rna1835, rna1835 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1835
Unique Name	rna1835
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2070
Alignment location	CM002458.1:260752..262407 +

Link to JBrowse

Properties


Property Name	Value
Product	cysteine proteinase
Orig transcript id	gnl\|cribi\|Naga_100402g1.3863.mrna
Orig protein id	gnl\|cribi\|Naga_100402g1.3863
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:260752..262407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100402g1	gene1761	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1835	rna1835-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28848.1	cds1831	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:260752..262407+
coding sequence from alignment at CM002458.1:260752..262407+

mRNA sequence

>rna1835 ID=rna1835|Name=rna1835|organism=Nannochloropsis gaditana|type=mRNA|length=2070bp
GGCGGTGCACCTTCGCGAACACAATGCAAATTGTCAACACTCTTTCCTCA
ACGATACACAATGAAAGGCACAGGCATGCCGAGCAAAACCACACACATGG
ATGGCGCTGCTGGGATGCACCATGTCGCGGCCAAGACGCAAAAACGCCAC
TTTAAGGAGCCGCCAGTGGTCGTCAAAGAAATCATCGCACAAAGTATCAC
CACCCATGCCAGAGAGGCGCGTAAAACAGTAAATTCGCAGACAAGTAAGT
CCACGTCGTCGGCGGCCACGCCCAAGAAGCTTGGTGCTCCCGCTGTTTCT
CGTCACCACCCACTCCCCAAGGCCAGCGTGGTTCGGACGCCCGTCCAACA
GCCTACACCGAGACCTCCCCACCGACAGACCCCTCAAGAATTAGAGGAGG
AAGAAGTCGACGAAACGATTACCCATCTCGCAGTGGTACCTTCCCGTGAA
ACGCGTCAGACGCGCGTTCAATCGTCAGGATCTTCCAAAGAAACAGAGGC
TCAGGGCAGTGGATGCAAAAAGGAGAGCCTTGGTTCCATTGCGGCTGCAC
AAAACGCCCTACTGGAAGGTAAGTTGCAGCGTCAAGCGGCACGCCAAGCC
ACCAACGCATCTTCATTGAGTATCTCCGAATCGAACGGGCCCGGTCAGTC
TCCCTGGACGGCCAAGGCCTTCGGGAGACCCCGCCGGAGAGCGGGAAGGA
AAAAGGTGGAGGCCCCCTCAGCCGCCAAGGAGAACGTGATCCTGTTTCCC
TGCCCGCCTACGCCTGAGATCAGAAAGGGCCGGAACAAGGGTCTGCCGTC
GAGAAAGGAGGCAGGCAAGGCGGGTGCGGCCGCGGGGGCTCCCAGGCCCC
CGACCGCTCTGGCACTTGCTTCCTCACAAGCAACGCCAGCCGGCAAGACT
AAAGGGCGTGAAAAGGATCTGACGCCGCCAACGAGCCGATCGTCCTGTGT
TGGGACTGTCCTGTCGCCCAGCGTTCCATCCACCGCGGTGAAGACCCCGT
CCATAGCCAAAGGAACACCTCCCCCCCACCCTACCCCAAGCGCTCTTCCT
CCGGCGGGCAGGACGCGGACGGGCTCGACGGCCCTCAAGGCCAGAAAAGG
CCTGGTTAAGGCGCAACCTCAGGCGTACGCCCAGACGAGGACTCCTCCAA
ACACGGATAGCGGCAGCACTGGCAAAACCGGCAACGGGAGACAACTTCGC
CAACGCCGAAAGGACGATGCCGAGCAAGGCCGTGATACACAGGCGGCCTC
CCCCGTATCGAGAGTGCTTGTGCCTGAGGAAAACGGAAAATTGACGCGTG
CGAAGGCGCAGGAGAATGAGCGTGCAAACACACTAGCGAAGGAGAGGGAG
GAAGAGCCAAATGAAGAAGAGCATGTCTTTCGAGAACGGGGAAACAAAAC
CAATCGGCGCAAGACCATTTTAAAGCTGATGAAAACGATTAAGGTGGCAC
CGTACATGCCATCTTCTTCCGAAGAAGAGTCGGAGAAAGACGGAGAGGAA
GAAGAGAATGTGTCGCTCTTAAAGGAGGATCCCAAGGCCTATAACGATTG
GATTGCCCATCTTCCCCCCGCGGGGCGGCGGACTTCCAAGGGACTCTCGG
TGGAAGACTGCTTGCGGTAGCTTAGCTTTGGAGGTGGAAGAGAAGAAGGG
AAATGCATTGATCGCTGCTAGTATAAAGGAGGACAGGATATTCTATGTTT
GTGTCCAAATTAGCGATTAATCAAGGGGTTGGTATCGTCCCGGCGACCAC
GACTGGAGGCGATCGGCTCTTCATGGAGTGCGAGGCGAGAGAGGAAGGTG
GGACTAGCGTGCGAAGCGATTTAAAAGCAAACGCCTAGAATCCTTCCCGG
CACAGCATTCTCTGTACGCCTGCCCTAGGGCACATTCGCTTTCGATGGAA
AATCTGAGGGAGCCAACATGTAGAGCCCATGGTCAAGCACATTGCCATGT
GATTGGAAACAAGAGTGCGTAAAGGAGAAATTCGAGATGGAAAGAAAATA
AAAATCATACGTGCAAGGAGGGTAAAAACGGGGGGATTGGTAAAAGAATC
GAATGCACCAGATTTTTATG

protein sequence of rna1835

>rna1835-protein ID=rna1835-protein|Name=rna1835|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MMPSRLKVMITVLLFVTITVTSSVAESDPAPAHDQVRKHKRHRRGWVLLG
HETAAEEWSRFKRYFRKVYHSPSEEEHRFHVFASSLAEARVRNAQNVAAG
GEHVFGVTRFSDETPEEFNRRYKGRKGHGRGVVSGAEVRRPLAYTSALMG
REGQEGGSVEVSRPPQVDWVAAGATTSIGNQGQCGSCWAFSATSQIESAF
ILAGHAPWRLSVQQVTSCTSGGFGCGGGDTIQAYEQLLGMETKTGMPIPG
LVAAAMAPYQQSMYQECLSPLCTERCRLRQIGNLSVAAEMEALTGEGAGA
LGTQGSARTRGREFFFF

mRNA from alignment at CM002458.1:260752..262407+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1835 ID=rna1835|Name=rna1835|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp|location=Sequence derived from alignment at CM002458.1:260752..262407+ (Nannochloropsis gaditana)
TGTTTCTGCGTGTAGCTCATCCGCCAGTTTTTTTCCAAAGCTCTTTTATG
TCCACGGCAGGAGCTTGAACGACCCTTCCGAACAGCAACATGATGCCTTC
ACGCCTCAAGGTGATGATCACCGTGCTCCTGTTCGTCACCATAACCGTGA
CCTCCTCCGTTGCTGAAAGCGACCCGGCCCCTGCTCATGATCAAGTACGA
AAGCATAAGCGGCATCGCCGTGGGTGGGTGCTGCTGGGACATGAGACGGC
TGCGGAGGAATGGAGCCGGTTTAAGCGGTAAGAAACCTGAGGGGTCCATG
GACAAATATCCATCTGCTTCTGCCCAAGCAGGCCTTAAAATGCTAAAATG
TCGGTCGTGCTTACTTAAATTGCTGCCAGACCAGGAAGGGATCATCCGCC
TTTACCCTCGTCCCTCGTAGCTTTTCTACATCTCTTGATCGCAAAACACT
CACTTGCAGGGATGCTCATGACTGAAGAAGACGCTTTACGCTTCTCATGC
CCTCACATTCGTACCAATTCGTTCCTGACAGATATTTCCGTAAAGTGTAC
CATTCGCCATCGGAAGAAGAGCACCGCTTCCATGtattcgcctcctcttt
aGCCGAGGCCCGGGTCCGCAACGCGCAAAACGTGGCGGCCGGCGGGGAGC
ATGTCTTCGGTGTGACGCGTTTTTCGGATGAGACCCCCGAAGAGTTCAAC
AGACGGTACAAAGGGCGCAAAGGGCATGGCCGGGGAGTGGTGTcgggggc
ggaggtgcgGCGACCGCTCGCCTACACGTCGGCACtgatgggaagggaag
gacaggagggggggagcgtgGAGGTATCGCGTCCCCCACAGGTGGATTGG
GTGGCAGCGGGGGCAACGACCAGTATTGGAAACCAGGGTCAATGTGGGGT
ACGTGCTTCTGTTGGCAGTTGCCGCAAATTTGGCAAGTGGTGCCCTCATT
TTTCTGCTGGTGGATTTCAGGCCAAAtgctttccctttttcctcactccc
tcgctccctccctccctccctctcgctttctTTGCCCTAACCAATTAATA
CTTTTCTTTTAAAATCCTCTGGATCCGGTCCTTGTTTTCGTGACATGCCC
ACCTTGCATGTGCGTTGCCGGCGTGCGCGGGAGAGACAGACTCCCCAGAG
GGCGAAGTTAAACCGCACCCGTATCTCCCAGCTCTGCCATGCcctcactt
ccctccctccctccctccctcattttctccctcccttggctcCATCCTTC
GCCACAGTCCTGCTgggccttctccgccacttCCCAGATCGAATCCGCCT
TCATCTTGGCCGGGCACGCCCCCTGGCGCCTGTCGGTGCAGCAAGTCACC
TCGTGCACCTCGGGAGGCTTCGGCTGCGGGGGCGGCGACACCATTCAAGC
CTATGAACAGCTGTTGGGGATGGAGACCAAGACAGGCATGCCCATCCCCG
GTTTGGtcgcggcggccatggcccccTACCAGCAGAGCATGTACCAGGag
tgcctttcccccctctgcaCGGAACGGTGCCGGCTTCGGCAGATTGGTAA
TTTGAGCGTGgccgcggagatggaggcatTGACTGGTGAGGGAGCAGGCG
CTTTGGGCACGCAGGGCAGCGcaaggacgcgggggagagagtttttcttt
ttttaa

Coding sequence (CDS) from alignment at CM002458.1:260752..262407+

>rna1835 ID=rna1835|Name=rna1835|organism=Nannochloropsis gaditana|type=CDS|length=2862bp|location=Sequence derived from alignment at CM002458.1:260752..262407+ (Nannochloropsis gaditana)
ATGATGCCTTCACGCCTCAAGGTGATGATCACCGTGCTCCTGTTCGTCAC
CATAACCGTGACCTCCTCCGTTGCTGAAAGCGACCCGGCCCCTGCTCATG
ATCAAGTACGAAAGCATAAGCGGCATCGCCGTGGGTGGGTGCTGCTGGGA
CATGAGACGGCTGCGGAGGAATGGAGCCGGTTTAAGCGATATTTCCGTAA
AGTGTACCATTCGCCATCGGAAGAAGAGCACCGCTTCCATGtattcgcct
cctctttaGCCGAGGCCCGGGTCCGCAACGCGCAAAACGTGGCGGCCGGC
GGGGAGCATGTCTTCGGTGTGACGCGTTTTTCGGATGAGACCCCCGAAGA
GTTCAACAGACGGTACAAAGGGCGCAAAGGGCATGGCCGGGGAGTGGTGT
cgggggcggaggtgcgGCGACCGCTCGCCTACACGTCGGCACtgatggga
agggaaggacaggagggggggagcgtgGAGGTATCGCGTCCCCCACAGGT
GGATTGGGTGGCAGCGGGGGCAACGACCAGTATTGGAAACCAGGGTCAAT
GTGGGTCCTGCTgggccttctccgccacttCCCAGATCGAATCCGCCTTC
ATCTTGGCCGGGCACGCCCCCTGGCGCCTGTCGGTGCAGCAAGTCACCTC
GTGCACCTCGGGAGGCTTCGGCTGCGGGGGCGGCGACACCATTCAAGCCT
ATGAACAGCTGTTGGGGATGGAGACCAAGACAGGCATGCCCATCCCCGGT
TTGGtcgcggcggccatggcccccTACCAGCAGAGCATGTACCAGGagtg
cctttcccccctctgcaCGGAACGGTGCCGGCTTCGGCAGATTGGTAATT
TGAGCGTGgccgcggagatggaggcatTGACTGGTGAGGGAGCAGGCGCT
TTGGGCACGCAGGGCAGCGcaaggacgcgggggagagagtttttcttttt
ttaaATGATGCCTTCACGCCTCAAGGTGATGATCACCGTGCTCCTGTTCG
TCACCATAACCGTGACCTCCTCCGTTGCTGAAAGCGACCCGGCCCCTGCT
CATGATCAAGTACGAAAGCATAAGCGGCATCGCCGTGGGTGGGTGCTGCT
GGGACATGAGACGGCTGCGGAGGAATGGAGCCGGTTTAAGCGATATTTCC
GTAAAGTGTACCATTCGCCATCGGAAGAAGAGCACCGCTTCCATGtattc
gcctcctctttaGCCGAGGCCCGGGTCCGCAACGCGCAAAACGTGGCGGC
CGGCGGGGAGCATGTCTTCGGTGTGACGCGTTTTTCGGATGAGACCCCCG
AAGAGTTCAACAGACGGTACAAAGGGCGCAAAGGGCATGGCCGGGGAGTG
GTGTcgggggcggaggtgcgGCGACCGCTCGCCTACACGTCGGCACtgat
gggaagggaaggacaggagggggggagcgtgGAGGTATCGCGTCCCCCAC
AGGTGGATTGGGTGGCAGCGGGGGCAACGACCAGTATTGGAAACCAGGGT
CAATGTGGGTCCTGCTgggccttctccgccacttCCCAGATCGAATCCGC
CTTCATCTTGGCCGGGCACGCCCCCTGGCGCCTGTCGGTGCAGCAAGTCA
CCTCGTGCACCTCGGGAGGCTTCGGCTGCGGGGGCGGCGACACCATTCAA
GCCTATGAACAGCTGTTGGGGATGGAGACCAAGACAGGCATGCCCATCCC
CGGTTTGGtcgcggcggccatggcccccTACCAGCAGAGCATGTACCAGG
agtgcctttcccccctctgcaCGGAACGGTGCCGGCTTCGGCAGATTGGT
AATTTGAGCGTGgccgcggagatggaggcatTGACTGGTGAGGGAGCAGG
CGCTTTGGGCACGCAGGGCAGCGcaaggacgcgggggagagagtttttct
ttttttaaATGATGCCTTCACGCCTCAAGGTGATGATCACCGTGCTCCTG
TTCGTCACCATAACCGTGACCTCCTCCGTTGCTGAAAGCGACCCGGCCCC
TGCTCATGATCAAGTACGAAAGCATAAGCGGCATCGCCGTGGGTGGGTGC
TGCTGGGACATGAGACGGCTGCGGAGGAATGGAGCCGGTTTAAGCGATAT
TTCCGTAAAGTGTACCATTCGCCATCGGAAGAAGAGCACCGCTTCCATGt
attcgcctcctctttaGCCGAGGCCCGGGTCCGCAACGCGCAAAACGTGG
CGGCCGGCGGGGAGCATGTCTTCGGTGTGACGCGTTTTTCGGATGAGACC
CCCGAAGAGTTCAACAGACGGTACAAAGGGCGCAAAGGGCATGGCCGGGG
AGTGGTGTcgggggcggaggtgcgGCGACCGCTCGCCTACACGTCGGCAC
tgatgggaagggaaggacaggagggggggagcgtgGAGGTATCGCGTCCC
CCACAGGTGGATTGGGTGGCAGCGGGGGCAACGACCAGTATTGGAAACCA
GGGTCAATGTGGGTCCTGCTgggccttctccgccacttCCCAGATCGAAT
CCGCCTTCATCTTGGCCGGGCACGCCCCCTGGCGCCTGTCGGTGCAGCAA
GTCACCTCGTGCACCTCGGGAGGCTTCGGCTGCGGGGGCGGCGACACCAT
TCAAGCCTATGAACAGCTGTTGGGGATGGAGACCAAGACAGGCATGCCCA
TCCCCGGTTTGGtcgcggcggccatggcccccTACCAGCAGAGCATGTAC
CAGGagtgcctttcccccctctgcaCGGAACGGTGCCGGCTTCGGCAGAT
TGGTAATTTGAGCGTGgccgcggagatggaggcatTGACTGGTGAGGGAG
CAGGCGCTTTGGGCACGCAGGGCAGCGcaaggacgcgggggagagagttt
ttctttttttaa

Synonyms

Publications