LHCP33, gene1914 (gene) Nannochloropsis gaditana

Overview
NameLHCP33
Unique Namegene1914
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:662712..666488 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100002g18
Gene biotypeprotein_coding
GeneLHCP33
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:662712..666488 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0016020membrane
GO:0005634nucleus
GO:0009579thylakoid
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006091generation of precursor metabolites and energy
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0016740transferase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL111ngnoL111Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02950NO04G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna2003rna2003-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna2003rna2003Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna2003

>rna2003-protein ID=rna2003-protein|Name=rna2003|organism=Nannochloropsis gaditana|type=polypeptide|length=621bp
MKFLALATIVSTASAFLAPVPMHTRTQGRMYMADQAPVDEEVRSIALPFA
AKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLV
QELYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFEGRVPG
DIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQASISDKPILEQ
TFDNRATTPPLARGGGDPLPHPLTAVFSPGPLFFYNRYRPCVSVIKTEIK
APSGLALFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLD
ARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHG
FRLSTFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMR
LRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTT
NAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFAC
RSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGH
PGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQRVRHESVPVIKAS
ITITPVLPINHGESNQHQIPQ
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Synonyms
Publications