EWM28627.1, cds2106 (CDS) Nannochloropsis gaditana

Overview
NameEWM28627.1
Unique Namecds2106
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:922130..922223 -
Alignment locationCM002458.1:921854..921938 -
Alignment locationCM002458.1:921556..921743 -
Alignment locationCM002458.1:920523..921382 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28627.1
Productpyruvate decarboxylase
Orig transcript idgnl|cribi|Naga_100009g44.670.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:922130..922223 -
CM002458.1supercontigCM002458.1:921854..921938 -
CM002458.1supercontigCM002458.1:921556..921743 -
CM002458.1supercontigCM002458.1:920523..921382 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0000287magnesium ion binding
GO:0030976thiamine pyrophosphate binding
Vocabulary: INTERPRO
TermDefinition
IPR012000Thiamin_PyroP_enz_cen_dom
IPR029035DHS-like_NAD/FAD-binding_dom
IPR029061THDP-binding
IPR012001Thiamin_PyroP_enz_TPP-bd_dom
Homology
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|585111045|gb|EWM28627.1| (pyruvate decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query:    1 MSDGNTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQKTVEF 408
            MSDGNTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQKTVEF
Sbjct:    1 MSDGNTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQKTVEF 408          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|553188824|ref|XP_005854872.1| (pyruvate decarboxylase [Nannochloropsis gaditana CCMP526] >gi|422294180|gb|EKU21480.1| pyruvate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 390/393 (99.24%), Postives = 392/393 (99.75%), Query Frame = 0
Query:    1 MSDGNTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETG 393
            MSDGNTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGK+DRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPP KPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEAR+AARPAETLLTMRFVHEQVQNLLTPKTALLVETG
Sbjct:    1 MSDGNTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKMDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPRKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARLAARPAETLLTMRFVHEQVQNLLTPKTALLVETG 393          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|585111044|gb|EWM28626.1| (pyruvate decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query:   61 YAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETG 393
            YAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETG
Sbjct:   17 YAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISEEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGEYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETG 349          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|923926618|ref|XP_013732259.1| (PREDICTED: pyruvate decarboxylase 1-like [Brassica napus])

HSP 1 Score: 383.645 bits (984), Expect = 4.082e-125
Identity = 195/401 (48.63%), Postives = 264/401 (65.84%), Query Frame = 0
Query:    9 SNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISE----EHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGE-YGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            + +G +L RRL+  G+++ + VPGD+NL LLD L+  PELK I CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSND+ ++RILHHTIG  D  Q++  F  V      + +   A  QID AI TA+ + KPVY+ ++CN++       +  P+PF +  P+ SN   L AAV+ TL     A KPVIV GVK+R+A+A DA + LADA+G A+A MP AKG+ PE+HP +IGTYWG VS+    E VESAD YIF G  FNDY++ GY+ L+KK+  +  + DRV    G+ +GCV M+EF   LAK + RN+ + + Y RIF P+ +  A  A   L +  + + VQ +L+ +TA++ ETG     W + QK
Sbjct:   46 ATLGRHLGRRLVQAGVRDIFTVPGDFNLTLLDHLIAEPELKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDKAISTALKESKPVYISISCNLAATPHPTFIRDPVPFSL-TPRSSNKMGLEAAVEATLEFLNKAVKPVIVGGVKLRVAKASDAFVDLADASGYAMAVMPSAKGLVPENHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYSSVGYSLLLKKEKAIVVHPDRVTVANGQTFGCVLMSEFFTELAKRVKRNETAYENYRRIFVPQGKPIACKAREPLRVNTMFQHVQKMLSSETAVIAETGDS---WFNCQK 442          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|922557570|ref|XP_013606887.1| (PREDICTED: pyruvate decarboxylase 1-like [Brassica oleracea var. oleracea] >gi|674922890|emb|CDY10495.1| BnaCnng03960D [Brassica napus])

HSP 1 Score: 383.645 bits (984), Expect = 4.548e-125
Identity = 195/401 (48.63%), Postives = 264/401 (65.84%), Query Frame = 0
Query:    9 SNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISE----EHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGE-YGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            + +G +L RRL+  G+++ + VPGD+NL LLD L+  PELK I CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSND+ ++RILHHTIG  D  Q++  F  V      + +   A  QID AI TA+ + KPVY+ ++CN++       +  P+PF +  P+ SN   L AAV+ TL     A KPVIV GVK+R+A+A DA + LADA+G A+A MP AKG+ PE+HP +IGTYWG VS+    E VESAD YIF G  FNDY++ GY+ L+KK+  +  + DRV    G+ +GCV M+EF   LAK + RN+ + + Y RIF P+ +  A  A   L +  + + VQ +L+ +TA++ ETG     W + QK
Sbjct:   46 ATLGRHLGRRLVQAGVRDIFTVPGDFNLTLLDHLIAEPELKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDKAISTALKESKPVYISISCNLAATPHPTFIRDPVPFSL-TPRSSNKMGLEAAVEATLEFLNKAVKPVIVGGVKLRVAKASDAFVDLADASGYAMAVMPSAKGLVPENHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYSSVGYSLLLKKEKAIVVHPDRVTVANGQTFGCVLMSEFFTELAKRVKRNETAYENYRRIFVPQGKPIACKAREPLRVNTMFQHVQKMLSSETAVIAETGDS---WFNCQK 442          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|1072983400|ref|XP_018442241.1| (PREDICTED: pyruvate decarboxylase 4-like isoform X2 [Raphanus sativus])

HSP 1 Score: 383.259 bits (983), Expect = 5.366e-125
Identity = 195/401 (48.63%), Postives = 266/401 (66.33%), Query Frame = 0
Query:    9 SNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNI-SEEHVSL---PIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGE-YGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            + +G +LARRL+  G+ + ++VPGD+NL LLD L+  PELK I CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSND+ ++RILHHTIG  D  Q++  F  V      + +   A  +ID AI TA+ + KPVY+ ++CN+ S  H +    P+PF +  P+ SN   L AAV+ TL     A KPV+V GVK+R+A+A DA +QLADA+G A+A MP AKG+ PE+HP +IGTYWG VS+    E VESAD YIF G  FNDY + GY+ L+KK+  +  + DRV    G+ +GCV M+EF   L+K + RN+ + + Y RIF P+ +  A  A   L +  + + +Q +L+ +TA++ ETG     W + QK
Sbjct:   45 ATLGRHLARRLVQAGVTDIFSVPGDFNLTLLDHLIAEPELKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFTQELRCFHTVTCYQAVVNNLEDAHEEIDKAISTALKESKPVYISISCNLASTPHPTFIRDPVPFSL-TPRSSNPMGLHAAVEATLDFLNKAVKPVMVAGVKLRVAKASDAFVQLADASGYAMAVMPSAKGLVPENHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYTSVGYSLLLKKEKAILVHPDRVTVANGQTFGCVLMSEFFTELSKRVKRNETAYENYHRIFVPQGKPIACKAREPLRVNTMFQHIQKMLSSQTAVIAETGDS---WFNCQK 441          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|1072983398|ref|XP_018442240.1| (PREDICTED: pyruvate decarboxylase 4-like isoform X1 [Raphanus sativus])

HSP 1 Score: 382.874 bits (982), Expect = 1.007e-124
Identity = 195/401 (48.63%), Postives = 266/401 (66.33%), Query Frame = 0
Query:    9 SNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNI-SEEHVSL---PIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGE-YGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            + +G +LARRL+  G+ + ++VPGD+NL LLD L+  PELK I CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSND+ ++RILHHTIG  D  Q++  F  V      + +   A  +ID AI TA+ + KPVY+ ++CN+ S  H +    P+PF +  P+ SN   L AAV+ TL     A KPV+V GVK+R+A+A DA +QLADA+G A+A MP AKG+ PE+HP +IGTYWG VS+    E VESAD YIF G  FNDY + GY+ L+KK+  +  + DRV    G+ +GCV M+EF   L+K + RN+ + + Y RIF P+ +  A  A   L +  + + +Q +L+ +TA++ ETG     W + QK
Sbjct:   45 ATLGRHLARRLVQAGVTDIFSVPGDFNLTLLDHLIAEPELKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFTQELRCFHTVTCYQAVVNNLEDAHEEIDKAISTALKESKPVYISISCNLASTPHPTFIRDPVPFSL-TPRSSNPMGLHAAVEATLDFLNKAVKPVMVAGVKLRVAKASDAFVQLADASGYAMAVMPSAKGLVPENHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYTSVGYSLLLKKEKAILVHPDRVTVANGQTFGCVLMSEFFTELSKRVKRNETAYENYHRIFVPQGKPIACKAREPLRVNTMFQHIQKMLSSQTAVIAETGDS---WFNCQK 441          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|1191001468|ref|XP_020873185.1| (pyruvate decarboxylase 1 [Arabidopsis lyrata subsp. lyrata] >gi|297313041|gb|EFH43464.1| hypothetical protein ARALYDRAFT_491381 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 380.178 bits (975), Expect = 7.837e-124
Identity = 193/405 (47.65%), Postives = 263/405 (64.94%), Query Frame = 0
Query:    5 NTIPSNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNIS----EEHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGG-EYGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            N+  S +G Y+ARRL+  G+ + ++VPGD+NL LLD L+  PEL LI CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSNDY ++RILHHTIG  D  Q++  F  V      + +   A  QID AI TA+ + KPVY+ ++CN++          P+PF +  P+ SN   L AAV+ TL     A KPV+V G K+R+A+A D  ++LADA+G A+A MP AKG+ PE HP +IGTYWG VS+    E VESAD YIF G  FNDY++ GY+ L+KK+  +  + DRV    G  +GCV M++F   LAK + RN+ + + Y RIF PE +     ++  L +  + + +Q +L+ +TA++ ETG     W + QK
Sbjct:   41 NSCDSTIGRYIARRLVQAGVTDIFSVPGDFNLTLLDHLMAEPELNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHEQIDTAISTALKESKPVYISISCNLAAIPHHTFSRAPVPFSL-APRLSNKMGLEAAVEATLEFLNKAVKPVMVGGPKLRVAKACDVFVELADASGYAMAAMPSAKGLVPEHHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYSSVGYSLLLKKEKAIVVHPDRVTVANGPTFGCVQMSDFFRELAKRVKRNETAYENYHRIFVPEGKPLKCESKEPLRVNTMFQHIQKMLSSETAVIAETGDS---WFNCQK 441          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|922425084|ref|XP_013618619.1| (PREDICTED: pyruvate decarboxylase 4 [Brassica oleracea var. oleracea] >gi|923637586|ref|XP_013640124.1| PREDICTED: pyruvate decarboxylase 4 [Brassica napus] >gi|674866978|emb|CDY66930.1| BnaCnng52860D [Brassica napus])

HSP 1 Score: 379.407 bits (973), Expect = 1.565e-123
Identity = 192/401 (47.88%), Postives = 264/401 (65.84%), Query Frame = 0
Query:    9 SNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISE----EHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGE-YGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEARVAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            + +G +LARRL+  G+ + ++VPGD+NL LLD L+  PELK I CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSND+ ++RILHHTIG  D  Q++  F  V      + +   A  QID AI TA+ + KPVY+ ++CN++       +  P+PF +  P+ SN   L AAV+ TL     A KPV+V GVK+R+A+A DA ++LADA+G A+A MP AKG+ PE HP +IGTYWG VS+    E VESAD YIF G  FNDY++ GY+ L+KK+  +  + DRV    G+ +GCV M++F   LAK + RN+ + + Y RIF PE +     A   L +  + + +Q +++ +TA++ ETG     W + QK
Sbjct:   45 ATLGRHLARRLVQAGVTDIFSVPGDFNLTLLDHLIAEPELKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVNNLEDAHEQIDKAISTALKESKPVYISISCNLAATPHPTFIRDPVPFSL-TPRLSNKMGLEAAVEATLEFLNKAVKPVMVGGVKLRVAKASDAFVELADASGYAMAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYSSVGYSLLLKKEKAIVVHPDRVTIANGQTFGCVLMSDFFTELAKRVKRNETAYENYHRIFVPEGKPLKCKAREPLRVNAMFQHIQKMISSETAVIAETGDS---WFNCQK 441          
BLAST of EWM28627.1 vs. NCBI_GenBank
Match: gi|1072910245|ref|XP_018446471.1| (PREDICTED: pyruvate decarboxylase 4 [Raphanus sativus] >gi|1072910247|ref|XP_018446477.1| PREDICTED: pyruvate decarboxylase 4 [Raphanus sativus])

HSP 1 Score: 379.022 bits (972), Expect = 2.242e-123
Identity = 195/402 (48.51%), Postives = 266/402 (66.17%), Query Frame = 0
Query:    9 SNVGTYLARRLINVGIKEYYAVPGDYNLLLLDQLLLFPELKLISCCNELNAGYAADGCARKNGVAAMVVTYTVGGLSAINAIAGAYSDDLPIIFISGAPNSNDYASDRILHHTIGKIDRRQQIDMFSHVVAEAVEIRSPGQAARQIDHAIVTAMTQKKPVYLDVACNISE----EHVSLPIPFQIPPPKPSNAASLRAAVQTTLTQWTHAAKPVIVIGVKVRMAEAFDAVIQLADAAGCAVATMPDAKGMFPEDHPQYIGTYWGPVSSVGAGETVESADMYIFLGSRFNDYNTTGYTCLIKKKGLVTANVDRVETPGGE-YGCVNMAEFAVALAKVIPRNDASIKAYTRIFAPEAR-VAARPAETLLTMRFVHEQVQNLLTPKTALLVETGGKGRYWSDLQK 404
            + +G +LARRL+  G+ + ++VPGD+NL LLD L+  PELK I CCNELNAGYAADG AR  GV A VVT+TVGGLS +NAIAGAYS++LP+I I G PNSND+ ++RILHHTIG  D  Q++  F  V      + +   A  QID AI TA+ + KPVY+ ++CN++       +  PIPF +  P+ SN   L AAV+ TL     A KPV+V GVK+R+A+A DA + LADA+G A+A MP AKG+ PE HP +IGTYWG VS+    E VESAD YIF G  FNDY++ GY+ L+KK+  +  + DRV    G+ +GCV M++F   LAK + RN+ + + Y RIF PE + +  +P E  L +  + + +Q +L+ +TA++ ETG     W + QK
Sbjct:   41 ATLGRHLARRLVQAGVTDIFSVPGDFNLTLLDHLIAEPELKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVNNLEDAHEQIDKAISTALKESKPVYISISCNLAATPHPTFIRDPIPFSL-TPRLSNKMGLEAAVEATLEFLNKAVKPVMVGGVKLRVAKASDAFVDLADASGYAMAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCSEIVESADAYIFAGPIFNDYSSVGYSLLLKKEKAIIVHPDRVTIANGQTFGCVLMSDFFAELAKRVKRNETAYENYHRIFVPEGKPLTCKPKEP-LRVNAMFQHIQKMLSSETAVIAETGDS---WFNCQK 437          
The following BLAST results are available for this feature:
BLAST of EWM28627.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111045|gb|EWM28627.1|0.000e+0100.00pyruvate decarboxylase [Nannochloropsis gaditana][more]
gi|553188824|ref|XP_005854872.1|0.000e+099.24pyruvate decarboxylase [Nannochloropsis gaditana C... [more]
gi|585111044|gb|EWM28626.1|0.000e+0100.00pyruvate decarboxylase [Nannochloropsis gaditana][more]
gi|923926618|ref|XP_013732259.1|4.082e-12548.63PREDICTED: pyruvate decarboxylase 1-like [Brassica... [more]
gi|922557570|ref|XP_013606887.1|4.548e-12548.63PREDICTED: pyruvate decarboxylase 1-like [Brassica... [more]
gi|1072983400|ref|XP_018442241.1|5.366e-12548.63PREDICTED: pyruvate decarboxylase 4-like isoform X... [more]
gi|1072983398|ref|XP_018442240.1|1.007e-12448.63PREDICTED: pyruvate decarboxylase 4-like isoform X... [more]
gi|1191001468|ref|XP_020873185.1|7.837e-12447.65pyruvate decarboxylase 1 [Arabidopsis lyrata subsp... [more]
gi|922425084|ref|XP_013618619.1|1.565e-12347.88PREDICTED: pyruvate decarboxylase 4 [Brassica oler... [more]
gi|1072910245|ref|XP_018446471.1|2.242e-12348.51PREDICTED: pyruvate decarboxylase 4 [Raphanus sati... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2114rna2114Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications