|
|
Properties
| Property Name | Value |
|---|
| Product | glycerophosphodiester phosphodiesterase domain-containing protein 1 |
| Orig transcript id | gnl|cribi|Naga_100002g11.4841.mrna |
| Orig protein id | gnl|cribi|Naga_100002g11.4841 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:694788..696479 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2011 ID=rna2011|Name=rna2011|organism=Nannochloropsis gaditana|type=mRNA|length=2130bp
ATGAGTCATATTGACAACACAGGGGAAAAGAAAGAGCAGCAGCTGCCCCA
CACAACCTCAAAATTGGAATCTTCAATGATTTCCGGACCCAACAGAGAGC
CTTACTCACAACCTTTGGGTTTTGCTGTTGACCTGGACCGAGAGCTTGGA
GGGAAATTTCGAAATTTATGGCCTTACCGCATCCTTAACGAGGTGCAAAG
TGCATTTTGGCCAGTGTGCTTCAACACTGATCACAACGTGGTCATTGCTG
CACCAACAGGTGTAGGTAAGACCATGGCCTTAGAGGCAGCTATTTGTCGT
CTTTTGCAAGAGGATGAGGGTACGGGGAATGGGCGAAAGACTTGGAAAGC
TGTGTACGTCGCCCCTGTCAAGGCTCTATGTCAACAGCGCTTGGTAGACT
GGCAGCGGCGTTTCGAGACGAGATTCGGTCTAAAATGTGCCGAGCTGACC
GGCGACTCAGCAGGTATGCGCGAGGTGGCCGCTTCTCAGATTATCTTGAC
CACACCGGAGAAATTCGACGCGGTTTCGCGCGACTGGCGGGACAATCTCT
ACCTGCTGGGCTCCGTCCGCTTGGTTCTCATCGACGAAGCACATTTTCTG
GGAGAAGATCCGCGGGGTTCAGCCCTCGAGGCACTTATTTGTCGGCTCAG
GGTCATGAAATCCCACAAAGTGATCATGGATAAGGGCTTGCCTGCCTCCA
AGCTTCGCATCCTGGCCGCTTCTGCAACACTGCCAAATGTCGAGGACATA
GGAAGATGGCTAGAGGCACCCCCAGAGGCTACCTTCAACTTTGACTACAC
CCACCGACCCGTCCCTCTTGAAATTCACGTCCTCGGCTACGCAAATGCCA
GCAACCCTTTCCTATTTCAACGCACTCTAGAAGGCCGTGCACCGGAGGTG
ATCGGCCGATATTCGGAGGGGAAGGCGACACTGGTCTTTTGCGGAAGCAA
AAAGGGAGCGGAGGCATTGGCTACTAAGCTTGCTGAAGCTGGAAGTGGAT
TGGGATTGGGCAACAAGCAGTTGGGAAGAGGCGGGATGCAAGGAAGGAGC
CAGCAGCGACTGGAAGCTGAGCGTTTTTCAAACATCCAGAATCATAAGCT
CAAAGACCTCCTTCTAACCTCAGATGGTGCGGTGGCCTTCCACCATGCGG
GTCTTACAGCCGAAGATAGGACATGTGTGGAGACCCTTTTCCAGCAAGGT
GTTGTTCGCACTCTCTGCTCAACCTCCACGCTTGCACAAGGAATCAACAG
TCCTGCCTTTCTAGCCATAATATTGGGAACCACCTTCTGGCGTGGCGCTG
GAACCGGTTACGAAGATTTGCCCGTCTCGGCCGTGTTGCAGATGATAGGC
CGCGCCGGGAGGCCAGGAAACGATGATCGAGGAGTGGCGGTCATCATGAC
AAGCAAGGAGAAGGAACTCATGTACATGTCGATGGCCGAAGGGCAAGAAG
TCGTCGAATCCCAGCTCCCAGCCCGTTTTCACGAGAGCTTGAACGCAGAG
GTGTGTTCCAATGTCATCAGTGACCTTGGCGGCGCGATTCGATGGCTGCG
TTCCACCTTCTTGTGGGTCCGCGCGCATCGCAACCCGGATTATTACACCG
CGCTCCTCCCGCGCGGTACCATCTGTAGGGATGCGGATAACAGTATAGGG
GAATATCTGAAAGCGTATATGCTGCGCATCTTGGCTGAGTTGCAAGCAGA
AAATGTCCTGCGCCTGGAGAAGACAGTCGGTCTGAGCCGCGATGGAGCAC
CAATAGACAATCTAGAAACTGAAAACATTGTGCCGCTTGTAGCGGGACGG
GTCATGAGCAAGACATTGGTGAGCTTTGAAACTATCAAAGTACTCCGTGC
CGTCCCCTCCGACGCCAGCTTGGAGGCCCTACTTTACGCGTGCTGTGGCT
GTCCAGAGGTTTGCAACCCAGTCCGTAAAGCTGAGAAACGGCCATTGAAT
GATCTGCTGAAGCGCGTCCGCTTTTCAAAGGGGCTCGGTATTAAGAAATG
CACGCATCCGTCTCACAAAGCGTTCGTACTTGTTCAGGCTTGTCTTGGGA
ACCTGGAAATCGTTGATTTTACTTTGAAGGTAAGTGACAACCCTATGTGC
TTGATAAGTAGTGTATGTGCTGAGGAGTGA back to topprotein sequence of rna2011 >rna2011-protein ID=rna2011-protein|Name=rna2011|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MELTEILGSVSNASVMIHLIGMYVTFCIVSILLHHFPALLHRPKKRLYEP
VVQPETLDPVKSKSLCCKVSTGTSISVAMKSNVDPRFRVQHIAHRGSRLE
GLPENTLASFAHAVAAGSDVIELDVWLTKDEKVVVFHDADLERMCGAPAS
RAALATVDAREATTKPGTTRERRSIGIPDLLFHELPEISLDSEAHWAVDA
GNRAEACRIPLFSEVLALVPPHKTMIVEVKQKSAVLIRKVHELIVARGRL
ERTIWFSLSEDINADLRAYDPSIPNISSVVGMLKCIFFYYTGILPFVRLN
EDILGIPIDRVDYARVREQKALKALPDAVCAILAFVLGGKPPSALIPPGL
FKHLRARGIPIFFLGVNDEEDLKVAEVAGSTAVLTDRPRWLSQRMMEGKV
ALKQL back to topmRNA from alignment at CM002458.1:694788..696479+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2011 ID=rna2011|Name=rna2011|organism=Nannochloropsis gaditana|type=mRNA|length=1692bp|location=Sequence derived from alignment at CM002458.1:694788..696479+ (Nannochloropsis gaditana)
ATGGAACTCACTGAAATCTTGGGCTCCGTGTCAAATGCCTCTGTAATGAT
ACATCTGATTGGTATGTACGTCACGTTTTGCATCGTAAGTATACTCCTTC
ACCactttcctgccctcctgcACCGTCCCAAAAAACGACTCTATGAACCA
GTCGTCCAGCCAGAGACCCTTGATCCGGTCAAAAGTAAAAGTTTATGTTG
TAAAGTATCAACGGGTACCTCGATTTCTGTTGCCATGAAGAGTAATGTCG
ACCCAAGATTTCGTGTGCAGCACATCGCACACAGAGGCTCTCGGCTGGAG
GGTCTACCGGAGAACACGCTGGCCTCATTCGCCCACGCTGTTGCCGCGGG
CTCAGATGTCATCGAACTTGACGTGTGGTTAACCAAAGATGAGAAAGTGG
TGGTGTTTCATGACGCGGATTTGGAGAGGATGTGCGGAGCACCGGCTTCA
AGGGCAGCTCTCGCGACTGTGGACGCCAGGGAGGCGACAACGAAGCCTGG
CACCACCCGAGAGCGGCGCAGCATAGGCATCCCCGACCTGCTTTTTCATG
AACTACCGGAAATATCTTTGGATAGTGAAGCGCACTGGGCTGTGGATGCA
GGCAATCGGGCAGAGGCCTGTCGCATCCCTCTGTTTTCCGAGGTGCTGGC
GCTAGTCCCCCCCCACAAGACCATGATAGTTGAAGTTAAGCAAAAGAGTG
CGGTAAGTTAATTTGGTCAGAACTTTTGCGTTCCTTTTCCCGTTTCAAAA
CATTTAAGGGTATGCCATAAGTGGAGGCGATTTGAGGAACTGGTTCTCAT
GAGAGAGAGTGAATCGTCGTTCGCGTGTCTTCGACCGGCCATTTTGTACC
TACGTTATCGAGAATGACTAATGAATTGGTTCCTGGTAGGTGCTTATCCG
CAAGGTGCATGAATTAATCGTGGCGCGAGGCCGGCTGGAGCGAACCATCT
GGTTCAGTCTGTCTGAGGATATAAATGCCGACCTCCGAGCTTACGATCCG
TCAATACCCAATATTTCATCAGTCGTGGGCATGCTTAAGGTAATGAGAGG
ATAACGGATGATAAATTGTTCAGCGATGCCGTCCTCTCGATTTCTGCCGT
GTGATCCTCAGAGACCATCTCTCATTTTCTtacccacctccacctccacg
tcgcACAGTGTATATTTTTTTACTACACGGGAATTCTACCGTTTGTCCGA
CTGAATGAGGACATACTGGGGATTCCAATTGATAGGGTGGACTACGCCAG
AGTCAGAGAACAGAAAGCACTGAAAGCTCTTCCTGACGCTGTCTGCGCCA
TTCTGGCCTTCGTGCTGGGCGGAAAGCCACCCTCAGCGCTCATCCCGCCT
GGACTTTTTAAACATCTGCGTGCTCGAGGTATACCGATATTTTTCTTGGG
GGTCaacgatgaagaggacctCAAGGTAAGGAAGAGATTGCTGTAAGTTC
AGGAGAGCAGTAGTGTACGTGTCGCCCGTGTGTGTGCTTGAACATGCAGG
ATCTATGCGTAAGGACGCGGACAATGACAAATATTCGCAATGCCTTTCAT
GCTCCGAAGCTTATCGCATCATTTGTTTTTTTAAAACTCATAGGTTGCCG
AAGTGGCGGGCTCCACCGCGGTTCTAACGGACAGGCCACGATGGCTGAGC
CAACGCATGATGGAGGGCAAAGTAGCGTTGAAGCAACTGTGA back to topCoding sequence (CDS) from alignment at CM002458.1:694788..696479+ >rna2011 ID=rna2011|Name=rna2011|organism=Nannochloropsis gaditana|type=CDS|length=4872bp|location=Sequence derived from alignment at CM002458.1:694788..696479+ (Nannochloropsis gaditana)
ATGGAACTCACTGAAATCTTGGGCTCCGTGTCAAATGCCTCTGTAATGAT
ACATCTGATTGGTATGTACGTCACGTTTTGCATCGTAAGTATACTCCTTC
ACCactttcctgccctcctgcACCGTCCCAAAAAACGACTCTATGAACCA
GTCGTCCAGCCAGAGACCCTTGATCCGGTCAAAAGTAAAAGTTTATGTTG
TAAAGTATCAACGGGTACCTCGATTTCTGTTGCCATGAAGAGTAATGTCG
ACCCAAGATTTCGTGTGCAGCACATCGCACACAGAGGCTCTCGGCTGGAG
GGTCTACCGGAGAACACGCTGGCCTCATTCGCCCACGCTGTTGCCGCGGG
CTCAGATGTCATCGAACTTGACGTGTGGTTAACCAAAGATGAGAAAGTGG
TGGTGTTTCATGACGCGGATTTGGAGAGGATGTGCGGAGCACCGGCTTCA
AGGGCAGCTCTCGCGACTGTGGACGCCAGGGAGGCGACAACGAAGCCTGG
CACCACCCGAGAGCGGCGCAGCATAGGCATCCCCGACCTGCTTTTTCATG
AACTACCGGAAATATCTTTGGATAGTGAAGCGCACTGGGCTGTGGATGCA
GGCAATCGGGCAGAGGCCTGTCGCATCCCTCTGTTTTCCGAGGTGCTGGC
GCTAGTCCCCCCCCACAAGACCATGATAGTTGAAGTTAAGCAAAAGAGTG
CGGTGCTTATCCGCAAGGTGCATGAATTAATCGTGGCGCGAGGCCGGCTG
GAGCGAACCATCTGGTTCAGTCTGTCTGAGGATATAAATGCCGACCTCCG
AGCTTACGATCCGTCAATACCCAATATTTCATCAGTCGTGGGCATGCTTA
AGTGTATATTTTTTTACTACACGGGAATTCTACCGTTTGTCCGACTGAAT
GAGGACATACTGGGGATTCCAATTGATAGGGTGGACTACGCCAGAGTCAG
AGAACAGAAAGCACTGAAAGCTCTTCCTGACGCTGTCTGCGCCATTCTGG
CCTTCGTGCTGGGCGGAAAGCCACCCTCAGCGCTCATCCCGCCTGGACTT
TTTAAACATCTGCGTGCTCGAGGTATACCGATATTTTTCTTGGGGGTCaa
cgatgaagaggacctCAAGGTTGCCGAAGTGGCGGGCTCCACCGCGGTTC
TAACGGACAGGCCACGATGGCTGAGCCAACGCATGATGGAGGGCAAAGTA
GCGTTGAAGCAACTGTGAATGGAACTCACTGAAATCTTGGGCTCCGTGTC
AAATGCCTCTGTAATGATACATCTGATTGGTATGTACGTCACGTTTTGCA
TCGTAAGTATACTCCTTCACCactttcctgccctcctgcACCGTCCCAAA
AAACGACTCTATGAACCAGTCGTCCAGCCAGAGACCCTTGATCCGGTCAA
AAGTAAAAGTTTATGTTGTAAAGTATCAACGGGTACCTCGATTTCTGTTG
CCATGAAGAGTAATGTCGACCCAAGATTTCGTGTGCAGCACATCGCACAC
AGAGGCTCTCGGCTGGAGGGTCTACCGGAGAACACGCTGGCCTCATTCGC
CCACGCTGTTGCCGCGGGCTCAGATGTCATCGAACTTGACGTGTGGTTAA
CCAAAGATGAGAAAGTGGTGGTGTTTCATGACGCGGATTTGGAGAGGATG
TGCGGAGCACCGGCTTCAAGGGCAGCTCTCGCGACTGTGGACGCCAGGGA
GGCGACAACGAAGCCTGGCACCACCCGAGAGCGGCGCAGCATAGGCATCC
CCGACCTGCTTTTTCATGAACTACCGGAAATATCTTTGGATAGTGAAGCG
CACTGGGCTGTGGATGCAGGCAATCGGGCAGAGGCCTGTCGCATCCCTCT
GTTTTCCGAGGTGCTGGCGCTAGTCCCCCCCCACAAGACCATGATAGTTG
AAGTTAAGCAAAAGAGTGCGGTGCTTATCCGCAAGGTGCATGAATTAATC
GTGGCGCGAGGCCGGCTGGAGCGAACCATCTGGTTCAGTCTGTCTGAGGA
TATAAATGCCGACCTCCGAGCTTACGATCCGTCAATACCCAATATTTCAT
CAGTCGTGGGCATGCTTAAGTGTATATTTTTTTACTACACGGGAATTCTA
CCGTTTGTCCGACTGAATGAGGACATACTGGGGATTCCAATTGATAGGGT
GGACTACGCCAGAGTCAGAGAACAGAAAGCACTGAAAGCTCTTCCTGACG
CTGTCTGCGCCATTCTGGCCTTCGTGCTGGGCGGAAAGCCACCCTCAGCG
CTCATCCCGCCTGGACTTTTTAAACATCTGCGTGCTCGAGGTATACCGAT
ATTTTTCTTGGGGGTCaacgatgaagaggacctCAAGGTTGCCGAAGTGG
CGGGCTCCACCGCGGTTCTAACGGACAGGCCACGATGGCTGAGCCAACGC
ATGATGGAGGGCAAAGTAGCGTTGAAGCAACTGTGAATGGAACTCACTGA
AATCTTGGGCTCCGTGTCAAATGCCTCTGTAATGATACATCTGATTGGTA
TGTACGTCACGTTTTGCATCGTAAGTATACTCCTTCACCactttcctgcc
ctcctgcACCGTCCCAAAAAACGACTCTATGAACCAGTCGTCCAGCCAGA
GACCCTTGATCCGGTCAAAAGTAAAAGTTTATGTTGTAAAGTATCAACGG
GTACCTCGATTTCTGTTGCCATGAAGAGTAATGTCGACCCAAGATTTCGT
GTGCAGCACATCGCACACAGAGGCTCTCGGCTGGAGGGTCTACCGGAGAA
CACGCTGGCCTCATTCGCCCACGCTGTTGCCGCGGGCTCAGATGTCATCG
AACTTGACGTGTGGTTAACCAAAGATGAGAAAGTGGTGGTGTTTCATGAC
GCGGATTTGGAGAGGATGTGCGGAGCACCGGCTTCAAGGGCAGCTCTCGC
GACTGTGGACGCCAGGGAGGCGACAACGAAGCCTGGCACCACCCGAGAGC
GGCGCAGCATAGGCATCCCCGACCTGCTTTTTCATGAACTACCGGAAATA
TCTTTGGATAGTGAAGCGCACTGGGCTGTGGATGCAGGCAATCGGGCAGA
GGCCTGTCGCATCCCTCTGTTTTCCGAGGTGCTGGCGCTAGTCCCCCCCC
ACAAGACCATGATAGTTGAAGTTAAGCAAAAGAGTGCGGTGCTTATCCGC
AAGGTGCATGAATTAATCGTGGCGCGAGGCCGGCTGGAGCGAACCATCTG
GTTCAGTCTGTCTGAGGATATAAATGCCGACCTCCGAGCTTACGATCCGT
CAATACCCAATATTTCATCAGTCGTGGGCATGCTTAAGTGTATATTTTTT
TACTACACGGGAATTCTACCGTTTGTCCGACTGAATGAGGACATACTGGG
GATTCCAATTGATAGGGTGGACTACGCCAGAGTCAGAGAACAGAAAGCAC
TGAAAGCTCTTCCTGACGCTGTCTGCGCCATTCTGGCCTTCGTGCTGGGC
GGAAAGCCACCCTCAGCGCTCATCCCGCCTGGACTTTTTAAACATCTGCG
TGCTCGAGGTATACCGATATTTTTCTTGGGGGTCaacgatgaagaggacc
tCAAGGTTGCCGAAGTGGCGGGCTCCACCGCGGTTCTAACGGACAGGCCA
CGATGGCTGAGCCAACGCATGATGGAGGGCAAAGTAGCGTTGAAGCAACT
GTGAATGGAACTCACTGAAATCTTGGGCTCCGTGTCAAATGCCTCTGTAA
TGATACATCTGATTGGTATGTACGTCACGTTTTGCATCGTAAGTATACTC
CTTCACCactttcctgccctcctgcACCGTCCCAAAAAACGACTCTATGA
ACCAGTCGTCCAGCCAGAGACCCTTGATCCGGTCAAAAGTAAAAGTTTAT
GTTGTAAAGTATCAACGGGTACCTCGATTTCTGTTGCCATGAAGAGTAAT
GTCGACCCAAGATTTCGTGTGCAGCACATCGCACACAGAGGCTCTCGGCT
GGAGGGTCTACCGGAGAACACGCTGGCCTCATTCGCCCACGCTGTTGCCG
CGGGCTCAGATGTCATCGAACTTGACGTGTGGTTAACCAAAGATGAGAAA
GTGGTGGTGTTTCATGACGCGGATTTGGAGAGGATGTGCGGAGCACCGGC
TTCAAGGGCAGCTCTCGCGACTGTGGACGCCAGGGAGGCGACAACGAAGC
CTGGCACCACCCGAGAGCGGCGCAGCATAGGCATCCCCGACCTGCTTTTT
CATGAACTACCGGAAATATCTTTGGATAGTGAAGCGCACTGGGCTGTGGA
TGCAGGCAATCGGGCAGAGGCCTGTCGCATCCCTCTGTTTTCCGAGGTGC
TGGCGCTAGTCCCCCCCCACAAGACCATGATAGTTGAAGTTAAGCAAAAG
AGTGCGGTGCTTATCCGCAAGGTGCATGAATTAATCGTGGCGCGAGGCCG
GCTGGAGCGAACCATCTGGTTCAGTCTGTCTGAGGATATAAATGCCGACC
TCCGAGCTTACGATCCGTCAATACCCAATATTTCATCAGTCGTGGGCATG
CTTAAGTGTATATTTTTTTACTACACGGGAATTCTACCGTTTGTCCGACT
GAATGAGGACATACTGGGGATTCCAATTGATAGGGTGGACTACGCCAGAG
TCAGAGAACAGAAAGCACTGAAAGCTCTTCCTGACGCTGTCTGCGCCATT
CTGGCCTTCGTGCTGGGCGGAAAGCCACCCTCAGCGCTCATCCCGCCTGG
ACTTTTTAAACATCTGCGTGCTCGAGGTATACCGATATTTTTCTTGGGGG
TCaacgatgaagaggacctCAAGGTTGCCGAAGTGGCGGGCTCCACCGCG
GTTCTAACGGACAGGCCACGATGGCTGAGCCAACGCATGATGGAGGGCAA
AGTAGCGTTGAAGCAACTGTGA back to top
|