EWM28817.1, cds1857 (CDS) Nannochloropsis gaditana

Overview
NameEWM28817.1
Unique Namecds1857
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:315559..319146 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28817.1
Productexosome component 10
Orig transcript idgnl|cribi|Naga_100002g165.4936.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:315559..319146 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0044237cellular metabolic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like
IPR012337RNaseH-like_dom
IPR0025623'-5'_exonuclease_dom
IPR002121HRDC_dom
Homology
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|585111240|gb|EWM28817.1| (exosome component 10 [Nannochloropsis gaditana])

HSP 1 Score: 2446 bits (6338), Expect = 0.000e+0
Identity = 1195/1195 (100.00%), Postives = 1195/1195 (100.00%), Query Frame = 0
Query:    1 MATLDELLFHQPQPRMGIDDISVENSGGGGIFLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRPCPHGDGKSVEGGNASEIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAGKKEGEEEDKARVFSAGGGESSLGDGGTQRRVNTRTSESKATATTVHADAEKTPLSDYAFPVYVPAPLEDSLSQERVSSTIHPPPTLPLPPVLNTEELYLSAGWTVASDGLQSMTPVSTGAGREGVRAGVVAATGNEGLESHRGLQHSIGLSVRVRSSNVEEASAPTLQAGVEEREGGREGGGKCTEGDAQGPYATALDPLAGARALLRKEQGLPPVNNAEVDFDGDSEEEEEEKGECEEEGEADEEAMPRSIADIYRISNRNRRRNKEKKRQQDTRSEMSAGADGGAGEGVEGPARLGTTRSSSPTPGDTSLSLPLDPELHEYFGDALDNAPSPVPLSHEGVSVLTNKRTRPEDTEEIVKFMSSIGWVDANAPALPSSSRAVALPEQFLPHRQALLQSQVQPPNPHTGAHQPQQDPYHCRRGTLNHDTQHAQFEAPRLKGDGGEGDHGGFGLPPPDSAAWSRQQHLWPEQPPYVQQQQCGGRGRGSKTVGPPRGALVDGTGAGGVRGRDGLSSTQNFHINKAAVESSRGPHGAPSPPSYNASSINTKAYPHQQALRQPMESSSRPPSLAPPIGLNLNTQQKLRSQQLRYQEHRQQHQPQHQQHLPPQQFHK 1195
            MATLDELLFHQPQPRMGIDDISVENSGGGGIFLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRPCPHGDGKSVEGGNASEIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAGKKEGEEEDKARVFSAGGGESSLGDGGTQRRVNTRTSESKATATTVHADAEKTPLSDYAFPVYVPAPLEDSLSQERVSSTIHPPPTLPLPPVLNTEELYLSAGWTVASDGLQSMTPVSTGAGREGVRAGVVAATGNEGLESHRGLQHSIGLSVRVRSSNVEEASAPTLQAGVEEREGGREGGGKCTEGDAQGPYATALDPLAGARALLRKEQGLPPVNNAEVDFDGDSEEEEEEKGECEEEGEADEEAMPRSIADIYRISNRNRRRNKEKKRQQDTRSEMSAGADGGAGEGVEGPARLGTTRSSSPTPGDTSLSLPLDPELHEYFGDALDNAPSPVPLSHEGVSVLTNKRTRPEDTEEIVKFMSSIGWVDANAPALPSSSRAVALPEQFLPHRQALLQSQVQPPNPHTGAHQPQQDPYHCRRGTLNHDTQHAQFEAPRLKGDGGEGDHGGFGLPPPDSAAWSRQQHLWPEQPPYVQQQQCGGRGRGSKTVGPPRGALVDGTGAGGVRGRDGLSSTQNFHINKAAVESSRGPHGAPSPPSYNASSINTKAYPHQQALRQPMESSSRPPSLAPPIGLNLNTQQKLRSQQLRYQEHRQQHQPQHQQHLPPQQFHK
Sbjct:    1 MATLDELLFHQPQPRMGIDDISVENSGGGGIFLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRPCPHGDGKSVEGGNASEIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAGKKEGEEEDKARVFSAGGGESSLGDGGTQRRVNTRTSESKATATTVHADAEKTPLSDYAFPVYVPAPLEDSLSQERVSSTIHPPPTLPLPPVLNTEELYLSAGWTVASDGLQSMTPVSTGAGREGVRAGVVAATGNEGLESHRGLQHSIGLSVRVRSSNVEEASAPTLQAGVEEREGGREGGGKCTEGDAQGPYATALDPLAGARALLRKEQGLPPVNNAEVDFDGDSEEEEEEKGECEEEGEADEEAMPRSIADIYRISNRNRRRNKEKKRQQDTRSEMSAGADGGAGEGVEGPARLGTTRSSSPTPGDTSLSLPLDPELHEYFGDALDNAPSPVPLSHEGVSVLTNKRTRPEDTEEIVKFMSSIGWVDANAPALPSSSRAVALPEQFLPHRQALLQSQVQPPNPHTGAHQPQQDPYHCRRGTLNHDTQHAQFEAPRLKGDGGEGDHGGFGLPPPDSAAWSRQQHLWPEQPPYVQQQQCGGRGRGSKTVGPPRGALVDGTGAGGVRGRDGLSSTQNFHINKAAVESSRGPHGAPSPPSYNASSINTKAYPHQQALRQPMESSSRPPSLAPPIGLNLNTQQKLRSQQLRYQEHRQQHQPQHQQHLPPQQFHK 1195          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|675384540|gb|KFM77437.1| (Exosome component 10, partial [Stegodyphus mimosarum])

HSP 1 Score: 310.457 bits (794), Expect = 4.576e-87
Identity = 197/568 (34.68%), Postives = 305/568 (53.70%), Query Frame = 0
Query:   32 FLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTA---KRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRPCPHGDGKSVE--------GGNASEIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGRIQEVL----EGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAG 584
            + ++  +S++  TRAS  +PA G        DF ++++ +  F    +   +  L+L+  L+      G +++ +  + EE+  L+  +++V               +LD+V   L  A   K+ E E I     Q     + + W + ++   +  Q+   Y  + ++  +I +PQ AF+D+IDN   + F P       S++         GN  E  HP E EI  F  +   LQ   E ++  PL   E +P   V + E L+ M   +++       K  AVDLE HS RSFQG  CLMQISTRE+D+++D L LR E+  +L+++FT+  +LK+FHGA+ DI WLQRDFGLYVVNLFDT  AA+ LH    SL+YLL+HY    LDK++QLADWR+RP+P +ML YAREDTHYLL+++DCL+ DL      ++ +L    E S+ + L RY+K  F  + Y  L +  ++    +            Q   LK L+ WRD++ARE DES  YV P+ +LL++A+  P  + G+  C      +PPLV  ++ ++  +V  A 
Sbjct:   24 YYQDALRSILTATRASCDLPAAG-------VDFDYYSSFNG-FKAFLIREGQSILSLMTCLIQ---SQGIREKFQGSELEEKFDLLTEVNNV---------------ILDNVSTNLDEASGLKKSEEELILAVKPQSS---INTSWNK-KQFNSSCPQS---YKLLTAK--NISRPQLAFKDKIDNTN-SIFVPIIKEKPNSIKPLAIILEKDGNREEFCHPYELEIEKFEPAEEHLQ-SVEPELPKPL---EETPFIFVKTEEQLKHMCDDLKKS------KEFAVDLEHHSYRSFQGFACLMQISTREKDYVIDVLELRGELH-ILNEVFTNPKILKVFHGADMDILWLQRDFGLYVVNLFDTGQAARVLHFAHLSLSYLLKHYYRKDLDKKFQLADWRIRPIPPEMLKYAREDTHYLLYIYDCLKNDLISNGNEMKNLLLSTFERSKMICLKRYQKPVFSDDKYLELYKKSKKTFNAK------------QLYCLKELFAWRDKIARENDESLAYVLPNHMLLQVAEALPREQQGILACCN---PIPPLVKQQLNELHSIVLKAN 529          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|1009599395|ref|XP_015928084.1| (exosome component 10-like [Parasteatoda tepidariorum])

HSP 1 Score: 309.301 bits (791), Expect = 1.721e-86
Identity = 164/397 (41.31%), Postives = 238/397 (59.95%), Query Frame = 0
Query:  200 DIPKPQHAFQDEIDNRRETCFRPCPHGDGKSVE--------GGNASEIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGRIQEVL----EGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAG 584
            +I +PQ  F+D+IDN   T F P       S++          +  E  HP E EI  F+     LQ   E ++  P SL E +P   V +   L+EM Q ++       EK IAVDLE HS RSFQG  CLMQIS+R +D++VD LALR ++ P+L+D+FTD  ++K+ HGA+ DI WLQRDFG+YVVN+FDT  AA+ LH    SL+YLL+HY  + +DK++QLADWR+RPLPE+M+ YAREDTHYLL+++DCL+ DL  +   ++ +L    E S+++ L +Y+K  F  + +  L +  R+    +            Q   LK +Y WRDR+ARE DES  YV P+ +LL++A+  P  + G+  C      +PPLV  ++ ++  ++  A 
Sbjct:  161 NISRPQLLFKDKIDNSN-TIFVPVIKEKPNSIKPLAITLEKNEDKEEFCHPYELEIEKFSPEEEHLQ---EAELVFPKSL-EDTPYMFVDTEMQLKEMCQELK------IEKEIAVDLEHHSYRSFQGFTCLMQISSRSKDYIVDVLALRSQL-PVLNDIFTDPKIVKVLHGADMDILWLQRDFGVYVVNMFDTGQAARVLHFAHLSLSYLLKHYCKLDVDKKFQLADWRIRPLPEEMIKYAREDTHYLLYVYDCLKNDLINQGNEMKNLLHSTFERSKSICLKKYQKPLFSDDKFMELYKKSRKMFNGK------------QLYCLKEIYSWRDRMAREYDESLLYVLPNHMLLQIAEALPREQQGILACCN---PIPPLVKQQLNELHSIILKAN 530          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|299473136|emb|CBN78712.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 316.235 bits (809), Expect = 3.624e-86
Identity = 207/613 (33.77%), Postives = 315/613 (51.39%), Query Frame = 0
Query:   32 FLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRP-------------------CPHGDGKSVEGGNASEI----------PHPCETEIRNFTYSTWQLQVPAENDMQVPLSL-----QESSPAGLVASPEALREMVQSIREELE----------------------------KEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQG--RIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVV 580
            F++ LF+SL+ GTRASNAIP G G       D+A++A T   F  ++    K+ L +++  ++++ + G             E  +  + D  DP+ F  +AD++E LL+ V+ +L            EA  +  N+++A    +L+ +A AAR   ++Y +M+S  +D+PKPQ AFQ+EIDN R+T F P                        G  +EG     +          PHP E EIR F Y   Q++ P ++ +  P+ L      ++  A  V + EAL  M+  I  +                              +E  + IAVDLE HS R+F G+VCLMQ+STRE+D++VD L LR E+G LL  +F+D  ++K+FHG++SD+ WLQRD GLY+VN+FDT  AA+ L +P   LA+LL+ +   V DK++QL+DWR+RPLP  ML                   DL R  G   ++ VL+ S+ + L R+ K  F  +G+  +L+        +G  G       V R  L AL+ WRD +AR EDES GYV    +++R+A+  P +R  ++ C   G+ LP LV    ED+L++V
Sbjct:   31 FVRQLFESLLLGTRASNAIPDGEG-----QEDYAYNA-TFPEFRSRAEGCGKQVLEVIQIFLNHVSQEG-------------ELGLPEVGDAGDPEVFQGIADVVETLLEDVDSYLD-----------EAAGKGANQQVALMRHQLKTVASAARSGPAKYASMVSNVVDMPKPQEAFQEEIDNSRDTPFVPKLREKPNAVTPLDLAPISTLSTSMGMELEGRAEDSMSGSGLLDFHYPHPYEVEIRAFHYMPAQVKAPLDSQLVRPVPLVGDEGHKAPAATFVDTVEALDSMISDILGDGAPGGGGGGGGGGGGSSSGSDDEGGGGGPAREACREIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGEMGRLL-PVFSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMFDTGQAARQLGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLPADMLLI-----------------DLERSGGDVAVKAVLDASREICLRRFEKPAFQEKGWSEVLK-------RQGGNGVLDDFGDVPRRVLSALWSWRDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGC---GNPLPRLVQQHAEDILEIV 585          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|1005948927|ref|XP_015782781.1| (PREDICTED: exosome component 10-like [Tetranychus urticae])

HSP 1 Score: 301.982 bits (772), Expect = 1.476e-85
Identity = 176/476 (36.97%), Postives = 275/476 (57.77%), Query Frame = 0
Query:  127 DAFGNLADLIEDLLDHVEYFLSTA---KRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTL---DIPKPQHAFQDEIDNR----------RETCFRPCPHGDGKSVEGGNASEIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQ---GRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAA 583
            D F  L DL + ++D + + L  A   K+ + E I    +  +N  +A    R + M+  A Q   R   M+   L   +I +PQ  F+D+IDN+          +    RP      K  EG   +   HP ETE+  +   T  + +P    + +P+ L+E +    V     L++++Q ++      + K +A+DLEAHS RSFQG  CL+QISTR  D+++D L LR E+  +L+++FTD  ++K+FHGA+SDI+WLQRDF +YVV LFDT  AA+AL++   SLAYLL+HY  + ++K YQLADWR+RP+P+ ML+YAREDTHYLL+++D +R++L  +      I++V + S+ V L +Y K  F PEG+  +L   +R T           L P Q   LK +Y WRD++AR EDES GY+ P+ ++L+++ V P  + G+  C      +PP+V  ++ ++  ++  A
Sbjct:   84 DKFDALCDLNDVIMDRINHSLDEAEGLKKKDQELIVATLNVSKNTAVAISQQRTQWMSNQA-QGVKRKRDMVVNLLTAKNIHRPQAKFKDKIDNKSCPFVPSLKEKPNSIRPLAIYMEKDEEGEEHA--CHPYETELEKWE-PTSDMLIPISEPI-LPVELKEEN-FHFVDDSVKLKDLMQILK------NVKELAIDLEAHSYRSFQGFTCLIQISTRTDDYIIDALELRNELS-ILNEVFTDPKIIKVFHGADSDIQWLQRDFSVYVVGLFDTGQAAKALNLSHNSLAYLLKHYCNLDVNKVYQLADWRIRPIPQDMLNYAREDTHYLLYIYDTMRKELLDKDPSGKLIKQVFDASREVCLKKYEKPLFKPEGFNMIL---KRST---------ASLNPRQLYALKEIYAWRDKLARLEDESTGYILPNHMMLQISDVLPREQQGILACCN---PIPPIVKQQLNELHHIILKA 531          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|672819071|gb|KFH63970.1| (hypothetical protein MVEG_09795 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 302.368 bits (773), Expect = 5.814e-84
Identity = 213/626 (34.03%), Postives = 319/626 (50.96%), Query Frame = 0
Query:   35 NLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNR-----RETCFRPCPHGD-GKSVEGGNASEI---PHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGRE-----QGRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQV-----------VGAAGKKEGEEEDKARVFSAGGGESSLGDGGTQRRVNTRTSESKATATTVHADAEK 635
             LF +L++ T+A+NAI AG         D +F+ +   +FA    D S  +L +   L+       G+  + + +      +I+  DD+ D   F  ++D+I++LL+ V+  +   K    +G   A                      A+     Y  + +Q   I +PQ  F D +DN      R+   +P    D    +E  ++ E+   PHP E EI++  Y T   +   E  +  P    +S+ A  V + EAL++M  ++  E+++E    IA+DLE H+ RSFQG VCLMQ+STR++DFLVDTL LR  +  LL+  FTD  ++K+FHGAESDI WLQRDFG+Y+VN+FDT+ A++ L +   SLA+LL+ Y     DK+YQLADWR+RPLPE+M  YAR DTH+LL+++D +R DL  +        +   L+ S   +L ++ KE +D E      +GP  W     +  R   L   Q    KAL+ WRD++AR+EDES  YV P+ +L  LA+  P    GV   +G  + +PP V     DM  +           VG   K E +E    R F A  G     + GT+      T  ++A A T+ A   K
Sbjct:   15 TLFSTLVKATKAANAISAG---------DVSFYRSLDRSFASNMDDASSASLDMCNSLL-------GQASNSTSE------IISDADDMRD--RFDIISDVIDNLLEKVDVAMDEMKAPRKKGANSAQSAP--------------TVALAKTDKLEYKLLHAQ--HIVRPQLRFADPVDNSNTPFVRKIAVKPNAQVDLTYGLEKTDSPELTSQPHPYEYEIKHLEYPTHMFEERPEQ-LYNPF---DSTTAIWVDTVEALKDMCTTL--EMQRE----IAIDLEHHNYRSFQGFVCLMQVSTRDQDFLVDTLELRDSLH-LLNQAFTDPKIVKVFHGAESDIIWLQRDFGVYIVNMFDTYHASKLLDLGTHSLAFLLERYANFHADKKYQLADWRIRPLPEEMFKYARADTHFLLYIYDRMRNDLLAKSNPTTHNLLHATLQRSSETALKKHEKEIYDAEEG----EGPNGWRNMYTKWNR--SLNNQQFAVFKALHAWRDQMARDEDESLRYVLPNHMLFTLAEKMPTESTGV---LGCCNPVPPPVRMSASDMAMLIARVKLTIPTTVGGFHKVEIKEPVHVR-FDASTGLQPTNENGTE-----ETGTTEAPAPTIAASQAK 574          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|1043299919|gb|OBZ84967.1| (Exosome complex exonuclease rrp6 [Choanephora cucurbitarum])

HSP 1 Score: 295.434 bits (755), Expect = 2.314e-83
Identity = 199/556 (35.79%), Postives = 288/556 (51.80%), Query Frame = 0
Query:   32 FLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTS-KETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVED-PDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCF-RPCPHGDGKSVEGGNAS-----EIPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDL---GREQGRIQEV-LEGSQAVSLLRYRKETFD------PEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLV 569
            F  +LFKSL+  T A+N+I            +  F+ +    FA K LD +   TL+L   L+ +    G  D             +   DD++D  + +G++ D+ + LL+  +  L        + +   G Q+E K+   E  ++         T  + +       ++ +PQ  F+D +DN   T F R   +     V   N S      +PHP   EI +  Y     Q P E ++  P    ES+    V   E L EM++++      E ++ IAVDLE H+ RS+QG  CLMQISTR++DF+VDTL LR ++  +L++ F D  + K+ HGAESDI WLQRDFGLY+VNLFDT+   + L  P  SLAYLL+ Y     DK+YQLADWR+RPLPE+ML+YAR DTH+LL+++DCLR +L      +G +  V L+ S  V+L +Y KE +D      P G+  +L    +W         +  L P Q    KAL+ WRD  AREEDES  YV P+ +L+ L +  P    GV   +G  +  P LV
Sbjct:   57 FQTSLFKSLVSATAAANSI---------SVEEIGFYRSLDRQFA-KDLDLAGSSTLSLGNSLLQH----GAADCG---------IFVKSFDDIDDVSERYGSVIDVCDSLLEKADLCL--------DQMSGKGKQDELKQNTPEVTQI--------ATKDKLDYKFLHANNVVRPQMKFKDAVDNSNSTPFERKIKYKPHSLVPLDNVSTAEDKSLPHPYVYEINHIEYPDRMFQ-PTEPELYKPF---ESTSIVWVDKEETLMEMLKNL------EGQEEIAVDLEHHNYRSYQGFTCLMQISTRDQDFVVDTLELRDKLW-MLNEYFADPNITKVLHGAESDIIWLQRDFGLYIVNLFDTYFPTKVLDFPHHSLAYLLKKYCNFDADKKYQLADWRIRPLPEEMLNYARSDTHFLLYIYDCLRNELLANSPSEGSLMRVCLQRSNEVALQKYEKEVYDAVHGLGPGGWKHMLT---KW---------KYALNPQQLAVFKALHSWRDHTAREEDESVRYVLPNHMLMTLVERMPTDSSGV---IGCCNPCPTLV 547          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|443695610|gb|ELT96477.1| (hypothetical protein CAPTEDRAFT_99256, partial [Capitella teleta])

HSP 1 Score: 291.582 bits (745), Expect = 4.565e-82
Identity = 195/611 (31.91%), Postives = 305/611 (49.92%), Query Frame = 0
Query:   32 FLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRPCPHGDGKSVEGGNASE---------------IPHPCETEIRNFTYSTWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRR---DLGREQGRIQ-EVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAGKKEGEEEDKARVFSAGGGESSLGDGGTQRRVNTRTSESK 623
             L++  + L+  TR SN +P  G        DF ++++  S      ++ S+  L L++Q++ Y    G K    S  E   +         +D D F  L D  + +++    +L  A                 K ++  W +        + T S  +  L    +I +PQ  F+D+IDN     F P       +++   AS                 PHP + E+ +F  +  QL+   + + Q PL + + +P  +V + E LR++   + +       K IAVD+E HS RSF GL CL+QISTR  DFLVD LALR  +  LL+++FTD  ++K+FHGAE DI WLQRD G+YVVN+FDTF AA+AL +P+ SLA+LL  Y  V  DK++Q+ADWR+RPLPE+++HYAREDTHYLL++HD L+    D G E   +   VL+ S  V   RY K     + +  +++  R+W   +            Q + LK +Y WRD   R +DES GYV P+ ++L +A+  P    G+  C      +PPLV   + ++  ++  A K E  + + + + S    E  +     ++    + +E +
Sbjct:    2 LLQDALQKLMLATRNSNELPNAGD-------DFDYYSSFESFRHVMDMEASR-ILQLMQQIIRY---HGAKGSIHSGNENTMQ---------QDEDRFDTLVDANDQIMERAGTYLDEASGVRKTETPLVVASMTPKAISGSWNK-----QMTKITESSRSFHLLSAKNIQRPQGKFKDKIDNTNRP-FIPIIKEKPNAMKSLEASRWVLFPLSNLISLRFSYPHPYQYELDHFEPTPEQLK---KVEPQTPLPI-DDTPISMVDTEEDLRDLCAMLSQV------KEIAVDVEHHSYRSFLGLTCLLQISTRTHDFLVDALALREHLH-LLNNVFTDPGIVKVFHGAEQDIHWLQRDLGVYVVNMFDTFHAAKALGLPRLSLAHLLTTYCSVKPDKKFQMADWRIRPLPEQLVHYAREDTHYLLYVHDLLKNQLLDAGNEAANLLCSVLDSSTGVCKARYVKPILSSDSHLVIMKKARKWFNSQ------------QMQALKEMYAWRDGCGRVDDESTGYVLPNHMMLNIAENLPKEPAGILACCN---PIPPLVRRNLNELAMIIAEARKAELVKVNDSSLLSISHFERIISQPTQEKSAKLQPTEKR 560          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|384501951|gb|EIE92442.1| (hypothetical protein RO3G_16964 [Rhizopus delemar RA 99-880])

HSP 1 Score: 288.115 bits (736), Expect = 4.075e-81
Identity = 197/613 (32.14%), Postives = 314/613 (51.22%), Query Frame = 0
Query:   35 NLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAK---RGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCF------RP---CPHGDGKSVEGGNASEIPHPCETEIRNFTY--STWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGR----IQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLV------------GARMEDMLQVVGAAGKKEGEEEDKARVFSAGGGESSLGDGGTQRRVNT 617
            +LFKSL+  T A N+IP G         D  +  +   +FA +    +   L L   L++      G +   S ++         +DDV     +G++ D+ + LLD  +  L   K   + E E ++ A +  +  K  +E+  L          A++          + +PQ  F+D +DN   T F      +P    P  D   +E G    +PHP   EI++  Y  + +Q++ P + +   P    +++    V +   L EM++++      ED + IAVDLE H+ RS+QG  CLMQ+STR +DF++DTL LR ++  L ++ F D T++K+ HGA+SD+ WLQRDFGLY+VNLFDT+   + L  P   LAYLL+ Y     DK+YQLADWR+RPLP++ML YAR DTH+LL+++DCLR +L          +Q  L+ S  V+L +Y K+ +D +G G    GP  W     +   +  +   Q    KA++ WRD  AR+EDES  YV P+ +L  L +  P    GV   +G+ +  PPLV             ARM+ +L    A   KE ++ ++++V +     +++ +   +R+++ 
Sbjct:   19 SLFKSLVSATAAVNSIPVG---------DVGYFRSLDRSFAKELDQATASALYLGNSLLEQCTLDAGIEASTSFED---------VDDV--VRGYGSVIDVCDSLLDKADICLDHLKGKVKNEDELMQAAPEVTQITKENTEYKFLH---------ANK----------VIRPQMKFKDPVDNSNSTPFERKIKYKPHAQVPLDDTPVIENGIQKSLPHPYTYEIQHVEYPENMFQIREPKQYE---PF---DNTSYIWVDTEAGLEEMMKAL------EDVEEIAVDLEHHNYRSYQGFTCLMQLSTRNQDFIIDTLELRDKLWRL-NEYFADPTIVKVLHGADSDVIWLQRDFGLYLVNLFDTYFPTKVLEFPHHGLAYLLKRYCNYDADKKYQLADWRIRPLPQEMLMYARADTHFLLYIYDCLRNELLSASSHGANLMQNCLQRSNEVALQKYDKDIYDAQG-GL---GPFGWKNMLSKW--KYSMNAQQLAVFKAIHAWRDHTARDEDESVRYVLPNHMLFALVERMPTESSGV---IGACNPCPPLVRMNAQALGLLIQKARMDALLAPPTADEVKETKQVEQSKVIN-----NTITNQNMKRKISN 565          
BLAST of EWM28817.1 vs. NCBI_GenBank
Match: gi|992077310|ref|XP_015402196.1| (exosome component 3'-5' exonuclease [Aspergillus nomius NRRL 13137] >gi|910289263|gb|KNG81273.1| exosome component 3'-5' exonuclease [Aspergillus nomius NRRL 13137])

HSP 1 Score: 291.967 bits (746), Expect = 5.952e-81
Identity = 203/572 (35.49%), Postives = 298/572 (52.10%), Query Frame = 0
Query:   32 FLKNLFKSLIQGTRASNAIPAGGGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIKTGGKDQDESKQEEEEEALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQTASRYNTMLSQ-TLDIPKPQHAFQDEIDNRRETCFRPC----PHGD---GKSVEGGN-ASEIPHPCETEIRNFTY--STWQLQVPAENDMQVPLSLQESSPAGLVASPEALREMVQSIREELEKEDEKAIAVDLEAHSLRSFQGLVCLMQISTRERDFLVDTLALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGR----EQGRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAGKKEG 588
            F + L  SL+Q TR          +G   A D +FH  +S+  ++   + S   L+L   L+     T G D      ++E        D +ED   +  + D+I+ LL+  +  L      E  G+ +     + ++ A +         A ++T S++ T+       IPKPQ  F+ ++DN   + F+P     PH      KSVE  + A+   +P ETEIR   Y  ST+ +  P      VP    ES+ A  V + E ++EM++ ++        K IA+DLE H + S+QGLV LMQISTR++D++VDTL   RE   +L+++F D ++LK+ HG+  DI WLQRD GLYVV +FDT+ AA AL+ PK+SL +LLQ +V    DK+YQ+ADWR+RP+PE M  YAR DTHYLLH+ D LR +L +    +   I  VLE S+  +L RY +  +D        QGP  W            L+  Q    KA++ WRD VAREEDE    V P  +L ++A   PL  G +   +   S + P+   R  D+L+V+  A K EG
Sbjct:   10 FQQRLTSSLVQMTRT---------VGQLSAEDLSFHRTSSAELSESIDEQSGRILSLTSSLLK--AATAGTDLPAPTLQDE--------DSIED--NWRGVVDVIDALLERADACL-----DEFTGVIKRLSPSQQEQSAEK---------ATKKTTSKFPTIYDYGPSKIPKPQLHFERQVDNADASTFKPLLRTKPHAVVPLEKSVESSDPATGFRNPYETEIRAAKYPESTYAVSSP------VPYQPWESTTATFVDTLEGVKEMLKELKSA------KEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELNQNSTPDNNLIDYVLEKSKDEALQRYERSPYD----AATGQGPGGWYDYLSRNP--AVLSKEQFAVFKAVHQWRDAVAREEDEGVQCVFPKHILFKVAHTMPLDLGTLFRTL---SPVTPIAKDRAADLLEVIKNA-KIEG 524          
The following BLAST results are available for this feature:
BLAST of EWM28817.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111240|gb|EWM28817.1|0.000e+0100.00exosome component 10 [Nannochloropsis gaditana][more]
gi|675384540|gb|KFM77437.1|4.576e-8734.68Exosome component 10, partial [Stegodyphus mimosar... [more]
gi|1009599395|ref|XP_015928084.1|1.721e-8641.31exosome component 10-like [Parasteatoda tepidarior... [more]
gi|299473136|emb|CBN78712.1|3.624e-8633.77conserved unknown protein [Ectocarpus siliculosus][more]
gi|1005948927|ref|XP_015782781.1|1.476e-8536.97PREDICTED: exosome component 10-like [Tetranychus ... [more]
gi|672819071|gb|KFH63970.1|5.814e-8434.03hypothetical protein MVEG_09795 [Mortierella verti... [more]
gi|1043299919|gb|OBZ84967.1|2.314e-8335.79Exosome complex exonuclease rrp6 [Choanephora cucu... [more]
gi|443695610|gb|ELT96477.1|4.565e-8231.91hypothetical protein CAPTEDRAFT_99256, partial [Ca... [more]
gi|384501951|gb|EIE92442.1|4.075e-8132.14hypothetical protein RO3G_16964 [Rhizopus delemar ... [more]
gi|992077310|ref|XP_015402196.1|5.952e-8135.49exosome component 3'-5' exonuclease [Aspergillus n... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1862rna1862Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications