EWM28850.1, cds1821 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|585111276|gb|EWM28849.1| (tetratricopeptide repeat-containing protein [Nannochloropsis gaditana] >gi|585111277|gb|EWM28850.1| tetratricopeptide repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0 Query: 1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 295 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC Sbjct: 1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 295
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|553184749|ref|XP_005854140.1| (hypothetical protein NGA_0203900 [Nannochloropsis gaditana CCMP526] >gi|422294917|gb|EKU22217.1| hypothetical protein NGA_0203900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 482.256 bits (1240), Expect = 6.968e-171 Identity = 255/295 (86.44%), Postives = 255/295 (86.44%), Query Frame = 0 Query: 1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 295 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHA CIAKLQGWN GLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC Sbjct: 1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHA---------------------------------------CIAKLQGWNAGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 256
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|585111278|gb|EWM28851.1| (aldo keto reductase, partial [Nannochloropsis gaditana]) HSP 1 Score: 116.701 bits (291), Expect = 1.788e-25 Identity = 83/228 (36.40%), Postives = 116/228 (50.88%), Query Frame = 0 Query: 13 DDE-RVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQ-GWNTGLAVL-DQFHGYDNRLCMMEVLALY--------------KGKTN----LESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHS 219 D+E R++ AR LL G + LV+ L+ L + AL ++P LR+ AWERGF L Y AADQF+ C +DPDD EP+LWR L AK + GW A L D F G+D R+ MM +L+L+ +GK +++V + GD H++ R SFACAL+ EA G L V + GD Y++ +AR H+R + L S Sbjct: 2 DEELRLETARELLARGCAELVRRDAP---------LEPALQLIEAALFISPTLRSCAWERGFALYYKGAWAAAADQFSACCQVDPDDLEPYLWRCLADAKGEGGWEGARAGLHDGFKGHDRRVGMMNILSLFLEEEEEHGVRGSDEEGKEKRLRAVQAVLEYGEGDCHASQRISFACALYLEARGMEEEALAV---LEEVTSRKEDGDVYMREMARNHLRVLGRRLAS 217
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|654351343|ref|WP_027844535.1| (hypothetical protein [Mastigocoleus testarum] >gi|959133454|gb|KST68539.1| hypothetical protein BC008_01345 [Mastigocoleus testarum BC008] >gi|959133471|gb|KST68554.1| hypothetical protein BC008_01420 [Mastigocoleus testarum BC008]) HSP 1 Score: 81.2629 bits (199), Expect = 1.124e-14 Identity = 53/165 (32.12%), Postives = 75/165 (45.45%), Query Frame = 0 Query: 46 HLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACG-DPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIH 209 + + + FD A +L P + + W+RG Y NR E A QF +++ D E +WR LC+A+LQG + L D RL M +V LY G + E V D S + L+FEA R E S + AV + D Y+ LAR+H Sbjct: 44 QVNESIADFDAAEKLKPSITPYLWQRGLSYYYANRFAEGASQFEIDLTVNSQDVEETVWRYLCVARLQGSDEARKSLLSVKN-DPRLVMRKVYELYGGNCSTEDVLKIGNPFDKRSKFYSHLYVGLYFEA-SDRTEEAQSY-ITKAVDSYRI--DDYMWYLARVH 203
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|567202725|ref|XP_006408047.1| (hypothetical protein EUTSA_v10021364mg [Eutrema salsugineum] >gi|557109193|gb|ESQ49500.1| hypothetical protein EUTSA_v10021364mg [Eutrema salsugineum]) HSP 1 Score: 81.6481 bits (200), Expect = 1.662e-14 Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 0 Query: 51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209 + +FD A+ L P +A+ W+RG L YL+R +E A+QF + +P+D E +W LC A+L G + + G D+R M E L+K + E V D + G AS L++EA G + K + T CG D Y+ SLA++H Sbjct: 89 VTEFDRAIVLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEARLHGIDGARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSESAKFHI-------TAACGSPYGQRSDDYMASLAKVH 246
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|727582356|ref|XP_010464092.1| (PREDICTED: uncharacterized protein LOC104744703 [Camelina sativa]) HSP 1 Score: 81.2629 bits (199), Expect = 2.324e-14 Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0 Query: 51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209 + +FD A+ L P +A+ W+RG L YL+R +E A+QF + +P+D E +W LC A+L G + + G D+R M E L+K + E V D + G AS L++EA G K + T CG D Y+ SLA++H Sbjct: 90 VTEFDRAVVLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVKDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHI-------TASCGSPYGQRSDDYMASLAKVH 247
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|727630110|ref|XP_010486019.1| (PREDICTED: uncharacterized protein LOC104764226 [Camelina sativa]) HSP 1 Score: 80.8777 bits (198), Expect = 2.809e-14 Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0 Query: 51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209 + +FD A+ L P +A+ W+RG L YL+R +E A+QF + +P+D E +W LC A+L G + + G D+R M E L+K + E V D + G AS L++EA G K + T CG D Y+ SLA++H Sbjct: 90 VTEFDRAVVLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVKDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHI-------TAACGSPYGQRSDDYMASLAKVH 247
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|727411317|ref|XP_010430058.1| (PREDICTED: uncharacterized protein LOC104714379 [Camelina sativa]) HSP 1 Score: 80.4925 bits (197), Expect = 3.963e-14 Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0 Query: 51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209 + +FD A+ L P +A+ W+RG L YL+R +E A+QF + +P+D E +W LC A+L G + + G D+R M E L+K + E V D + G AS L++EA G K + T CG D Y+ SLA++H Sbjct: 89 VTEFDRAVILDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVKDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHI-------TAACGSPYGQRSDDYMASLAKVH 246
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|30679555|ref|NP_683531.2| (Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >gi|27311659|gb|AAO00795.1| Unknown protein [Arabidopsis thaliana] >gi|30023732|gb|AAP13399.1| At3g05625 [Arabidopsis thaliana] >gi|332640747|gb|AEE74268.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >gi|1032289471|gb|OAP03798.1| hypothetical protein AXX17_AT3G05200 [Arabidopsis thaliana]) HSP 1 Score: 80.1073 bits (196), Expect = 5.240e-14 Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 0 Query: 53 KFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209 +FD A+ L P +A+ W+RG L Y++R +E A+QF + +P+D E +W +C A+L G + + G D+R M E L+K + E V D + G AS L++EA G K L T CG D Y+ SLA++H Sbjct: 91 EFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVARTQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHL-------TAACGSPYGQRSDDYMASLAKVH 246
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|1001609431|gb|KXS13219.1| (hypothetical protein M427DRAFT_156882 [Gonapodya prolifera JEL478]) HSP 1 Score: 77.7962 bits (190), Expect = 1.456e-13 Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 0 Query: 54 FDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFH-GYDNRLCMMEVLALYKGKTNL-ESVFDCACG-DPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG-GDTYLQSLARIHMR 211 FD A+RL P +R W+RG L Y +R ++ A+QFA S +P+D E +W LC++++ +N +A H G D R M V ++ + +++ D A D H + A L++EAH +E L+ ++ T + Y+ +LAR+H R Sbjct: 26 FDDAMRLDPKIRPRLWQRGLSLYYADRFQDGAEQFAIDVSYNPNDTEESVWHFLCLSRM--YNPSVARSRWLHVGQDPRPVMRAVYDVFHNPDAIPQAILDAARDTDGHDSFYAKLYVGLWWEAHEGPTSEGARRFLVESLDTGYGKTSQDYMVALARVHCR 185 The following BLAST results are available for this feature:
BLAST of EWM28850.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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