EWM28706.1, cds1962 (CDS) Nannochloropsis gaditana

Overview
NameEWM28706.1
Unique Namecds1962
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:591214..592083 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28706.1
Productmitochondrial carrier domain-containing protein
Orig transcript idgnl|cribi|Naga_100002g51.4825.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:591214..592083 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
Homology
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|585111129|gb|EWM28706.1| (mitochondrial carrier domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MPLARRLMEFLFMLLLVEGDGLVAKIFFHNKLPTQLPCSTMACCRRNPAKNQGRKGGGNETEHAHKQSQQLCIRNQHHKSAEGGADFASSLDPSSKSTSPLDSITAFKPDILSPSSFILFALMAFYIVDACLCDLWLPPANAVDASLITEIDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQVLFVM 289
            MPLARRLMEFLFMLLLVEGDGLVAKIFFHNKLPTQLPCSTMACCRRNPAKNQGRKGGGNETEHAHKQSQQLCIRNQHHKSAEGGADFASSLDPSSKSTSPLDSITAFKPDILSPSSFILFALMAFYIVDACLCDLWLPPANAVDASLITEIDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQVLFVM
Sbjct:    1 MPLARRLMEFLFMLLLVEGDGLVAKIFFHNKLPTQLPCSTMACCRRNPAKNQGRKGGGNETEHAHKQSQQLCIRNQHHKSAEGGADFASSLDPSSKSTSPLDSITAFKPDILSPSSFILFALMAFYIVDACLCDLWLPPANAVDASLITEIDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQVLFVM 289          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|873220207|emb|CEM36155.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 172.17 bits (435), Expect = 5.277e-48
Identity = 81/136 (59.56%), Postives = 106/136 (77.94%), Query Frame = 0
Query:  150 EIDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            ++DV  ILQK+ K+A+GGGLSG+ AS++Q+ +LMWLRT+M YQY  GLP   T+  L+ EGG+ RFY+GLP AL Q PLS+F D AANA ++A LDSFEST GLPL +K+A  S+AAG WR+V+ P+D  KTT+QV
Sbjct:   57 KVDVKTILQKSAKRAVGGGLSGSAASVLQVFSLMWLRTSMNYQYTTGLPLNTTLATLWSEGGVPRFYRGLPFALVQAPLSKFGDTAANAGVLALLDSFESTMGLPLFVKTASASVAAGLWRIVIFPVDTFKTTMQV 192          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|1210519656|dbj|GAX21425.1| (hypothetical protein FisN_10Hu003 [Fistulifera solaris])

HSP 1 Score: 167.548 bits (423), Expect = 3.872e-46
Identity = 82/135 (60.74%), Postives = 100/135 (74.07%), Query Frame = 0
Query:  151 IDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            +D + IL KAGKKALGGG +GA AS+VQ+++LMWLRTTM YQYRYG      +  L+ EGGI RFYQGLP AL Q PL+RF D AAN  +IA L+S   T+ LPLP+K+A GSI AG WR+ L P+D  KT+LQV
Sbjct:   45 VDWSAILAKAGKKALGGGTAGASASVVQVLSLMWLRTTMNYQYRYGGSLPNALSTLWSEGGIPRFYQGLPFALVQGPLTRFGDTAANVGIIALLESLPQTKELPLPVKTACGSITAGLWRIFLMPVDASKTSLQV 179          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|929754464|ref|XP_014152214.1| (hypothetical protein SARC_09248 [Sphaeroforma arctica JP610] >gi|906946802|gb|KNC78312.1| hypothetical protein SARC_09248 [Sphaeroforma arctica JP610])

HSP 1 Score: 157.147 bits (396), Expect = 1.530e-42
Identity = 75/130 (57.69%), Postives = 95/130 (73.08%), Query Frame = 0
Query:  156 ILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            IL  AGK+A+GGG+ GAVA  + + +LMWLRTTM YQYRYG       + LYKEGGI RFY+G   ALFQ PLSRF D AANA ++A LDS+++T  LP+ +K+ F S AA TWR+ L P+D +KTT+QV
Sbjct:   21 ILTAAGKRAIGGGVPGAVAMGINVTSLMWLRTTMNYQYRYGTSTTEAFKHLYKEGGIRRFYRGYGPALFQGPLSRFGDTAANAGVLALLDSYDTTSNLPVGVKTIFASAAAATWRVFLMPVDTLKTTMQV 150          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|585111150|gb|EWM28727.1| (Mitochondrial carrier domain protein [Nannochloropsis gaditana])

HSP 1 Score: 152.525 bits (384), Expect = 2.075e-39
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0
Query:  156 ILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            I + AGK+ALGGG+ GA+A ++Q++TLMWLRT   YQYRYG  F   V  LYK+GG+ RFY+GL  AL Q PLSRF   AAN    A L +FE+TRGLPL + +A  ++AAG+WR+ L P+D  KT LQV
Sbjct:   78 IFRIAGKRALGGGIPGALAGMMQVVTLMWLRTVGNYQYRYGTSFTEAVATLYKQGGVGRFYEGLGFALIQGPLSRFGSTAANDGCRALLKNFEATRGLPLFVPTAMAALAAGSWRIFLMPIDTAKTVLQV 207          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|145512157|ref|XP_001441995.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124409267|emb|CAK74598.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 148.288 bits (373), Expect = 3.195e-39
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 0
Query:  157 LQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
             ++   KA   GLSG++A  +Q+ +LMWLRTTM YQYRYG     T++ LY EGGI RFY+GL  AL Q PLSRF D  AN   +  +DSFESTR LP+ +++A GS+ AG +R+ LTP+D VKT LQV
Sbjct:   19 FKEVASKAFRSGLSGSMAMAIQVCSLMWLRTTMNYQYRYGGTIVGTLKHLYSEGGILRFYKGLAPALLQGPLSRFGDTFANTLFLTLMDSFESTRNLPVMIRAAGGSVMAGVFRIALTPIDTVKTILQV 147          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|551537360|ref|XP_005757308.1| (hypothetical protein EMIHUDRAFT_360139 [Emiliania huxleyi CCMP1516] >gi|485604547|gb|EOD04879.1| hypothetical protein EMIHUDRAFT_360139 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 148.288 bits (373), Expect = 9.381e-39
Identity = 70/130 (53.85%), Postives = 91/130 (70.00%), Query Frame = 0
Query:  156 ILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            I+QKA KKA+GGGLSGA+A +VQ++ LMW+RTTM YQYRYG      ++ LY EGGI RFYQG+  A+FQ PLSRF D AAN  M+    +      +P+ +K+   S A   WR+++TPLD +KTTLQV
Sbjct:   74 IMQKAAKKAIGGGLSGAIAGVVQVLALMWMRTTMNYQYRYGSGTLTAMKALYAEGGIARFYQGVQFAIFQTPLSRFGDTAANTGMMELFAAMAWGANVPIAVKTGCASAAGSLWRILITPLDTLKTTLQV 203          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|219121279|ref|XP_002185866.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582715|gb|ACI65336.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 145.976 bits (367), Expect = 2.066e-37
Identity = 81/147 (55.10%), Postives = 105/147 (71.43%), Query Frame = 0
Query:  139 PANAVDASLITEIDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            PAN + A     +D  GI QKA KKALGGG +GA A++VQ+ +LMWLRT+M YQYRYG    +++  L+ EGGI R YQGLP AL Q PL+RF D AAN  ++  L++  +T+ LPLPLK+A GS+AAG WR+VL P+D  KT +QV
Sbjct:   89 PANLISAGATETVDWQGIFQKASKKALGGGKAGAAAAVVQVCSLMWLRTSMNYQYRYGGNLQSSLNTLWAEGGIGRLYQGLPFALVQGPLTRFGDTAANVGILVLLETLPATQDLPLPLKTACGSVAAGLWRIVLMPVDASKTVMQV 235          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|760439217|ref|XP_011396677.1| (hypothetical protein F751_6767 [Auxenochlorella protothecoides] >gi|675351359|gb|KFM23799.1| hypothetical protein F751_6767 [Auxenochlorella protothecoides])

HSP 1 Score: 144.05 bits (362), Expect = 3.015e-37
Identity = 77/149 (51.68%), Postives = 106/149 (71.14%), Query Frame = 0
Query:  137 LPPANAVDASLITEIDVAGILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQV 285
            L PA A   S  T +  + +L+ AGKKALGGG+ GA A  +Q+++LMWLRTT+ YQYRYG+   A ++ LYKEGG+ RFY+G+  AL Q P+SRF D AANA ++  L+   ST+ LP+P+K+A  S AAG +R+ L P+D +KTT+QV
Sbjct:   39 LVPAVAYQPSEATPL--SQVLRNAGKKALGGGIPGAAAMGIQVVSLMWLRTTVNYQYRYGMTTTAAMKTLYKEGGVLRFYRGVGPALIQGPMSRFGDTAANAGVLTLLNESASTKDLPIPIKTAAASAAAGGFRIFLMPVDALKTTMQV 185          
BLAST of EWM28706.1 vs. NCBI_GenBank
Match: gi|302846029|ref|XP_002954552.1| (hypothetical protein VOLCADRAFT_82831 [Volvox carteri f. nagariensis] >gi|300260224|gb|EFJ44445.1| hypothetical protein VOLCADRAFT_82831 [Volvox carteri f. nagariensis])

HSP 1 Score: 145.976 bits (367), Expect = 3.255e-37
Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 0
Query:  156 ILQKAGKKALGGGLSGAVASLVQLITLMWLRTTMQYQYRYGLPFAATVQQLYKEGGITRFYQGLPVALFQLPLSRFADVAANAFMIAALDSFESTRGLPLPLKSAFGSIAAGTWRLVLTPLDVVKTTLQ 284
            +L  AG+K+LGGG+ G VA   Q+++LMW+RTT+ YQYRYG       + LYKEGGI RFY+GL  AL Q PLSRF D AANA  +A LDS+ES++GLP+ +K+   S AAG +R++L P+D  KT +Q
Sbjct:   79 VLSDAGRKSLGGGIPGMVAMATQVLSLMWMRTTINYQYRYGTDTMTAFRTLYKEGGIPRFYRGLGPALIQGPLSRFGDTAANAGTLALLDSYESSKGLPVGVKTLVASSAAGAFRILLMPVDTCKTIMQ 207          
The following BLAST results are available for this feature:
BLAST of EWM28706.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111129|gb|EWM28706.1|0.000e+0100.00mitochondrial carrier domain-containing protein [N... [more]
gi|873220207|emb|CEM36155.1|5.277e-4859.56unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210519656|dbj|GAX21425.1|3.872e-4660.74hypothetical protein FisN_10Hu003 [Fistulifera sol... [more]
gi|929754464|ref|XP_014152214.1|1.530e-4257.69hypothetical protein SARC_09248 [Sphaeroforma arct... [more]
gi|585111150|gb|EWM28727.1|2.075e-3956.15Mitochondrial carrier domain protein [Nannochlorop... [more]
gi|145512157|ref|XP_001441995.1|3.195e-3954.26hypothetical protein [Paramecium tetraurelia strai... [more]
gi|551537360|ref|XP_005757308.1|9.381e-3953.85hypothetical protein EMIHUDRAFT_360139 [Emiliania ... [more]
gi|219121279|ref|XP_002185866.1|2.066e-3755.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|760439217|ref|XP_011396677.1|3.015e-3751.68hypothetical protein F751_6767 [Auxenochlorella pr... [more]
gi|302846029|ref|XP_002954552.1|3.255e-3754.26hypothetical protein VOLCADRAFT_82831 [Volvox cart... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1967rna1967Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications