rna2058, rna2058 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2058
Unique Name	rna2058
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	231
Alignment location	CM002458.1:789959..792209 -

Link to JBrowse

Properties


Property Name	Value
Product	threonine aldolase
Orig transcript id	gnl\|cribi\|Naga_100009g106.590.mrna
Orig protein id	gnl\|cribi\|Naga_100009g106.590
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:789959..792209 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g106	gene1969	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2058	rna2058-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28547.1	cds2050	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:789959..792209-
coding sequence from alignment at CM002458.1:789959..792209-

mRNA sequence

>rna2058 ID=rna2058|Name=rna2058|organism=Nannochloropsis gaditana|type=mRNA|length=231bp
ATGCAATATAGGTCAAAGCACAGTCTTTTAATCCTAGGCAACGGGGAGGA
AGAAGATGCCATGTACAGACATGTACAGAATGGGGGAAGGGAGATAGAGG
GGCATAGCACGCGAAGGAAAGGAGCGATGGAAAGGCACGCTGAGGGAGAG
TGTAGGCTGTTTGTCGACTGCGAGGGCATGCCTTGGATCCCGGAGGCTCC
GCTTTGTCCCGGAAAGCATCTGATCATTTAA

protein sequence of rna2058

>rna2058-protein ID=rna2058-protein|Name=rna2058|organism=Nannochloropsis gaditana|type=polypeptide|length=433bp
MIRRSGSCTSFRGEGDIMKDDMYRGTLSRSVRSPKMAFAFRRTGNSCGNW
GLRTTFRRSLTSSENEFRKPVELRSDTFTRPCDGMRKAMYNAEVGDVCYN
EDKTVQRLEEAVAGLLGKEAGMFAASGTMTNLLALAAHCKRGDEILLGHQ
NHIYNYEGGGASALLGVAFHPVATLGDGTNRLSDLREAIRDDDFHFARTS
LVAVETTHNKANGSPLPPSFMAEVGALCREHQLVFHVDGARLMNASVALE
MPASEIVREADSVSLCLSKGLGAPIGSVLVGTHAIIKEAKRQRKVLGGGW
RQAGSLAAAGLYALEHNVPMLERDHHNAQALATGFSQIPGVVCDPSCVST
NIVYFRVLGLPAGEVVRRLKEQYNVLLGIGAYRGDRLRAVTNLMVTEEDI
ARTVRAVAEIVGRTNREKVDRACAGFKETAVAG

mRNA from alignment at CM002458.1:789959..792209-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2058 ID=rna2058|Name=rna2058|organism=Nannochloropsis gaditana|type=mRNA|length=2251bp|location=Sequence derived from alignment at CM002458.1:789959..792209- (Nannochloropsis gaditana)
ATGATTCGACGTAGTGGATCGTGCACAAGCTTCAGAGGGGAGGGTGATAT
TATGAAAGATGACATGTACAGGGGTACTCTATCTAGATCTGTGTGCCTTA
AAGAAAAAAAGCAATAGCGCAACTTGCTGCATTGCCCGTAGAGGAGAATG
GCCCAGGGAACGATCACACATATGGGCAAACGAAGGTTTGGAATGCTTTA
CTGGTTCCTAGCTCGATCATTCATATTTTGTTGCTGAGAAACATATGACT
TACTAAAATCTTACACATATCATTGGTTTTTTGTCCTCCCGAGTGGAACG
GCATCTTGACTCTGTCCATTACAAGAGGAAACATTTATCCTTTTCAGTCT
CGCATATTCGAAGGCGTCTAATTTTCTGTGTGGTACAAGGTCTTCTCCTC
TTTCGTGTGATTATGCGCCTTTGGAAAAGTAGAACGAGTGGGGCGAGTCA
TTTCAACATACGAAAACTTCATGAGCACGCATTCTCGTGTATGAGAGGGG
CACCACACGATAAGCTTGTCCACCTCTATGTAGGGCATCAAGCATGCACA
TATATGCGAAGAAAAGGCATTACGTGGCCCTCACTGTCTTTTGAGGCTCG
AATTTCTTTTCTTCAAGCGTGTGACGTACCACTTTCCCGGCAGGGGGGAG
GGTCGTAACTTCCGTGCCAGGATGGCCAGCTCCAACCCTTTGCCAGCAAT
TTATAAAGTTTTGCCTCTCATGGGGAATGAATGAGTATTTTACACAGCGA
TTGTCGGGCGGTCAACTGTGTGCTTGTTTACCCGTGGACTGCCATACTTT
TCGCTCCGACATGTTGACTACATTTCTTGACAGGAGGAGTCCTAAGATGG
CGTTCGCTTTTCGCCGCACGGGAAATTCCTGCGGTAATTGGGGTTTGCGG
ACCACCTTCCGACGAAGCTTGACGTCGTCCGAAAATGAATTTAGAAAACC
TGGTGAGTGGACTCCTATTGTCTTTGCTGCCATGCGTGCGGACGCTAGGC
CATATCCCCTCAAAACTCCGCCCTTTGCTTGAGACCTGTGTCAGAGCGTC
GACTTGCAAAAAAAGACTTTTTAAGCCGACAGAAGGACATTTTGGATTTC
AAAAAGGGCTTTTTTGGTTGCATTGGTTCCTTATGCGTTCAGTCCTTGTG
TACCGTACAGTTGAGCTTCGCTCCGACACCTTCACGCGTCCATGCGACGG
GATGCGCAAAGCCATGTATAATGCCGAGGTAGGTGACGTCTGTTACAACG
AGGACAAAACTGTGCAGCGTCTGGAGGAGGCAGTGGCTGGGCTCCTCGGA
AAAGAAGCTGGCATGTTCGCGGCGTCGGGCACGATGACGAATCTGCTGGC
CTTGGCGGCGCACTGCAAGCGTGGGGACGAGATCCTCCTGGGGCACCAGA
ACCACATTTACAACTACGAAGGAGGGGGTGCGTCGGCCCTCCTCGGCGTG
GCCTTTCATCCGGTCGCCACGTTAGGGGATGGGACAAACCGCTTGAGCGA
CCTGCGCGAGGCCATCCGTGACGACGATTTCCACTTCGCGCGCACCTCCT
TAGTAGCCGTGGAGACCACGCACAACAAGGCAAATGGGTCGCCCTTGCCG
CCGTCCTTCATGGCAGAGGTAGGTGCACTTTGTCGCGAGCACCAGCTCGT
CTTCCACGTGGATGGGGCGCGTTTGATGAACGCCTCCGTGGCCCTGGAGA
TGCCCGCCTCGGAGATCGTGCGGGAGGCGGACTCCGTGTCCCTTTGTCTT
AGCAAGGGCCTGGGCGCACCAATCGGCTCCGTGCTGGTGGGCACGCACGC
AATCATTAAGGAGGCGAAGCGCCAAAGAAAAGTCCTGGGGGGTGGCTGGC
GGCAGGCGGGGTCTCTGGCAGCTGCGGGGTTGTACGCTCTGGAGCACAAT
GTACCCATGCTCGAGCGAGACCATCACAACGCGCAGGCCTTGGCCACGGG
CTTCAGCCAGATCCCAGGCGTCGTTTGCGACCCATCGTGCGTCTCCACCA
ACATCGTCTACTTCCGCGTCCTGGGCCTGCCCGCGGGGGAGGTGGTGCGG
CGTTTGAAGGAGCAGTACAACGTCCTTTTGGGCATTGGGGCCTATCGAGG
AGACAGGCTCCGCGCCGTCACGAACCTGATGGTGACCGAGGAGGACATCG
CCCGGACGGTCAGGGCCGTGGCGGAGATCGTAGGCAGGACGAACCGGGAG
AAGGTAGACCGGGCCTGCGCGGGCTTCAAAGAGACTGCGGTGGCAGGGTG
A

Coding sequence (CDS) from alignment at CM002458.1:789959..792209-

>rna2058 ID=rna2058|Name=rna2058|organism=Nannochloropsis gaditana|type=CDS|length=3906bp|location=Sequence derived from alignment at CM002458.1:789959..792209- (Nannochloropsis gaditana)
TTGAGCTTCGCTCCGACACCTTCACGCGTCCATGCGACGGGATGCGCAAA
GCCATGTATAATGCCGAGGTAGGTGACGTCTGTTACAACGAGGACAAAAC
TGTGCAGCGTCTGGAGGAGGCAGTGGCTGGGCTCCTCGGAAAAGAAGCTG
GCATGTTCGCGGCGTCGGGCACGATGACGAATCTGCTGGCCTTGGCGGCG
CACTGCAAGCGTGGGGACGAGATCCTCCTGGGGCACCAGAACCACATTTA
CAACTACGAAGGAGGGGGTGCGTCGGCCCTCCTCGGCGTGGCCTTTCATC
CGGTCGCCACGTTAGGGGATGGGACAAACCGCTTGAGCGACCTGCGCGAG
GCCATCCGTGACGACGATTTCCACTTCGCGCGCACCTCCTTAGTAGCCGT
GGAGACCACGCACAACAAGGCAAATGGGTCGCCCTTGCCGCCGTCCTTCA
TGGCAGAGGTAGGTGCACTTTGTCGCGAGCACCAGCTCGTCTTCCACGTG
GATGGGGCGCGTTTGATGAACGCCTCCGTGGCCCTGGAGATGCCCGCCTC
GGAGATCGTGCGGGAGGCGGACTCCGTGTCCCTTTGTCTTAGCAAGGGCC
TGGGCGCACCAATCGGCTCCGTGCTGGTGGGCACGCACGCAATCATTAAG
GAGGCGAAGCGCCAAAGAAAAGTCCTGGGGGGTGGCTGGCGGCAGGCGGG
GTCTCTGGCAGCTGCGGGGTTGTACGCTCTGGAGCACAATGTACCCATGC
TCGAGCGAGACCATCACAACGCGCAGGCCTTGGCCACGGGCTTCAGCCAG
ATCCCAGGCGTCGTTTGCGACCCATCGTGCGTCTCCACCAACATCGTCTA
CTTCCGCGTCCTGGGCCTGCCCGCGGGGGAGGTGGTGCGGCGTTTGAAGG
AGCAGTACAACGTCCTTTTGGGCATTGGGGCCTATCGAGGAGACAGGCTC
CGCGCCGTCACGAACCTGATGGTGACCGAGGAGGACATCGCCCGGACGGT
CAGGGCCGTGGCGGAGATCGTAGGCAGGACGAACCGGGAGAAGGTAGACC
GGGCCTGCGCGGGCTTCAAAGAGACTGCGGTGGCAGGGTGAGAGGAGTCC
TAAGATGGCGTTCGCTTTTCGCCGCACGGGAAATTCCTGCGGTAATTGGG
GTTTGCGGACCACCTTCCGACGAAGCTTGACGTCGTCCGAAAATGAATTT
AGAAAACCTGATGATTCGACGTAGTGGATCGTGCACAAGCTTCAGAGGGG
AGGGTGATATTATGAAAGATGACATGTACAGGGGTACTCTATCTAGATCT
GTTTGAGCTTCGCTCCGACACCTTCACGCGTCCATGCGACGGGATGCGCA
AAGCCATGTATAATGCCGAGGTAGGTGACGTCTGTTACAACGAGGACAAA
ACTGTGCAGCGTCTGGAGGAGGCAGTGGCTGGGCTCCTCGGAAAAGAAGC
TGGCATGTTCGCGGCGTCGGGCACGATGACGAATCTGCTGGCCTTGGCGG
CGCACTGCAAGCGTGGGGACGAGATCCTCCTGGGGCACCAGAACCACATT
TACAACTACGAAGGAGGGGGTGCGTCGGCCCTCCTCGGCGTGGCCTTTCA
TCCGGTCGCCACGTTAGGGGATGGGACAAACCGCTTGAGCGACCTGCGCG
AGGCCATCCGTGACGACGATTTCCACTTCGCGCGCACCTCCTTAGTAGCC
GTGGAGACCACGCACAACAAGGCAAATGGGTCGCCCTTGCCGCCGTCCTT
CATGGCAGAGGTAGGTGCACTTTGTCGCGAGCACCAGCTCGTCTTCCACG
TGGATGGGGCGCGTTTGATGAACGCCTCCGTGGCCCTGGAGATGCCCGCC
TCGGAGATCGTGCGGGAGGCGGACTCCGTGTCCCTTTGTCTTAGCAAGGG
CCTGGGCGCACCAATCGGCTCCGTGCTGGTGGGCACGCACGCAATCATTA
AGGAGGCGAAGCGCCAAAGAAAAGTCCTGGGGGGTGGCTGGCGGCAGGCG
GGGTCTCTGGCAGCTGCGGGGTTGTACGCTCTGGAGCACAATGTACCCAT
GCTCGAGCGAGACCATCACAACGCGCAGGCCTTGGCCACGGGCTTCAGCC
AGATCCCAGGCGTCGTTTGCGACCCATCGTGCGTCTCCACCAACATCGTC
TACTTCCGCGTCCTGGGCCTGCCCGCGGGGGAGGTGGTGCGGCGTTTGAA
GGAGCAGTACAACGTCCTTTTGGGCATTGGGGCCTATCGAGGAGACAGGC
TCCGCGCCGTCACGAACCTGATGGTGACCGAGGAGGACATCGCCCGGACG
GTCAGGGCCGTGGCGGAGATCGTAGGCAGGACGAACCGGGAGAAGGTAGA
CCGGGCCTGCGCGGGCTTCAAAGAGACTGCGGTGGCAGGGTGAGAGGAGT
CCTAAGATGGCGTTCGCTTTTCGCCGCACGGGAAATTCCTGCGGTAATTG
GGGTTTGCGGACCACCTTCCGACGAAGCTTGACGTCGTCCGAAAATGAAT
TTAGAAAACCTGATGATTCGACGTAGTGGATCGTGCACAAGCTTCAGAGG
GGAGGGTGATATTATGAAAGATGACATGTACAGGGGTACTCTATCTAGAT
CTGTTTGAGCTTCGCTCCGACACCTTCACGCGTCCATGCGACGGGATGCG
CAAAGCCATGTATAATGCCGAGGTAGGTGACGTCTGTTACAACGAGGACA
AAACTGTGCAGCGTCTGGAGGAGGCAGTGGCTGGGCTCCTCGGAAAAGAA
GCTGGCATGTTCGCGGCGTCGGGCACGATGACGAATCTGCTGGCCTTGGC
GGCGCACTGCAAGCGTGGGGACGAGATCCTCCTGGGGCACCAGAACCACA
TTTACAACTACGAAGGAGGGGGTGCGTCGGCCCTCCTCGGCGTGGCCTTT
CATCCGGTCGCCACGTTAGGGGATGGGACAAACCGCTTGAGCGACCTGCG
CGAGGCCATCCGTGACGACGATTTCCACTTCGCGCGCACCTCCTTAGTAG
CCGTGGAGACCACGCACAACAAGGCAAATGGGTCGCCCTTGCCGCCGTCC
TTCATGGCAGAGGTAGGTGCACTTTGTCGCGAGCACCAGCTCGTCTTCCA
CGTGGATGGGGCGCGTTTGATGAACGCCTCCGTGGCCCTGGAGATGCCCG
CCTCGGAGATCGTGCGGGAGGCGGACTCCGTGTCCCTTTGTCTTAGCAAG
GGCCTGGGCGCACCAATCGGCTCCGTGCTGGTGGGCACGCACGCAATCAT
TAAGGAGGCGAAGCGCCAAAGAAAAGTCCTGGGGGGTGGCTGGCGGCAGG
CGGGGTCTCTGGCAGCTGCGGGGTTGTACGCTCTGGAGCACAATGTACCC
ATGCTCGAGCGAGACCATCACAACGCGCAGGCCTTGGCCACGGGCTTCAG
CCAGATCCCAGGCGTCGTTTGCGACCCATCGTGCGTCTCCACCAACATCG
TCTACTTCCGCGTCCTGGGCCTGCCCGCGGGGGAGGTGGTGCGGCGTTTG
AAGGAGCAGTACAACGTCCTTTTGGGCATTGGGGCCTATCGAGGAGACAG
GCTCCGCGCCGTCACGAACCTGATGGTGACCGAGGAGGACATCGCCCGGA
CGGTCAGGGCCGTGGCGGAGATCGTAGGCAGGACGAACCGGGAGAAGGTA
GACCGGGCCTGCGCGGGCTTCAAAGAGACTGCGGTGGCAGGGTGAGAGGA
GTCCTAAGATGGCGTTCGCTTTTCGCCGCACGGGAAATTCCTGCGGTAAT
TGGGGTTTGCGGACCACCTTCCGACGAAGCTTGACGTCGTCCGAAAATGA
ATTTAGAAAACCTGATGATTCGACGTAGTGGATCGTGCACAAGCTTCAGA
GGGGAGGGTGATATTATGAAAGATGACATGTACAGGGGTACTCTATCTAG
ATCTGT

Synonyms

Publications