rna2092, rna2092 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2092
Unique Name	rna2092
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1761
Alignment location	CM002458.1:872151..873726 -

Link to JBrowse

Properties


Property Name	Value
Product	enolase
Orig transcript id	gnl\|cribi\|Naga_100009g67.645.mrna
Orig protein id	gnl\|cribi\|Naga_100009g67.645
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:872151..873726 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g67	gene2002	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2092	rna2092-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28602.1	cds2084	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:872151..873726-
coding sequence from alignment at CM002458.1:872151..873726-

mRNA sequence

>rna2092 ID=rna2092|Name=rna2092|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp
ATGTATTCAACACTCCTTCTCGGCGCTGCTCTATTGATTGCCTCACCACC
TTCCCCCTCAGCGCCTTTCCCGTCTCCAGCAGTAAAGCACCTTCACGATT
TCCTCAGGTCATGGACGGCCACTCGCGTCAATCCAGGCCGACTACAATGG
CCCAACTCGCTCATGACACTCACGAAGTGGACTGGAATTGAGCTCACAGA
TCTCAACTTTATGACCGAGCTCTACAGTTGTAACGCAGACGGCAGCAGCA
GCGCATGCTCGACAGGTGGCATTTGGCTTGTGCATGGGTACGCACCATTT
GATGCCACTGCTCAGAGAACAAACGTCCTCATAGAGAAACACCTCACACC
GACACTCTCGCGCGCGCGACAAGATGAACGAAATGATATGACCCGTGTGT
ATGTGAGCAGATTAGACATGACTCGAAATCCACAAGCTGCCAAAAAAATA
TTTTCAATCGACGACGATGCGAGCGTGGGATCCACGCTCATGATACTGCG
ACCCGACTTGGATGACGGTGGTCAAGCCGCGGAATATCGAGGCCCTCGTA
CGCGTCAAGGGATCAAGCACATGCTACAGCTTCTGCAAGCCGGCGAGTCT
CCAATAGTGGCATCGAATGCAGATGTCATGCCTGTAAACATGTTGCAGAC
GCACAAAGAAATCCAGCTCTTCTTGCAAGAGCATCCGCTGGCCTTTGTTT
TGGGAAGGACGGAGGAGGGTGCAGTGACGGAAGAGGAGATCACGTTTCGC
GACACGTGTTTGGCAATGAGTTGGCAGAACTGCGCTGTCGTGCCATCCAA
AAGAGCCCTACTTCGCGCAGCCGTGGCGTCATTGTCCGAGTCATTAGAAG
ATAATCATCAAGGTCCCGTCATTGCAAAGCTCGATCGAGTGCGCGATGCG
CTTTTGTACCGAAACAATGCATCAACATCCTTAGAGGACTGGATGCTGCT
GCACGGCTTTCCTCTCGTCAGTCACCTGGACCTTGACAGTCCCCATTTGG
AGCGGTTCATACTGCCAAAGCCGCAGACACGACAAGAAACAGAAGGGCAT
AAGCACGGGCCGGAGCAAGGGGTGCGCCAGCTTGTGATTGCGACCATACA
ACCTCTGAATGACTCCGATTCAGAAGTTGCGGCTGTTCTGGACGCATTGG
ACAACGCGGCAAGGCATAATCCCGCGGTGCGTTTTGGCTATACAACTGCG
GCGGGACCAAAGGGCTGGTCAGCATTTTTGAATCGACACTTCGCCCTCGA
CGACCATGAGGTAGAGAAGCTGTCGTCGTCAAGGCTCTTTTTTTATGATT
GCCACCAGCGTGCACTTTATGAGGGAGGCACAGGCGCCGAAAATTTGAAG
CTGCTTCTTGAGCAGGTCGAAGAGAGAACGCAGAGTCCGCGTCATCTCAC
ACCGCGGGCTAGGAGCCATGCCGAGGGGCGTGGGGTCAAAGATGATGATG
AAGGCGGAGGAATCAAGACGACGAAAGAAGTAGAATGCGATGAAGGCATG
CCAAAAATAGAATCTGAGGCAAGCTGGCGCCTTGTCCTTCATGCACTGGT
GGCAGCATGCGCGGCCGTTCTGGCACTGACGTTATTGGTCGTAACTTCAT
TGAAGAAGACATTTGCTGGCTTGCTGAAATTGCCGAATCGCTCGATTAAT
GTACTGTTACTTGAGTGCATGGATGTGGCAAGCTGCTCGCTATGCGCTCC
GTATATCTTCCCTTTCGCCACATGGATGCTAAATGATGTTGCACCCCAAT
CCCACTTTTAG

protein sequence of rna2092

>rna2092-protein ID=rna2092-protein|Name=rna2092|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MLFTLSLKKPALAAGRLSAARAASTITAIKGRQIIDSRGNPTVEVDLFTK
DGKFTASVPSGASTGIYEAMELRDGGKAFMGKGVTKAVNNVNTALAKALA
GQDVTQQATLDKMMIELDGTENKSKLGANAILGVSLAAAKAGAAAKQVPL
YKHFGDLAGNTKFVLPVPSFNVINGGSHAGNKLAFQEFMILPTGASTFSE
AMAIGCEVYHHLAKVIKAKYGQDAVNVGDEGGFAPNIQSNTEGVELLMSA
IEKAGYLEKVKLGMDVASSEFLTKDGKYDLDFKNPQGDGKQVLTGPQLAD
MYMELSNKYPIVSIEDPFDQDDWANYTPFTAAIGSKVQVVGDDLLVTNPK
RIKEAAQKKACNALLLKVNQIGSVTESIEAVKDSKKNGWGVMTSHRSGET
EDSYIADLAVGLCTGQIKTGAPCRSERLAKYNQLLRIEEDLGSKAVYAGK
SFRVPAWMA

mRNA from alignment at CM002458.1:872151..873726-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2092 ID=rna2092|Name=rna2092|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp|location=Sequence derived from alignment at CM002458.1:872151..873726- (Nannochloropsis gaditana)
ATGCTTTTCACCCTCTCTCTGAAAAAGCCAGCCCTTGCCGCCGGACGTCT
CTCGGCTGCTCGTGCCGCTTCGACTATCACAGCGATCAAGGGCCGCCAAA
TTATCGACTCTCGCGGGAACCCGACAGTGGAGGTAGACTTGTTCACGAAG
GACGGAAAATTCACAGCTTCTGTACCTTCAGGTGCTTCGACTGGAATTTA
CGAGGCCATGGAGCTCAGAGACGGGGGCAAGGCTTTCATGGGGAAGGGTG
TTACGAAAGCGGTCAATAATGTTAACACCGCCCTCGCAAAGGCCCTGGCC
GGACAAGACGTGACACAGCAGGCAACGCTTGACAAGATGATGATTGAGCT
TGATGGCACGGAGAATAAGAGCAAATTGGGAGCTAATGCGATTCTCGGCG
TGTCTTTGGCCGCCGCCAAGGCAGGTGCTGCTGCAAAACAAGTCCCCCTC
TACAAGCATTTTGGAGACTTGGCGGGCAACACCAAATTTGTACTGCCTGT
TCCTTCTTTCAACGTGATCAACGGGGGTAGCCACGCTGGAAATAAACTGG
CCTTTCAAGAATTCATGATCCTACCCACGGGTGCCTCCACGTTCTCCGAG
GCGATGGCGATCGGTTGCGAAGTGTACCACCACCTGGCGAAGGTCATCAA
AGCTAAGTACGGTCAGGACGCCGTGAACGTCGGGGACGAGGGCGGCTTTG
CACCGAATATCCAGAGCAATACGGAAGGGGTCGAGCTGCTTATGTCCGCC
ATTGAGAAGGCCGGGTACTTGGAGAAGGTCAAGCTCGGCATGGACGTTGC
CTCCTCCGAGTTCCTGACGAAGGATGGAAAGTACGACCTGGACTTCAAGA
ACCCGCAGGGCGATGGGAAACAAGTCTTGACGGGCCCGCAACTTGCGGAT
ATGTACATGGAGCTGTCGAACAAGTACCCCATCGTTTCGATCGAGGACCC
CTTCGACCAGGTAAAAGGGAGAGGGGCGGGGACAATGCCCGCGACAGGGG
GGCTACATCGCAGGCAAACCTTCCGAGAAGGGAACTGTGTCCTCGGAGCA
ATCGACCCGTGGGGGCTCGAGTGCATTTGATTCCCGATATTCTCTTCTCC
CCTGCTGTTTAGTCGTCGTTCTCACTCGCCCGAACCCGCTCGTTCCCTGC
TCCTAGGACGACTGGGCGAACTACACCCCCTTCACGGCCGCCATAGGCAG
CAAGGTTCAGGTCGTGGGGGACGACTTGCTCGTGACCAACCCGAAGCGCA
TCAAGGAAGCGGCGCAGAAGAAGGCTTGCAACGCCCTCCTTCTCAAAGTG
AACCAGATCGGGTCGGTCACTGAATCTATCGAGGCGGTGAAGGACTCTAA
GAAGAACGGATGGGGCGTGATGACTTCCCACCGATCTGGGGAGACGGAGG
ATAGCTACATTGCCGATCTGGCCGTGGGGCTGTGCACTGGGCAGATCAAA
ACAGGGGCTCCCTGCCGGTCTGAACGCCTTGCCAAGTACAACCAACTGCT
GCGTATAGAAGAGGACCTGGGAAGCAAGGCTGTGTACGCTGGGAAGTCCT
TTCGAGTGCCTGCCTGGATGGCTTGA

Coding sequence (CDS) from alignment at CM002458.1:872151..873726-

>rna2092 ID=rna2092|Name=rna2092|organism=Nannochloropsis gaditana|type=CDS|length=2760bp|location=Sequence derived from alignment at CM002458.1:872151..873726- (Nannochloropsis gaditana)
GACGACTGGGCGAACTACACCCCCTTCACGGCCGCCATAGGCAGCAAGGT
TCAGGTCGTGGGGGACGACTTGCTCGTGACCAACCCGAAGCGCATCAAGG
AAGCGGCGCAGAAGAAGGCTTGCAACGCCCTCCTTCTCAAAGTGAACCAG
ATCGGGTCGGTCACTGAATCTATCGAGGCGGTGAAGGACTCTAAGAAGAA
CGGATGGGGCGTGATGACTTCCCACCGATCTGGGGAGACGGAGGATAGCT
ACATTGCCGATCTGGCCGTGGGGCTGTGCACTGGGCAGATCAAAACAGGG
GCTCCCTGCCGGTCTGAACGCCTTGCCAAGTACAACCAACTGCTGCGTAT
AGAAGAGGACCTGGGAAGCAAGGCTGTGTACGCTGGGAAGTCCTTTCGAG
TGCCTGCCTGGATGGCTTGAATGCTTTTCACCCTCTCTCTGAAAAAGCCA
GCCCTTGCCGCCGGACGTCTCTCGGCTGCTCGTGCCGCTTCGACTATCAC
AGCGATCAAGGGCCGCCAAATTATCGACTCTCGCGGGAACCCGACAGTGG
AGGTAGACTTGTTCACGAAGGACGGAAAATTCACAGCTTCTGTACCTTCA
GGTGCTTCGACTGGAATTTACGAGGCCATGGAGCTCAGAGACGGGGGCAA
GGCTTTCATGGGGAAGGGTGTTACGAAAGCGGTCAATAATGTTAACACCG
CCCTCGCAAAGGCCCTGGCCGGACAAGACGTGACACAGCAGGCAACGCTT
GACAAGATGATGATTGAGCTTGATGGCACGGAGAATAAGAGCAAATTGGG
AGCTAATGCGATTCTCGGCGTGTCTTTGGCCGCCGCCAAGGCAGGTGCTG
CTGCAAAACAAGTCCCCCTCTACAAGCATTTTGGAGACTTGGCGGGCAAC
ACCAAATTTGTACTGCCTGTTCCTTCTTTCAACGTGATCAACGGGGGTAG
CCACGCTGGAAATAAACTGGCCTTTCAAGAATTCATGATCCTACCCACGG
GTGCCTCCACGTTCTCCGAGGCGATGGCGATCGGTTGCGAAGTGTACCAC
CACCTGGCGAAGGTCATCAAAGCTAAGTACGGTCAGGACGCCGTGAACGT
CGGGGACGAGGGCGGCTTTGCACCGAATATCCAGAGCAATACGGAAGGGG
TCGAGCTGCTTATGTCCGCCATTGAGAAGGCCGGGTACTTGGAGAAGGTC
AAGCTCGGCATGGACGTTGCCTCCTCCGAGTTCCTGACGAAGGATGGAAA
GTACGACCTGGACTTCAAGAACCCGCAGGGCGATGGGAAACAAGTCTTGA
CGGGCCCGCAACTTGCGGATATGTACATGGAGCTGTCGAACAAGTACCCC
ATCGTTTCGATCGAGGACCCCTTCGACCAGGACGACTGGGCGAACTACAC
CCCCTTCACGGCCGCCATAGGCAGCAAGGTTCAGGTCGTGGGGGACGACT
TGCTCGTGACCAACCCGAAGCGCATCAAGGAAGCGGCGCAGAAGAAGGCT
TGCAACGCCCTCCTTCTCAAAGTGAACCAGATCGGGTCGGTCACTGAATC
TATCGAGGCGGTGAAGGACTCTAAGAAGAACGGATGGGGCGTGATGACTT
CCCACCGATCTGGGGAGACGGAGGATAGCTACATTGCCGATCTGGCCGTG
GGGCTGTGCACTGGGCAGATCAAAACAGGGGCTCCCTGCCGGTCTGAACG
CCTTGCCAAGTACAACCAACTGCTGCGTATAGAAGAGGACCTGGGAAGCA
AGGCTGTGTACGCTGGGAAGTCCTTTCGAGTGCCTGCCTGGATGGCTTGA
ATGCTTTTCACCCTCTCTCTGAAAAAGCCAGCCCTTGCCGCCGGACGTCT
CTCGGCTGCTCGTGCCGCTTCGACTATCACAGCGATCAAGGGCCGCCAAA
TTATCGACTCTCGCGGGAACCCGACAGTGGAGGTAGACTTGTTCACGAAG
GACGGAAAATTCACAGCTTCTGTACCTTCAGGTGCTTCGACTGGAATTTA
CGAGGCCATGGAGCTCAGAGACGGGGGCAAGGCTTTCATGGGGAAGGGTG
TTACGAAAGCGGTCAATAATGTTAACACCGCCCTCGCAAAGGCCCTGGCC
GGACAAGACGTGACACAGCAGGCAACGCTTGACAAGATGATGATTGAGCT
TGATGGCACGGAGAATAAGAGCAAATTGGGAGCTAATGCGATTCTCGGCG
TGTCTTTGGCCGCCGCCAAGGCAGGTGCTGCTGCAAAACAAGTCCCCCTC
TACAAGCATTTTGGAGACTTGGCGGGCAACACCAAATTTGTACTGCCTGT
TCCTTCTTTCAACGTGATCAACGGGGGTAGCCACGCTGGAAATAAACTGG
CCTTTCAAGAATTCATGATCCTACCCACGGGTGCCTCCACGTTCTCCGAG
GCGATGGCGATCGGTTGCGAAGTGTACCACCACCTGGCGAAGGTCATCAA
AGCTAAGTACGGTCAGGACGCCGTGAACGTCGGGGACGAGGGCGGCTTTG
CACCGAATATCCAGAGCAATACGGAAGGGGTCGAGCTGCTTATGTCCGCC
ATTGAGAAGGCCGGGTACTTGGAGAAGGTCAAGCTCGGCATGGACGTTGC
CTCCTCCGAGTTCCTGACGAAGGATGGAAAGTACGACCTGGACTTCAAGA
ACCCGCAGGGCGATGGGAAACAAGTCTTGACGGGCCCGCAACTTGCGGAT
ATGTACATGGAGCTGTCGAACAAGTACCCCATCGTTTCGATCGAGGACCC
CTTCGACCAG

Synonyms

Publications