rna2091, rna2091 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2091
Unique Name	rna2091
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2445
Alignment location	CM002458.1:869845..871723 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100009g68.666.mrna
Orig protein id	gnl\|cribi\|Naga_100009g68.666
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:869845..871723 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g68	gene2001	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2091	rna2091-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28623.1	cds2083	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:869845..871723+
coding sequence from alignment at CM002458.1:869845..871723+

mRNA sequence

>rna2091 ID=rna2091|Name=rna2091|organism=Nannochloropsis gaditana|type=mRNA|length=2445bp
ATCGTCAGCTTGCTCAGGGACGTGGTTCAAGACACAATGTACCGACGACC
GCGTTAACCTTCCTTTCAACCTGGTCATGATACTCCCTGCAGGTGACTCG
GGAAGTTGAGTCAGTAGACAGCATCATCTCCCCGTCGCTACCTCTCCCGC
GCCTTTGTCGCACGGCATGCTGCAGCCCGCTAGAGGGGAATGAGAGAGGA
ATTTCAGGTCTATCACCATCTCACCCTCTTCGCAGCAGCTGCTGCAAGAG
ACAAAGAGCTGCCATTTCAGCCGCAGCAACTGGAGTAGTGTCACTTGGGT
GCGCCAGCAAATTTGCAAATAAGAGCCTTCTACGCTACACCGCCTTGTCA
CTACGCGGTCTTTGAGGTGCGGCTGGCAAGACAAGAAAGAGCATGCCTGC
CATCCAGCCTGCCGACTACAAGGCAGCCAAAGAAGCATTTGTCTCAAATT
TGAACGGCTCCGGCTTGTATGAGATCATTAAAGTCACCATCCCCCTGCCC
GTGGCTCTTTGGGCATACACGGAATTGCGAGCCTTCCGCCTGGTCTATTC
AGCTCCTACCCCTGGACTTTTGCTTGCATTTTGCTACGAATTCGCTGTTC
TGATATTTCCTCAAATTTTAGCCCAATGTTGGCCTGAATCGACACCGTGG
GTGCTCGCGGGGCTGTTGGTCATTGGTGTGAGTTGTCGTGCCGTCGTGCA
GGCGACTCGGGAGCCGTCCTTGAAGAGCCAATGGCGCCACGACCGAGCGG
TCCGTCTCGTTTCTTCCCAAGCCCGTAATTTCCTGATAAATTACCGGGCA
GGAGTGATGTTGACCTCCGCCATTGCGATCCTGGCGGTGGACTTCACCAT
CTTCCCGCGGCGTTTCGGGAAGACGGAGACCTTTGGCACGAGCCTGATGG
ACCTGGGCGTCGGCTGTTTCATTTTTTCCAGCGGATTTTGCTCACGGGCA
GCACGACTTTTTCACCATCACAGCGAAGCGGCCCCAGGGGCGGCGGCTGC
TGCGGGCGTGAGCGGGGTAGTGTGCACGGGGGGTGAGGGCAGCGGGTCAG
AGGCCAAGGAGGCTCAAGGCGGTTGGAGTCTAGGGAGAGGCGACCGGGGG
GGATGCGGCACACCCACAAGTAGCAAGGGCGGCGAGTTATTCCGTTTCTC
CAAGCGAGCGGCAATGTGGCGGACGACCAAGCGCTGCATTCCCCTTGTTC
TCCTCGGTCTGGGCAGGCTCCTGGCGCGCCGCTCCGTCGATTACCAAGAG
CATGTGAGCGAGTATGGCGTGCACTGGAACTTCTTCCTCACTCTCGCCGT
CATCCAGCTGGCGACCTCGGCACTCCACACAGTCTTTCCCCACAAGGCGC
TCTCTCCCCTGGCCCTGATCGTCCTGGTCCTCTACCAGATGCAGTTGTCG
GTGAACGGCCTGACCGAATACATGTTCACAGCGCCGAGGGAGGGGAGCCT
CATCGCACAGAATCGGGAAGGTATCTTGGGTGTGATTGGCTTTCTGTGTC
TCTACCTGATAGGGGAGCAGATCGGGACCTGGACGGTATGGGCGATGGGC
GTAGTGGGCGGAGGGACAAAGATTACGGAGGCGGAAGCGAAGCGTGCTCT
GCTACAGCTCGTCGTCTTGGACGCGGGGCTCTGGGGGGCGACGGCGCTGT
CTTGCACACTGGTCCAACCGATATCCCGCCGCCTGGTTAATATGTCCTAC
GTCTTGATGTCCTCCGCCTACAACGTGATGGTGATTGCGTTACTCTTGGC
TGTGGACAGGTTTGCCTCCATGGCGGCCACGTCCCGTCTCCTGTTCGCAG
TGAACAGAAATCAGCTCGCTTTCTTCATCCTGGCAAACCTGCTCACAGGG
GGGGTGAATTTGTCCATGCACACTATTTACGCCTCACCATTCGTATCCTG
GGTGGTAATTTCCTCTTACACGTTGGTTTTACTGGCAATGTTTGTCATGC
TGGATCGGGCCTTTGACGTGACACTCAAATTTTGGTAGCGGGTCGTGCTT
ATCAACAGCAATGTAGGGCAGTGTGAGTCGAGAATTCGATATTTTTCGAA
AGCTTGTTATTTTTTATGCAGGGGTCAAGCTTTGCCCGCCGATAAATAAC
GCGAAGTACTTCCATGTGCATAGGGAGAGGGAGGAGCAGATCAAGGCATT
ACTAAATTAATCACAGCGGGTTGCTGGTTCTTTCTGTAAATAGAAGTACA
TATAATTTCTTGAGGATCGAAATATGAAGATTTCAAGAGGATGAATTATA
GTAAAAATCCCCTCAAGAAACCGGTCCAGCGGGGGAACGAAAAACGGGAG
GATGATGGAATGGACAAAACATATTCGGTTTTGCGATTTCTTTAGGAAAA
TTTTTATACACCTTCCTTAATGCCAAGGTCTTTTGTATTGTTGTCAGCAT
TTCTAGCAAGTTTGACGTTGAAAAAAAGTTTTGCTTCATCTCTTC

protein sequence of rna2091

>rna2091-protein ID=rna2091-protein|Name=rna2091|organism=Nannochloropsis gaditana|type=polypeptide|length=586bp
MYSTLLLGAALLIASPPSPSAPFPSPAVKHLHDFLRSWTATRVNPGRLQW
PNSLMTLTKWTGIELTDLNFMTELYSCNADGSSSACSTGGIWLVHGYAPF
DATAQRTNVLIEKHLTPTLSRARQDERNDMTRVYVSRLDMTRNPQAAKKI
FSIDDDASVGSTLMILRPDLDDGGQAAEYRGPRTRQGIKHMLQLLQAGES
PIVASNADVMPVNMLQTHKEIQLFLQEHPLAFVLGRTEEGAVTEEEITFR
DTCLAMSWQNCAVVPSKRALLRAAVASLSESLEDNHQGPVIAKLDRVRDA
LLYRNNASTSLEDWMLLHGFPLVSHLDLDSPHLERFILPKPQTRQETEGH
KHGPEQGVRQLVIATIQPLNDSDSEVAAVLDALDNAARHNPAVRFGYTTA
AGPKGWSAFLNRHFALDDHEVEKLSSSRLFFYDCHQRALYEGGTGAENLK
LLLEQVEERTQSPRHLTPRARSHAEGRGVKDDDEGGGIKTTKEVECDEGM
PKIESEASWRLVLHALVAACAAVLALTLLVVTSLKKTFAGLLKLPNRSIN
VLLLECMDVASCSLCAPYIFPFATWMLNDVAPQSHF

mRNA from alignment at CM002458.1:869845..871723+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2091 ID=rna2091|Name=rna2091|organism=Nannochloropsis gaditana|type=mRNA|length=1879bp|location=Sequence derived from alignment at CM002458.1:869845..871723+ (Nannochloropsis gaditana)
ATGTATTCAACACTCCTTCTCGGCGCTGCTCTATTGATTGcctcaccacc
ttccccctcagcgCCTTTCCCGTCTCCAGCAGTAAAGCACCTTCACGATT
TCCTCAGGTCATGGACGGCCACTCGCGTCAATCCAGGCCGACTACAATGG
CCCAACTCGCTCATGACACTCACGAAGTGGACTGGAATTGAGCTCACAGA
TCTCAACTTTATGACCGAGCTCTACAGTTGTAACGCagacggcagcagca
gcgcatGCTCGACAGGTGGCATTTGGCTTGTGCATGGGTACGCACCATTT
GATGCCACTGCTCAGAGAACAAACGTCCTCATAGAGAAACACCTCACACC
GACACTCTCGCGCGCGCGACAAGATGAACGAAATGATATGACCCGTGTGT
ATGTGAGCAGATTAGACATGACTCGAAATCCACAAGCTgccaaaaaaata
ttttcaATCGACGACGATGCGAGCGTGGGATCCACGCTCATGATACTGCG
ACCCGACTTGGATGACGGTGGTCAAGCCGCGGAATATCGAGGCCCTCGTA
CGCGTCAAGGGATCAAGCACATGCTACAGCTTCTGCAAGCCGGCGAGTCT
CCAATAGTGGCATCGAATGCAGATGTCATGCCTGTAAACATGTTGCAGAC
GCACAAAGAAATCCAGCTCTTCTTGCAAGAGCATCCGCTGGCCTTTGTtt
tgggaaggacggaggagggtgcagtgacggaagaggagatcaCGTTTCGC
GACACGTGTTTGGCAATGAGTTGGCAGAACTGCGCTGTCGTGCCATCCAA
AAGAGCCCTACTTCGCGCAGCCGTGGCGTCATTGTCCGAGTCATTAGAAG
ATAATCATCAAGGTCCCGTCATTGCAAAGCTCGATCGAGTGCGCGATGCG
CTTTTGTACCGAAACAATGCATCAACATCCTTAGAGGACTGGATGCTGCT
GCACGGCTTTCCTCTCGTCAGTCACCTGGACCTTGACAGTCCCCATTTGG
AGCGGTTCATACTGCCAAAGCCGCAGACACGACAAGAAACAGAAGGGCAT
AAGCACGGGCCGGAGCAAGGGGTGCGCCAGCTTGTGATTGCGACCATACA
ACCTCTGAATGACTCCGATTCAGAAGTTGCGGCTGTTCTGGACGCATTGG
ACAACGCGGCAAGGCATAATCCCGCGGTGCGTTTTGGCTATACAACTGCG
GCGGGACCAAAGGGCTGGTCAGCATTTTTGAATCGACACTTCGCCCTCGA
CGACCATGAGGTAGAGAAGCTGTCGTCGTCAAGGCTCTTTTTTTATGATT
GCCACCAGCGTGCACTTTATGAGGGAGGCACAGGCGCCGAAAATTTGAAG
CTGCTTCTTGAGCAGGTCGAAGAGAGAACGCAGAGTCCGCGTCATCTCAC
ACCGCGGGCTAGGAGCCATGCCGAGGGGCGTGGGGTCAaagatgatgatg
aaggcggaggaatcAAGACGACGAAAGAAGTAGAATGCGATGAAGGCATG
CCAAAAATAGAATCTGAGGCAAGCTGGCGCCTTGTCCTTCATGCACTGGT
GGCAGCATGCGCGGCCGTTCTGGCACTGACGTTATTGGTCGTAACTTCAT
TGAAGAAGACATTTGCTGGTGCAGGCGCGTCAGTCAAGGCAGCAGAGGtc
aagcaggaagaggaaaccgTAGCGACGCAGGATTTGCCGCAGACGAAGAC
CTCGGCAATGAAGGATGCGAACTCACGAAAGATGAGGCTTGCTGAAATTG
CCGAATCGCTCGATTAATGTACTGTTACTTGAGTGCATGGATGTGGCAAG
CTGCTCGCTATGCGCTCCGTATATCTTCCCTTTCGCCACATGGATGCTAA
ATGATGTTGCACCCCAATCCCACTTTTAG

Coding sequence (CDS) from alignment at CM002458.1:869845..871723+

>rna2091 ID=rna2091|Name=rna2091|organism=Nannochloropsis gaditana|type=CDS|length=3522bp|location=Sequence derived from alignment at CM002458.1:869845..871723+ (Nannochloropsis gaditana)
ATGTATTCAACACTCCTTCTCGGCGCTGCTCTATTGATTGcctcaccacc
ttccccctcagcgCCTTTCCCGTCTCCAGCAGTAAAGCACCTTCACGATT
TCCTCAGGTCATGGACGGCCACTCGCGTCAATCCAGGCCGACTACAATGG
CCCAACTCGCTCATGACACTCACGAAGTGGACTGGAATTGAGCTCACAGA
TCTCAACTTTATGACCGAGCTCTACAGTTGTAACGCagacggcagcagca
gcgcatGCTCGACAGGTGGCATTTGGCTTGTGCATGGGTACGCACCATTT
GATGCCACTGCTCAGAGAACAAACGTCCTCATAGAGAAACACCTCACACC
GACACTCTCGCGCGCGCGACAAGATGAACGAAATGATATGACCCGTGTGT
ATGTGAGCAGATTAGACATGACTCGAAATCCACAAGCTgccaaaaaaata
ttttcaATCGACGACGATGCGAGCGTGGGATCCACGCTCATGATACTGCG
ACCCGACTTGGATGACGGTGGTCAAGCCGCGGAATATCGAGGCCCTCGTA
CGCGTCAAGGGATCAAGCACATGCTACAGCTTCTGCAAGCCGGCGAGTCT
CCAATAGTGGCATCGAATGCAGATGTCATGCCTGTAAACATGTTGCAGAC
GCACAAAGAAATCCAGCTCTTCTTGCAAGAGCATCCGCTGGCCTTTGTtt
tgggaaggacggaggagggtgcagtgacggaagaggagatcaCGTTTCGC
GACACGTGTTTGGCAATGAGTTGGCAGAACTGCGCTGTCGTGCCATCCAA
AAGAGCCCTACTTCGCGCAGCCGTGGCGTCATTGTCCGAGTCATTAGAAG
ATAATCATCAAGGTCCCGTCATTGCAAAGCTCGATCGAGTGCGCGATGCG
CTTTTGTACCGAAACAATGCATCAACATCCTTAGAGGACTGGATGCTGCT
GCACGGCTTTCCTCTCGTCAGTCACCTGGACCTTGACAGTCCCCATTTGG
AGCGGTTCATACTGCCAAAGCCGCAGACACGACAAGAAACAGAAGGGCAT
AAGCACGGGCCGGAGCAAGGGGTGCGCCAGCTTGTGATTGCGACCATACA
ACCTCTGAATGACTCCGATTCAGAAGTTGCGGCTGTTCTGGACGCATTGG
ACAACGCGGCAAGGCATAATCCCGCGGTGCGTTTTGGCTATACAACTGCG
GCGGGACCAAAGGGCTGGTCAGCATTTTTGAATCGACACTTCGCCCTCGA
CGACCATGAGGTAGAGAAGCTGTCGTCGTCAAGGCTCTTTTTTTATGATT
GCCACCAGCGTGCACTTTATGAGGGAGGCACAGGCGCCGAAAATTTGAAG
CTGCTTCTTGAGCAGGTCGAAGAGAGAACGCAGAGTCCGCGTCATCTCAC
ACCGCGGGCTAGGAGCCATGCCGAGGGGCGTGGGGTCAaagatgatgatg
aaggcggaggaatcAAGACGACGAAAGAAGTAGAATGCGATGAAGGCATG
CCAAAAATAGAATCTGAGGCAAGCTGGCGCCTTGTCCTTCATGCACTGGT
GGCAGCATGCGCGGCCGTTCTGGCACTGACGTTATTGGTCGTAACTTCAT
TGAAGAAGACATTTGCTGGCTTGCTGAAATTGCCGAATCGCTCGATTAAT
GTACTGTTACTTGAGTGCATGGATGTGGCAAGCTGCTCGCTATGCGCTCC
GTATATCTTCCCTTTCGCCACATGGATGCTAAATGATGTTGCACCCCAAT
CCCACTTTTAGATGTATTCAACACTCCTTCTCGGCGCTGCTCTATTGATT
GcctcaccaccttccccctcagcgCCTTTCCCGTCTCCAGCAGTAAAGCA
CCTTCACGATTTCCTCAGGTCATGGACGGCCACTCGCGTCAATCCAGGCC
GACTACAATGGCCCAACTCGCTCATGACACTCACGAAGTGGACTGGAATT
GAGCTCACAGATCTCAACTTTATGACCGAGCTCTACAGTTGTAACGCaga
cggcagcagcagcgcatGCTCGACAGGTGGCATTTGGCTTGTGCATGGGT
ACGCACCATTTGATGCCACTGCTCAGAGAACAAACGTCCTCATAGAGAAA
CACCTCACACCGACACTCTCGCGCGCGCGACAAGATGAACGAAATGATAT
GACCCGTGTGTATGTGAGCAGATTAGACATGACTCGAAATCCACAAGCTg
ccaaaaaaatattttcaATCGACGACGATGCGAGCGTGGGATCCACGCTC
ATGATACTGCGACCCGACTTGGATGACGGTGGTCAAGCCGCGGAATATCG
AGGCCCTCGTACGCGTCAAGGGATCAAGCACATGCTACAGCTTCTGCAAG
CCGGCGAGTCTCCAATAGTGGCATCGAATGCAGATGTCATGCCTGTAAAC
ATGTTGCAGACGCACAAAGAAATCCAGCTCTTCTTGCAAGAGCATCCGCT
GGCCTTTGTtttgggaaggacggaggagggtgcagtgacggaagaggaga
tcaCGTTTCGCGACACGTGTTTGGCAATGAGTTGGCAGAACTGCGCTGTC
GTGCCATCCAAAAGAGCCCTACTTCGCGCAGCCGTGGCGTCATTGTCCGA
GTCATTAGAAGATAATCATCAAGGTCCCGTCATTGCAAAGCTCGATCGAG
TGCGCGATGCGCTTTTGTACCGAAACAATGCATCAACATCCTTAGAGGAC
TGGATGCTGCTGCACGGCTTTCCTCTCGTCAGTCACCTGGACCTTGACAG
TCCCCATTTGGAGCGGTTCATACTGCCAAAGCCGCAGACACGACAAGAAA
CAGAAGGGCATAAGCACGGGCCGGAGCAAGGGGTGCGCCAGCTTGTGATT
GCGACCATACAACCTCTGAATGACTCCGATTCAGAAGTTGCGGCTGTTCT
GGACGCATTGGACAACGCGGCAAGGCATAATCCCGCGGTGCGTTTTGGCT
ATACAACTGCGGCGGGACCAAAGGGCTGGTCAGCATTTTTGAATCGACAC
TTCGCCCTCGACGACCATGAGGTAGAGAAGCTGTCGTCGTCAAGGCTCTT
TTTTTATGATTGCCACCAGCGTGCACTTTATGAGGGAGGCACAGGCGCCG
AAAATTTGAAGCTGCTTCTTGAGCAGGTCGAAGAGAGAACGCAGAGTCCG
CGTCATCTCACACCGCGGGCTAGGAGCCATGCCGAGGGGCGTGGGGTCAa
agatgatgatgaaggcggaggaatcAAGACGACGAAAGAAGTAGAATGCG
ATGAAGGCATGCCAAAAATAGAATCTGAGGCAAGCTGGCGCCTTGTCCTT
CATGCACTGGTGGCAGCATGCGCGGCCGTTCTGGCACTGACGTTATTGGT
CGTAACTTCATTGAAGAAGACATTTGCTGGCTTGCTGAAATTGCCGAATC
GCTCGATTAATGTACTGTTACTTGAGTGCATGGATGTGGCAAGCTGCTCG
CTATGCGCTCCGTATATCTTCCCTTTCGCCACATGGATGCTAAATGATGT
TGCACCCCAATCCCACTTTTAG

Synonyms

Publications