EWM28633.1, cds2033 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|585111052|gb|EWM28633.1| (pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0 Query: 1 MSWCHKTPLRRGFQFPFQSGFITLWIVRNLSVKLSVAVKLPLLSTHSCTTRMFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLWSRSTKRGDSASVRSHNKACLHCATATQFLLLQIRCKRKTEEGKIKRGNVSQNTKKQFAVSEGDRASWNFQVRNK 300 MSWCHKTPLRRGFQFPFQSGFITLWIVRNLSVKLSVAVKLPLLSTHSCTTRMFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLWSRSTKRGDSASVRSHNKACLHCATATQFLLLQIRCKRKTEEGKIKRGNVSQNTKKQFAVSEGDRASWNFQVRNK Sbjct: 1 MSWCHKTPLRRGFQFPFQSGFITLWIVRNLSVKLSVAVKLPLLSTHSCTTRMFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLWSRSTKRGDSASVRSHNKACLHCATATQFLLLQIRCKRKTEEGKIKRGNVSQNTKKQFAVSEGDRASWNFQVRNK 300
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|116779961|gb|ABK21496.1| (unknown [Picea sitchensis]) HSP 1 Score: 240.736 bits (613), Expect = 1.211e-76 Identity = 103/175 (58.86%), Postives = 141/175 (80.57%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ ++ SS QVK+SVQR IR SI E+YP LE V+ED+ PKK+ ++V KC H+ ++++N PLFF++RDG + PTLRLLHQYP M+++QVD+GAI+F+L GA+IMCPGLTS GG +++D+PAE PVA+ AEGKE LA+G TKMSA +I+ NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSSEEISSQNQVKASVQRKIRQSIAEEYPDLEPVLEDLLPKKSPLIVAKCQNHINLILVNNVPLFFNVRDGPYMPTLRLLHQYPNIMKKMQVDRGAIKFVLAGANIMCPGLTSPGGALDDDIPAESPVAVMAEGKENALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|1150741419|ref|XP_020244808.1| (malignant T-cell-amplified sequence 1 homolog [Asparagus officinalis] >gi|1141978896|gb|ONK60120.1| uncharacterized protein A4U43_C08F14530 [Asparagus officinalis]) HSP 1 Score: 239.195 bits (609), Expect = 4.290e-76 Identity = 105/175 (60.00%), Postives = 141/175 (80.57%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F +D S+ QVK+SVQR IR SI ++YP LE +M+D+ PKK+ ++VVKC H+ +VV+N PLFF++RDG + PTLRLLHQYP M+++QVD+GAI+F+L GA+IMCPGLTS GG +++D+PAE PVAI AEGK+ LA+G TKMSA +IR NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFTFEDISAQNQVKASVQRKIRQSITDEYPGLEPLMDDLLPKKSPLIVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPDIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDDDVPAESPVAIMAEGKQHALAIGFTKMSAKDIRAINKGIGVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|659099455|ref|XP_008450609.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo]) HSP 1 Score: 238.424 bits (607), Expect = 9.506e-76 Identity = 106/175 (60.57%), Postives = 140/175 (80.00%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ +D S+ QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC H+ +VV+N PLFF++RDG + PTLRLLHQYP MR++QVD+GAI+F+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+ LA+G TKMSA EIR NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMRKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|1063504490|ref|XP_017977011.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Theobroma cacao]) HSP 1 Score: 238.039 bits (606), Expect = 1.392e-75 Identity = 106/175 (60.57%), Postives = 140/175 (80.00%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ +D SS QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC H+ +V++N PLFF++RDG + PTLRLLHQYP M+++QVD+GAIRF+L GA+IMCPGLTS GG ++E++ AE PVAI AEGK+ LA+G TKMSA +IR NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDEEVDAETPVAIMAEGKQHALAIGFTKMSAKDIRAINKGIGVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|727431541|ref|XP_010489730.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Camelina sativa] >gi|727571273|ref|XP_010458182.1| PREDICTED: malignant T-cell-amplified sequence 1 homolog isoform X1 [Camelina sativa] >gi|727605333|ref|XP_010475737.1| PREDICTED: malignant T-cell-amplified sequence 1 homolog [Camelina sativa]) HSP 1 Score: 238.039 bits (606), Expect = 1.694e-75 Identity = 108/175 (61.71%), Postives = 140/175 (80.00%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F ++ SS QVK+SVQR IR SI ++YP LE+VMED+ PKK ++VVKCP H+ +VV+N PLFF +RDG + PTLRLLHQYP MR QVD+GAI+F+L GA+IMCPGLTS GG ++E++ AE+PVAI AEGK+ LA+G TKMSA +I+G NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLETVMEDLLPKKIPLIVVKCPNHLTLVVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMRRFQVDRGAIKFVLSGANIMCPGLTSPGGVLDEEVDAERPVAIYAEGKQHALAIGFTKMSAKDIKGINKGIGVDTMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|778662403|ref|XP_011659846.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis sativus] >gi|700210953|gb|KGN66049.1| hypothetical protein Csa_1G569260 [Cucumis sativus]) HSP 1 Score: 237.269 bits (604), Expect = 2.985e-75 Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ +D S+ QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC H+ +VV+N PLFF++RDG + PTLRLLHQYP M+++QVD+GAI+F+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+ LA+G TKMSA EIR NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|168480809|gb|ACA24498.1| (pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sativus]) HSP 1 Score: 237.269 bits (604), Expect = 3.293e-75 Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ +D S+ QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC H+ +VV+N PLFF++RDG + PTLRLLHQYP M+++QVD+GAI+F+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+ LA+G TKMSA EIR NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIEVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|1204902165|ref|XP_021283272.1| (malignant T-cell-amplified sequence 1 homolog [Herrania umbratica]) HSP 1 Score: 236.884 bits (603), Expect = 4.140e-75 Identity = 105/175 (60.00%), Postives = 140/175 (80.00%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ +D SS QVK+SVQR IR SI E+YP LE V++D+ PKKA ++V KC H+ +V++N PLFF++RDG + PTLRLLHQYP M+++QVD+GAIRF+L GA+IMCPGLTS GG +++++ AE PVAI AEGK+ LA+G TKMSA +IR NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKDIRAINKGIGVDNMHYLNDGLW 175
BLAST of EWM28633.1 vs. NCBI_GenBank
Match: gi|729307445|ref|XP_010528903.1| (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Tarenaya hassleriana]) HSP 1 Score: 236.498 bits (602), Expect = 5.377e-75 Identity = 105/175 (60.00%), Postives = 139/175 (79.43%), Query Frame = 0 Query: 52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLPAEQPVAIRAEGKEMVLALGLTKMSAAEIRGQNKGIAIELVHFLNDGLW 226 MFK+F+ ++ SS QVK+SVQR IR SI ++YP LE V++D+ PKKA ++VVKCP H+ +VV+N PLFF +RDG + PTLRLLHQYP M+ QVD+GAI+F+L GA+IMCPGLTS GG M+E + AE+PVA+ AEGK+ LA+G TKMSA +I+ NKGI ++ +H+LNDGLW Sbjct: 1 MFKKFSSEEVSSQNQVKASVQRKIRQSIQDEYPELEPVLDDLLPKKAPLIVVKCPNHLSLVVINNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGGIMDEQVEAERPVAVYAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLW 175 The following BLAST results are available for this feature:
BLAST of EWM28633.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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