rna1827, rna1827 (mRNA) Nannochloropsis gaditana

Overview
Namerna1827
Unique Namerna1827
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2004
Alignment locationCM002458.1:244971..245367 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g19.1521.mrna
Orig protein idgnl|cribi|Naga_100133g19.1521
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:244971..245367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100133g19gene1755Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1827rna1827-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28867.1cds1823Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1827 ID=rna1827|Name=rna1827|organism=Nannochloropsis gaditana|type=mRNA|length=2004bp
TTGGAGCCCAATAATAAAGGAGCCGAAGATTTCCCAATCCCTCGTGCTGG
TCAATGTCAAAACAGCCGCCCGGAAAGCCACTGCTGTGGGTGGATGTATG
GGTAAAGGATTGTGAAAAATTCAACGGCTGCGTGAGTAGAAGCGAGTACC
ATTTTGATGCTAGAACGTACTGGCAAAAACTTGAATGGCAAGGTGAAATA
CACCTCGCGCCCGAGCCAGCAGTGTCTGGTTGGGGGAGGGAGGCCCCCGA
ACTGACGCTATCGAACTGGATTCGACTACGAAATGGGGGATAGTGGACAG
ATTGTGTGACGACCACGACGCAATTTAGGCGTTTTCACAAGAAGCATGTG
CAGTAGTAATACTTTCCACCATCATGTGCACGACGATGAGCGAGTCGACC
GTGCAAGGGGCTTGCTCTGCGAAGGGGCCTCATTGCTCGTGCAGACTCAA
GAGAGCACCGATATCATTGACTCCAGCCGACACCTTCAGCAATGTCTAGA
CAAATTTGACTGTGCATTACGCCTCGCTCCACATCTGCGGGCTCATGCGT
GGGAAAGAGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAGCAGCT
GACCAGTTCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAGCCCTT
TCTCTGGCGCTCATTGTGCATCGCCAAGCTCCAAGGATGGAACACCGGCC
TCGCAGTCCTGGATCAGTTCCACGGGTACGACAACAGACTCTGCATGATG
GAGGTGCTTGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTCTTTGA
CTGTGCCTGCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGCGTGCG
CGCTCTTCTTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGTCTCTA
CCCTTGCTGCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACCTACTT
GCAGTCCCTGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCTCCACT
CTATCCATGCTCATGCCCAAGACGGGCGCCGTACCCCTCTCTCCTGTGGC
TTCCCCTCTTCTTCTACCGCGTCGACCGTCTCCTCTCCAGCAGCGTTGGC
TTCGCCCACGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCGCAAGT
ATGATACTCCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAGCCGTT
CTTAGAAGAGCCCTTGTAAAAAATAGTTGTTGAGGGATGGGACTGTCTGG
GCATTTGGCTCAGTGTGTTTTGAGGTGTCTTTTGGGGGATTGTGCGGGAG
GTTGTAGGGGAGACTCAAAAAATAGAGGGCGGAACATGCGTCCTAGACCA
AAAAAATATGACAGGGTGACAGGTTGCTCTCCATTGAGTCGTGGACAAAT
TATGAAATATTCAATTCAAAATACGAGGGAAGCACATAGACAGTGAGGAG
TATGAAGAGAGAAAAATGAGGATGAAAGCAGAGTCAAAAAGAGTAAGACG
TGTGCAAGACTGCAGCTCCGTGCCTCTAGGCACTCAGCCTGACGTCGTAA
TGGAAAGGCATTTCCATTCGTCATGGTAAACAAATCTTCATTGGAAGATC
ACAGTTAGAAGTATGATATTGAAAAGAGTTACAGGCATTCTGCCCGTCTT
CACATTGAACCGGTGTGGTCGATAGTAGCGCGAGAATTGATTGACTTGGT
TGCAGTGACTTGGAGCACCTCGATGCGGCGCGTGTCGCATTTTCCACTCG
GCCGTGGAGGTATTCACGTGTTTTTTGAAAGGGTAGACTTTTTTGCGTGA
GCACCGGCATGTGCTCCGGGGGGGTAAAACTTGATGCTTAAGCGCCGTCG
TGGCCCCCCCAGATAACGATTAGCCTGGTAGCCCAGGTGTACATGTGGAT
GTATGCCGGGGTATATCAGGGTGTACATGCATTGAAAAACGAATAGAAGA
TGATTTGTCCGTCGAACAGCGAAGAAGACAAAAACTTCAGAAACGCAGAG
CACT
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protein sequence of rna1827

>rna1827-protein ID=rna1827-protein|Name=rna1827|organism=Nannochloropsis gaditana|type=polypeptide|length=90bp
MGGTSARCRRLSIPSLSQENITLDQFTHSEKGLQEVAAAYSQTWEPERGN
TSDTGCRRQGYSSPAFWCHLCHDRLVSCMSFIPMTDRGLQ
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mRNA from alignment at CM002458.1:244971..245367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1827 ID=rna1827|Name=rna1827|organism=Nannochloropsis gaditana|type=mRNA|length=397bp|location=Sequence derived from alignment at CM002458.1:244971..245367- (Nannochloropsis gaditana)
ATGGGTGGCACTTCCGCACGATGTAGACGTCTTTCGATTCCCTCTTTGTC
ACAAGAAAACATAACTTTGGACCAGTTCACACACTCTGAGAAGGGTTTAC
AAGAGGTGGCGGCAGCGTGGCAGAGCTCCAAGACCCACTGCACACGATGA
CAGTCTTTCGATAGAGTACACAATGTGCTAGCTGCACCATGGTTGAGATT
TGTAATCCAACGTTGCACAAACCTATACATCTTTCGTAAGATACAGTCAG
ACATGGGAGCCGGAGAGAGGAAATACTTCTGATACAGGCTGTAGACGACA
GGGGTACAGCTCCCCTGCCTTTTGGTGTCATTTATGCCATGACAGGCTGG
TATCGTGCATGTCTTTCATTCCGATGACGGATAGAGGACTACAATAA
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Coding sequence (CDS) from alignment at CM002458.1:244971..245367-

>rna1827 ID=rna1827|Name=rna1827|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002458.1:244971..245367- (Nannochloropsis gaditana)
ATACAGTCAGACATGGGAGCCGGAGAGAGGAAATACTTCTGATACAGGCT
GTAGACGACAGGGGTACAGCTCCCCTGCCTTTTGGTGTCATTTATGCCAT
GACAGGCTGGTATCGTGCATGTCTTTCATTCCGATGACGGATAGAGGACT
ACAATAAATGGGTGGCACTTCCGCACGATGTAGACGTCTTTCGATTCCCT
CTTTGTCACAAGAAAACATAACTTTGGACCAGTTCACACACTCTGAGAAG
GGTTTACAAGAGGTGGCGGCAGCATACAGTCAGACATGGGAGCCGGAGAG
AGGAAATACTTCTGATACAGGCTGTAGACGACAGGGGTACAGCTCCCCTG
CCTTTTGGTGTCATTTATGCCATGACAGGCTGGTATCGTGCATGTCTTTC
ATTCCGATGACGGATAGAGGACTACAATAAATGGGTGGCACTTCCGCACG
ATGTAGACGTCTTTCGATTCCCTCTTTGTCACAAGAAAACATAACTTTGG
ACCAGTTCACACACTCTGAGAAGGGTTTACAAGAGGTGGCGGCAGC
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Synonyms
Publications