rna1817, rna1817 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1817
Unique Name	rna1817
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1694
Alignment location	CM002458.1:222942..223822 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100133g8.1515.mrna
Orig protein id	gnl\|cribi\|Naga_100133g8.1515
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:222942..223822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100133g8	gene1746	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28861.1	cds1813	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1817	rna1817-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:222942..223822-
coding sequence from alignment at CM002458.1:222942..223822-

mRNA sequence

>rna1817 ID=rna1817|Name=rna1817|organism=Nannochloropsis gaditana|type=mRNA|length=1694bp
TGTGGCTTTCACAAACTCTAATTTGGAATCCATCCAAGCTGACAATGACA
TGTCCCCTCGACAATTCCAAACGTGACATCCTTACGATTTTCCAGTATCC
TAAGCGAAGGAATAGTGTGTCGATGGCCATGGCGGCGCTCGCTCGAGTCT
CCGCGACTGCGTGTGAGCGACAGGAACCTAGACCTCCTAAAGAATGGACT
GCTGTAAGAGTATGACAACCAGAAGAAGCCAATCACACCACGAGCTCATG
CACGACTGCTTACAGGCGTATCAGAATGATCATTCTGCCAGGATACATGC
ACCCGAAAATTTAAAGTTGATTCTGTCCATTTTTCTTCTACCCTCCCTCC
ATTGCTCTTTTCGGTCACGCAAAAATACAGAAAAGCATATGCCATTGGCA
ACAATAATGTTGCCCGCAGGCCTTGCATCCCTGCTCCTCATGTCAATGGT
CTGCCTGTGTCGCCTTCCTTATTCATTCGCGGTGGAACCTTATTCTGAAG
ACCTGGCTCGCCAAGCTGCTGTTTTCTCTTCCATCGCCTATGGAGATCCG
TTTCTTGTCAGCCAAAACAAATTTTACAACAGCTCCTGCCAGCTTCCTGG
CTTCACCGTTCTACATACATATCAATCCCAGCCGTTGGATCATGATGCCT
TTGGTTACATCGGTGTGGACAAAGAGGAGAAGCTGGTGGTAGTCGCTTTC
AAGGGGAGCAATGACACGGAGGACTATATCACGGATCTAATCGGATCGCT
GCACTATCACTTCTCATGCGTTATCGAAGGCGTAGATTTAGGACACACGC
ACCACGGATTTTGTGCGTTTTATACTTCATTGGTGACGTTGGGGTTGGCG
GAGGAGGTCGCCGCCTTGGCGGCGCGAATGGGAGAGGAGTACACTGTGCT
CGTGACTGGCCACTCTTTGGGTGGCGGGGTGGCATCCCTCTGCGCCGTGG
ACCTGGGCAAGCGCCTGAACGTATCCTCCCTGCTTTATACCTTCGGGGAA
CCCCGTGCCGGGGACGTTGGGTTCGCAACGGCTGTCGCGGAATATACCCG
GGGTAGCTACCGCCTGGTCCACGCCTCGGACTGCGTCCCACATTTGCCGC
CTTGTTGTGGTGGAGTGGATGGGGGGCATTGCGCGGAGGTGGCTGACTGC
CCTTTCCACCATGGGCAAGAAATTTGGTACGACGACGACATGAGCGTGGG
GGCACAATACGTGGCATGTCCCGGGGATGAGGATGAGGATGTGTGTAGCA
ACGGCTCGATAAGCAGCGTGGAGGACCACCATTACTACTTCGGGGAGAGG
CTCGGAACCTGGTGCTGCTTTCCACCGCCTCCGTCCGAGAGGTCTTCTGA
GATGGAGAGAAAGCATACAATGATTGAGCAGAGAATCAAGACCTTGGAGA
GTCATGGTCGAATGTCGAGGAGCGAGGCGGAGAGAACGGGAGTTACAGCT
GTGGTATGATAAATCATATGGTTAAGATGTGTACGAAGGAACTGTGGAAA
GAAGAGGGAGCTCATCGTTTTCTAAAGGAAAAAGAAAAGCCAAGCCGTGT
TCGCTACTCTTCTCAGAATCTTGCGACACTTGTTTTGATACTCGTCCTCC
CAGAGATTCGTCTACGTGTACAGTTATTTGATTCCTTACGGACAAAATGG
TATGAAAAATCGCCTCTTACTTACGTTGGGCGCTCATGATAATT

protein sequence of rna1817

>rna1817-protein ID=rna1817-protein|Name=rna1817|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MQQTPRLPTQHTLHLGGRIGGEGSEAMVMYVREGVAYGPAFTPRVLVGAV
NELLGRETFCEQSAGAVASAAVRGGEIMITVPEIFGMLQSNLTLDKGTGG
ICPTTVGK

mRNA from alignment at CM002458.1:222942..223822-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1817 ID=rna1817|Name=rna1817|organism=Nannochloropsis gaditana|type=mRNA|length=881bp|location=Sequence derived from alignment at CM002458.1:222942..223822- (Nannochloropsis gaditana)
CCTCCCGCGTGCATGTGTCCAAGTCGGGCCCCTGGCCTCCCCAGTCCGTC
ACACCTGCTCCCCTCTCCTCCCCTCCTCCTCCTGAGCCTGGAAACAGACA
GTCTTGGTCAGGGGTGAAGATCCCCGAGGCGTAGGCGAGGAAGGCGGGAC
AGTTGGATTTGACATGGACGGCCAGGGGTCCGAAGAAATAGAGTGCCTTT
TGAAGAAGCTTGTCAGAAGCACAGGGAGGGATGAATGTAGGGCCATAGGC
AAATGCAAAGGCAGGTGTATCACCCAAACATGCGCCTGTGCCAAAGATAG
GAAGGGTCGAAGGGGGTGAAGGAAGCTGACTTTTGAGAAAGTATGCAGCA
GACACCTCGCCTCCCTACCCAACACACCTTGCATTTGGGTGGACGGATAG
GAGGAGAAGGTTCGGAGGCCATGGTCATGTATGTACGAGAAGGCGTCGCT
TACGGTCCCGCCTTCACACCCCGTGTTCTGGTCGGCGCAGTCAACGAGTT
GCTGGGAAGAGAGACTTTTTGTGAACAAAGCGCCGGGGCCGTGGCGAGTG
CTGCCGTCCGTGGTGGTGAAATCATGATTACCGTCCCCGAAATCTTCGGC
ATGCTGCAGAGCAATTTGACCCTCGACAAGGGCACTGGTGGCATATGCCC
AACAACTGTGGGGAAATGAACGCGGGGAAGGCGACTGCGTGGGTGCATGT
TGGAGCAGAGAGAGGTCTGAGGGAGAAGACAAGGTTGAAAAGGAGGATAT
TGTGAGACGGGAGAGGGAGAATTAACCTTTATGTCTACGTACCTCCCGCA
GGTGCCCTGATATTTGACCGATGTGACTGCCACCACGCCGTAGGGATTCG
CGTCGCTATAGCGGTAGTCCAAAGAAGCAGG

Coding sequence (CDS) from alignment at CM002458.1:222942..223822-

>rna1817 ID=rna1817|Name=rna1817|organism=Nannochloropsis gaditana|type=CDS|length=327bp|location=Sequence derived from alignment at CM002458.1:222942..223822- (Nannochloropsis gaditana)
ATGCAGCAGACACCTCGCCTCCCTACCCAACACACCTTGCATTTGGGTGG
ACGGATAGGAGGAGAAGGTTCGGAGGCCATGGTCATGTATGTACGAGAAG
GCGTCGCTTACGGTCCCGCCTTCACACCCCGTGTTCTGGTCGGCGCAGTC
AACGAGTTGCTGGGAAGAGAGACTTTTTGTGAACAAAGCGCCGGGGCCGT
GGCGAGTGCTGCCGTCCGTGGTGGTGAAATCATGATTACCGTCCCCGAAA
TCTTCGGCATGCTGCAGAGCAATTTGACCCTCGACAAGGGCACTGGTGGC
ATATGCCCAACAACTGTGGGGAAATGA

Synonyms

Publications