EWM28796.1, cds1893 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|585111219|gb|EWM28796.1| (sorting nexin-29 [Nannochloropsis gaditana]) HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0 Query: 1 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGSKK 303 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGSKK Sbjct: 1 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGSKK 303
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|673035588|ref|XP_008871755.1| (AGC protein kinase [Aphanomyces invadans] >gi|574472194|gb|ETV99199.1| AGC protein kinase [Aphanomyces invadans]) HSP 1 Score: 66.2402 bits (160), Expect = 1.470e-8 Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 0 Query: 28 RGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINP 130 R ++R+T++ M++E + + L KRY+EF LH+ LC ++ + FP K F++ S VIE RR FE Y+ LL L + P E+E+FL P+ NP Sbjct: 18 RHQQRYTVFMMSVESTDSTWNLCKRYSEFRALHKALCP-RFAAVRSLPFPPKRLFSSLSLRVIEQRRLGFETYMQALLALRPRPP----ELETFLS-PRSANP 114
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|698797592|ref|XP_009831825.1| (AGC protein kinase [Aphanomyces astaci] >gi|574113616|gb|ETV79106.1| AGC protein kinase [Aphanomyces astaci]) HSP 1 Score: 62.003 bits (149), Expect = 3.476e-7 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 0 Query: 30 EKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFL 122 ++R+T++ M++E + + L KRY+EF LH+ LC +Y + FP K F++ S VIE RR FE YL LL L P E+E+FL Sbjct: 22 QQRYTVFMMSVESADSTWNLGKRYSEFRALHKLLCP-RYATVRSQPFPPKRLFSSLSLRVIEQRRVGFETYLQALLAL----RPRPHELEAFL 109
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|298710236|emb|CBJ26311.1| (similar to Serine/threonine-protein kinase Sgk3 (Serum/glucocorticoid-regulated kinase 3) (Serum/glucocorticoid-regulated kinase-like) isoform 3 [Ectocarpus siliculosus]) HSP 1 Score: 60.8474 bits (146), Expect = 5.933e-7 Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 0 Query: 31 KRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFL 122 +R+T Y + + +G ++ + KRY++F L +Q+ E+ F FP+K FN F+E E RRT F+ +L L+ L P +EV+ FL Sbjct: 133 QRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSL-RKQHKEVGSFRFPHKSKFNTFAEHTKERRRTGFDEFLRLVANLH----PRPEEVDVFL 219 The following BLAST results are available for this feature:
BLAST of EWM28796.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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