rna2002, rna2002 (mRNA) Nannochloropsis gaditana

Overview
Namerna2002
Unique Namerna2002
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length771
Alignment locationCM002458.1:661222..662219 -

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Properties
Property NameValue
Productglutathione s-transferase
Orig transcript idgnl|cribi|Naga_100002g19.4924.mrna
Orig protein idgnl|cribi|Naga_100002g19.4924
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:661222..662219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g19gene1913Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2002rna2002-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28805.1cds1994Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2002 ID=rna2002|Name=rna2002|organism=Nannochloropsis gaditana|type=mRNA|length=771bp
ATGAAGCTTGCGATTCTCTTGGCGCGCAACTCAACAACAAACCATCAAGC
ACATACAAAACAGGAATATCAGCTTGCGAGTTTGGGGAACGTCATCGTGC
ATTTTTCAGTATCTATGACCATGCGTGATGTCATTGGAGATTTCAAGACC
GACATGCTCATGTCTGAAATGCAAGACTTCACTGAAAAGCTTAACAAATG
GGGCCTCAAAAGCCCACGGCCTTGGAACGAGTTTGCAGGCATCCTCAAGA
AACCCAAGAACAAACAAGAATTAGAGGAGCGCCTCCAGACGAACTTCATG
TTGTACAAGGCAAATTACATTCTATTGCTGGCAGGTATCATGAGTTGGTC
AGTCATCATATCGCCTTTCACAATGGGTGTCCTTTTTGTCTGCGCCGGTG
TTTTTGCCTTGTTGCTTGGATGGCCACAGCCTTTGGAGATCTTTGGACGG
CTCCTCACGCCAAAGGAGAAAACGATGATTGCTGCTAGCTTCACTTTCTT
TCTCCTCCTGATCACGGGAGCCATGGTCAAGCTCATATGGAGTTTCTCAC
TGGGCGTTTCTCTTATAGTCGCACACATGTCATTCCGACCGCGATGCTCG
GGACACCGCAAAGGTATCATTGACGACGCCAACTTGTCTCAAAGCCCTAC
AAAGATTGTGGAGGACATCGAGTCGCCCAACAACGAGGACAGCGGCCTGA
ATTCTTATCACTCCGAGATAGCCCAGCTCAGAGCGACTGCTCACTCTATG
TCACGAGACGGTCGCGATTAG
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protein sequence of rna2002

>rna2002-protein ID=rna2002-protein|Name=rna2002|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MAVSARFRSRCGLAVALLTCGSFLTSAFPGSQPPTLPARPLAGRRPTFLS
PRRSYRPQYTRTTFSSAFAAADNAALRNIPPSSHGYKPKVWAYYRSRSKI
IEWYCQELGVDYEAVQVDMGAGQHKASDFVKNVNPFGKLPVITMADGTPL
IESGAQLLYLADVFDPNVSTAEERGLASQWTHFANASLGPSIFMKEQREA
GVMDKLFAVLNELLAESSYLQGERFGVGDVAVGSYLSYIPVFFPDQISLD
AYPFLRAYINRITSRPAFKRTVGAPPPSTA
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mRNA from alignment at CM002458.1:661222..662219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2002 ID=rna2002|Name=rna2002|organism=Nannochloropsis gaditana|type=mRNA|length=998bp|location=Sequence derived from alignment at CM002458.1:661222..662219- (Nannochloropsis gaditana)
ATGGCAGTGAGCGCGAGGTTCCGATCGCGGTGCGGGCTGGCCGTGGCGTT
GTTGACGTGCGGATCTTTCTTGACGTCAGCCTTCCCGGGCAGCCAACCTC
CCACCCTGCCCGCCCGCCCTCTTGCTGGCAGACGGCCAACGTTTCTGTCA
CCCCGACGCTCGTATCGTCCTCAATATACAAGAACCACTTTTTCAAGTGC
CTTCGCTGCAGCTGATAATGCAGCTCTTCGAAACATACCACCATCCTCGC
ATGGCTACAAACCTAAGGTCTGGGCGTATTATCGGTCCAGATCGAAAATT
ATAGAGTGGTATTGTCAAGAACTTGGCGTTGATTACGAAGCCGTACAAGT
AGACATGGGTGCAGGACAGCACAAAGCTTCAGACTTCGTCAAAAATGTCA
ATCCTTTCGGTAAGTGTTTGATAGTGTGGTCGGGACCGGTCTTGGTTCCC
TGACCTCCCTCGATGCTGTGCATGTTCAAGCCATGTGAATTGTACCCTTC
GAAATGAAAACACGAACGGACACCGATTATTCGCACGTTGAAATGATACA
CTGCTGTTTTATAGGTAAGCTGCCCGTCATCACAATGGCTGATGGCACCC
CTTTAATCGAGTCGGGCGCACAGCTCCTGTATTTGGCAGATGTTTTCGAT
CCCAACGTCTCCACAGCAGAAGAGAGAGGACTGGCCTCCCAGTGGACTCA
CTTTGCAAATGCTAGCCTAGGACCATCGATTTTTATGAAAGAGCAACGCG
AGGCGGGTGTGATGGACAAGCTTTTCGCTGTCCTGAACGAGCTGCTCGCC
GAATCCTCCTACCTCCAAGGGGAGCGATTCGGAGTTGGCGACGTTGCCGT
GGGCTCTTACTTGTCTTACATCCCTGTCTTTTTCCCAGACCAAATTTCAC
TTGACGCATACCCATTTCTGCGAGCGTACATCAATCGAATTACTTCGCGT
CCCGCTTTTAAACGAACGGTCGGCGCCCCTCCTCCCTCTACGGCGTGA
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Coding sequence (CDS) from alignment at CM002458.1:661222..662219-

>rna2002 ID=rna2002|Name=rna2002|organism=Nannochloropsis gaditana|type=CDS|length=1686bp|location=Sequence derived from alignment at CM002458.1:661222..662219- (Nannochloropsis gaditana)
GTAAGCTGCCCGTCATCACAATGGCTGATGGCACCCCTTTAATCGAGTCG
GGCGCACAGCTCCTGTATTTGGCAGATGTTTTCGATCCCAACGTCTCCAC
AGCAGAAGAGAGAGGACTGGCCTCCCAGTGGACTCACTTTGCAAATGCTA
GCCTAGGACCATCGATTTTTATGAAAGAGCAACGCGAGGCGGGTGTGATG
GACAAGCTTTTCGCTGTCCTGAACGAGCTGCTCGCCGAATCCTCCTACCT
CCAAGGGGAGCGATTCGGAGTTGGCGACGTTGCCGTGGGCTCTTACTTGT
CTTACATCCCTGTCTTTTTCCCAGACCAAATTTCACTTGACGCATACCCA
TTTCTGCGAGCGTACATCAATCGAATTACTTCGCGTCCCGCTTTTAAACG
AACGGTCGGCGCCCCTCCTCCCTCTACGGCGTGAATGGCAGTGAGCGCGA
GGTTCCGATCGCGGTGCGGGCTGGCCGTGGCGTTGTTGACGTGCGGATCT
TTCTTGACGTCAGCCTTCCCGGGCAGCCAACCTCCCACCCTGCCCGCCCG
CCCTCTTGCTGGCAGACGGCCAACGTTTCTGTCACCCCGACGCTCGTATC
GTCCTCAATATACAAGAACCACTTTTTCAAGTGCCTTCGCTGCAGCTGAT
AATGCAGCTCTTCGAAACATACCACCATCCTCGCATGGCTACAAACCTAA
GGTCTGGGCGTATTATCGGTCCAGATCGAAAATTATAGAGTGGTATTGTC
AAGAACTTGGCGTTGATTACGAAGCCGTACAAGTAGACATGGGTGCAGGA
CAGCACAAAGCTTCAGACTTCGTCAAAAATGTCAATCCTTTCGGTAAGCT
GCCCGTCATCACAATGGCTGATGGCACCCCTTTAATCGAGTCGGGCGCAC
AGCTCCTGTATTTGGCAGATGTTTTCGATCCCAACGTCTCCACAGCAGAA
GAGAGAGGACTGGCCTCCCAGTGGACTCACTTTGCAAATGCTAGCCTAGG
ACCATCGATTTTTATGAAAGAGCAACGCGAGGCGGGTGTGATGGACAAGC
TTTTCGCTGTCCTGAACGAGCTGCTCGCCGAATCCTCCTACCTCCAAGGG
GAGCGATTCGGAGTTGGCGACGTTGCCGTGGGCTCTTACTTGTCTTACAT
CCCTGTCTTTTTCCCAGACCAAATTTCACTTGACGCATACCCATTTCTGC
GAGCGTACATCAATCGAATTACTTCGCGTCCCGCTTTTAAACGAACGGTC
GGCGCCCCTCCTCCCTCTACGGCGTGAATGGCAGTGAGCGCGAGGTTCCG
ATCGCGGTGCGGGCTGGCCGTGGCGTTGTTGACGTGCGGATCTTTCTTGA
CGTCAGCCTTCCCGGGCAGCCAACCTCCCACCCTGCCCGCCCGCCCTCTT
GCTGGCAGACGGCCAACGTTTCTGTCACCCCGACGCTCGTATCGTCCTCA
ATATACAAGAACCACTTTTTCAAGTGCCTTCGCTGCAGCTGATAATGCAG
CTCTTCGAAACATACCACCATCCTCGCATGGCTACAAACCTAAGGTCTGG
GCGTATTATCGGTCCAGATCGAAAATTATAGAGTGGTATTGTCAAGAACT
TGGCGTTGATTACGAAGCCGTACAAGTAGACATGGGTGCAGGACAGCACA
AAGCTTCAGACTTCGTCAAAAATGTCAATCCTTTCG
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Synonyms
Publications