCGTGCGGTGGACAAGCCCATTTgaaaaggaaa
tggaagcacATGCCAACCGCATCATTGAATCAACGAAATGTGGCATCATG
GGCTCAAATGATGACGAGAAGAAAATTGAAAGGAGAAGCGTAGCCGGTGG
GACGTAACCAGCAAACAAAGGACAGTAGAGCATTTATTACGAAAGCAAGG
ATTGAGCGAATTGTCCTCATGTTTCTTCTTCAAATGAAAAGTTCTCCGAA
GGCGTCCTTTATGGAAACAAACCAAATTCATACAAATGAAGAGAAAATAT
ACCAAAAAAGGCATTTAACTTGGA

Coding sequence (CDS) from alignment at CM002458.1:984529..987052+

>rna2145 ID=rna2145|Name=rna2145|organism=Nannochloropsis gaditana|type=CDS|length=4380bp|location=Sequence derived from alignment at CM002458.1:984529..987052+ (Nannochloropsis gaditana)
ATGGGGCAGGCGCAGACCTCATCCTTCGTTAGTCCGTTTGCCGCACCACC
ACTGATGCTAAATACAGACGACCTGGTTCGCAATTGGATGACTGACGGAA
ACAATGACACAAGGTATCATTATCACGGTCAGTCTCGCAGCGAACGGCGT
CGTTGCCGCTCGGACGGCGCGAAAGCTTCATCTACCTCGCCGCCTGTGGA
CAATGGCGTAACTGGTGTCATGGTCCAATGTGGTCCGCAAATCGAATCTC
AGAAACATAAATTGCTCTCAACCTCACCCGCTTTCATTTTTATGATGATA
CGGCACCAAAATGGAGAAGAGGTGATCCTTTCCCGCGAGGCTGTGCACGG
TGCGACCAGCAGGCTGACGTACTCGCGGCACCAAAAAGACATAGTCTTGG
TTCTCAGCGACCATCCAGCGGTCCATTTGCCCGCACGAGCAATTGCTACG
AAAGCAGGCATGGGGGAAATGCTGTTCGTTAGGGAAGGTCGATCGCGAGC
ACGGGACCGGAGTACGGAAAAAAGAATCTGCAAACCCATGCATTCGATGA
CGCTTCTTGCCCGTCCTGGTGGCCGCTCGCACGACTTTCTTTGTGGCTTC
CAGAATATCATCGCTACTGTGCTATCTTCTGTGCAGCTTCAGGCCGTGTT
GCCCAGGGTGGCGAGCGATTGGGAAGCACACCTGGCTCTTGTCCTTGTAA
ATGTGGCCTGCTGGCACCGAGACTTGCCAGGCTTAACATTGCTTTTCTTG
GGTATGCTGCTCGTTGCGGAGGCATTCAGATGGCATACCATTGAGATTGT
ActgggcgaaggaggacgtgatcggCAGCTCCTGCGTGCAGTGCCTTGGG
ATTGGGAGGTGAATATAGGAAGATGCCTGATGCGCTGGCGCCGAGTAAGC
TGCGCTTCACCGAGAATATCAAAAGCCAGGCCTGCAATCACTACCAGGAG
CGtgatgaaagaagaagaaatggcaGTCTTCGGGGAAACTCAAGTGATTC
TAGAAGAAATGATTGACCTCGAGGAGACCGTTGAGCAGGTGGCCATGTCT
GAAGAGGAGCTGGCTGTTACCGTGATCCCGTCAGGAAATTCAGTGGCCCT
CTCAGAGGTTTCTGCGCAAGAAACAGACCGAAGCATTTATGGATCGCAGC
GTCAGGCCTCTGATACCGTGATCGCCGCCGAGCATCGTCCTCGGTCAACT
GATGCGACGGCGGCAACAGTCCACGAAGTTGAAGAGGCTGAAGTTTCAGC
ATGCCCCTTTGCCTGTCCATTGGAATACTCAGAAAAaaatccttcttcct
ctgaaATAGCCGcaccgagaaggagaagcattGAGAACATCTCCATCACA
TCCACAGGTGTGCGTAGACCGCCATTACCATTGCGGTACCTCACCGTAAC
AGGCAACAACGTAGCAAAAGCGCAGGCTAAATGGGCTGCCACCCTCAGGT
GGCGCGCTGCGTATGGGGCAGACACAATCCTAGAAGCACCTCACACAAAC
TACGGCCTCATCAAGAAGCAGTTTCCACAATTTGTGGCAGGCAGGAGCCG
GAGTGGAAATCCCGTGTACTACGAAATGAGCACAAGGATTGACGCCAGGG
CTCTTACGTCccagggcgtggacgtggacgaaATGATTCGGCATTATGTC
TGGACTAACGAGTACATATACTCGCGGTGGGTTCCCGATCCCGAAGGACA
GATCATTTCCGTCGTGGACTTGTCGGGGTTATCTATTGGTGGTATGTCCA
CCCTTTCGCTTGAGTTCGTATCGAAGGCTTTGACATTGATAGGGGCCCAC
taccccgcccgcgcccaggccatcctcatcgtcaaTGCCCCGATCTTCTT
TTCGTATATCTGGAATCTCGTAAAGGGAGCCGCCGACGAATACACCAGCA
AATCCTTGAAAGTTTATAGCCGTGATGAATCCTTTGCGGCATTGTGCGAG
TATATTGAGCCAGCTCAAATCCCAGTCGAATATGGAGGCACTTTAAAGTA
TGGTGCATCCAGAGGCATGAATGAGGAGCGCAAGCACGAGAGGCAACACA
GCGTGCGGTGGACAAGCCCATTTgaaaaggaaatggaagcacATGCCAAC
CGCATCATTGAATCAACGAAATGTGGCATCATGGGCTCAAATGATGACGA
GAAGAAAATTGAAAGGAGAAGCGTAGCCGGTGGGACGTAAATGGGGCAGG
CGCAGACCTCATCCTTCGTTAGTCCGTTTGCCGCACCACCACTGATGCTA
AATACAGACGACCTGGTTCGCAATTGGATGACTGACGGAAACAATGACAC
AAGGTATCATTATCACGGTCAGTCTCGCAGCGAACGGCGTCGTTGCCGCT
CGGACGGCGCGAAAGCTTCATCTACCTCGCCGCCTGTGGACAATGGCGTA
ACTGGTGTCATGGTCCAATGTGGTCCGCAAATCGAATCTCAGAAACATAA
ATTGCTCTCAACCTCACCCGCTTTCATTTTTATGATGATACGGCACCAAA
ATGGAGAAGAGGTGATCCTTTCCCGCGAGGCTGTGCACGGTGCGACCAGC
AGGCTGACGTACTCGCGGCACCAAAAAGACATAGTCTTGGTTCTCAGCGA
CCATCCAGCGGTCCATTTGCCCGCACGAGCAATTGCTACGAAAGCAGGCA
TGGGGGAAATGCTGTTCGTTAGGGAAGGTCGATCGCGAGCACGGGACCGG
AGTACGGAAAAAAGAATCTGCAAACCCATGCATTCGATGACGCTTCTTGC
CCGTCCTGGTGGCCGCTCGCACGACTTTCTTTGTGGCTTCCAGAATATCA
TCGCTACTGTGCTATCTTCTGTGCAGCTTCAGGCCGTGTTGCCCAGGGTG
GCGAGCGATTGGGAAGCACACCTGGCTCTTGTCCTTGTAAATGTGGCCTG
CTGGCACCGAGACTTGCCAGGCTTAACATTGCTTTTCTTGGGTATGCTGC
TCGTTGCGGAGGCATTCAGATGGCATACCATTGAGATTGTActgggcgaa
ggaggacgtgatcggCAGCTCCTGCGTGCAGTGCCTTGGGATTGGGAGGT
GAATATAGGAAGATGCCTGATGCGCTGGCGCCGAGTAAGCTGCGCTTCAC
CGAGAATATCAAAAGCCAGGCCTGCAATCACTACCAGGAGCGtgatgaaa
gaagaagaaatggcaGTCTTCGGGGAAACTCAAGTGATTCTAGAAGAAAT
GATTGACCTCGAGGAGACCGTTGAGCAGGTGGCCATGTCTGAAGAGGAGC
TGGCTGTTACCGTGATCCCGTCAGGAAATTCAGTGGCCCTCTCAGAGGTT
TCTGCGCAAGAAACAGACCGAAGCATTTATGGATCGCAGCGTCAGGCCTC
TGATACCGTGATCGCCGCCGAGCATCGTCCTCGGTCAACTGATGCGACGG
CGGCAACAGTCCACGAAGTTGAAGAGGCTGAAGTTTCAGCATGCCCCTTT
GCCTGTCCATTGGAATACTCAGAAAAaaatccttcttcctctgaaATAGC
CGcaccgagaaggagaagcattGAGAACATCTCCATCACATCCACAGGTG
TGCGTAGACCGCCATTACCATTGCGGTACCTCACCGTAACAGGCAACAAC
GTAGCAAAAGCGCAGGCTAAATGGGCTGCCACCCTCAGGTGGCGCGCTGC
GTATGGGGCAGACACAATCCTAGAAGCACCTCACACAAACTACGGCCTCA
TCAAGAAGCAGTTTCCACAATTTGTGGCAGGCAGGAGCCGGAGTGGAAAT
CCCGTGTACTACGAAATGAGCACAAGGATTGACGCCAGGGCTCTTACGTC
ccagggcgtggacgtggacgaaATGATTCGGCATTATGTCTGGACTAACG
AGTACATATACTCGCGGTGGGTTCCCGATCCCGAAGGACAGATCATTTCC
GTCGTGGACTTGTCGGGGTTATCTATTGGTGGTATGTCCACCCTTTCGCT
TGAGTTCGTATCGAAGGCTTTGACATTGATAGGGGCCCACtaccccgccc
gcgcccaggccatcctcatcgtcaaTGCCCCGATCTTCTTTTCGTATATC
TGGAATCTCGTAAAGGGAGCCGCCGACGAATACACCAGCAAATCCTTGAA
AGTTTATAGCCGTGATGAATCCTTTGCGGCATTGTGCGAGTATATTGAGC
CAGCTCAAATCCCAGTCGAATATGGAGGCACTTTAAAGTATGGTGCATCC
AGAGGCATGAATGAGGAGCGCAAGCACGAGAGGCAACACAGCGTGCGGTG
GACAAGCCCATTTgaaaaggaaatggaagcacATGCCAACCGCATCATTG
AATCAACGAAATGTGGCATCATGGGCTCAAATGATGACGAGAAGAAAATT
GAAAGGAGAAGCGTAGCCGGTGGGACGTAA

Synonyms

Publications