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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100822g1.2704.mrna |
Orig protein id | gnl|cribi|Naga_100822g1.2704 |
Gbkey | mRNA |
Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002458.1 | supercontig | CM002458.1:102807..105386 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1779 ID=rna1779|Name=rna1779|organism=Nannochloropsis gaditana|type=mRNA|length=1535bp CGTCTTTTTCTTCCAACCTCATGAAGGCCCTGACCCTTCGACTCGCAATA ACCGCCCTCGTCACAGGTGAAGCACGCTGCGTGCTTTATAACCCCTTCCG CTGGCATCAGCCCGGCTTTTCGTCCGTGCAAACGGACACTACCACTCCTA TTCAGCAGTGGTCCTGTCAGTGCAGCCTGGTGCTCTTTCTTACAGGGCAT GGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCGTA ATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAAAGCA GAATGCGATCATGATGAAATAAGAGGAAGACACGGAGGCCACGCAGCTTC CTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCCTC CTGAATCGACACCCAAGAAGATGCGATCGATGCTCCTCCTTCCTCTTTGT CCGCCCCCGCAACAGGCACTACGAGAGGAAGGAAATAACAACGCCAAAGT CAGGGACGAGGACGCCATGATAAAAAGAGAGGGCACGCATTCCTGCGAAG GGAGCTCAGGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGGAACAAGC AGCAGTGCGGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAG CGACGTGGAGGCGTTGAAAGCGCTGGCGGCGTCGCGCGTAGCGACGGGAG GGAAATGGCGGCGCGGAAAGTGGACTCCGGAGGAGGAAGTGTACGTGAAC CGCGTCACCGAGGCCTTCCATCAAGGATTGCTCCCCCTAGCGGCAGGGAC CACACTGCGCTCATACTTGGCAGACAAATTGAACTGCGACCCCATGCGTA TCACCAAGAAGTTCTCGGGCGTGGGCTCGATCGGCAAATGCATCTTCCAT CCCTGCATGCCACCGCAACCACTGAAAATGGCGGAAGCGATGGTGGAGCT CGATCGGCTGGAGGCAATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTG TCGAGTATGAATTCCAACAGAGCGCCTCCCTCTCCTCGCAGGGATCCGCC ACCTCGCCCTCCTTCCCGCCCTCCCTCGGCCCCTCCTTGCCCCCTTCATT CTACCAGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCATCCTCCGT ACCCTTACCACCCGCAACACCACCCACACGGGCCTCATCCACCTGCAACC GGCGTCCCTCCCTCCTCTTACCCGGATTCGTGTGGAGCCTGGCAAGGTCC TCCCTCCCTCCCTCGCGCCCCGCCCCTCCCGCCCTCCTCCCTCCCTTCGG AGCCGACCTCGTCTTCCGTCTTGTCCCTTCCTCCCGGGCTACCCTCTGGT GCCCCCGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGC CCTATGCATCATTTCTATCCCTCCCCCATTCCTCTCTCCCTCTTTGAATG TGCCGAGGAGGTGGCCCCCTCTTTCCTCCTAGTAACGTCGGGCTCGTTGT CGTACCTCCCCACGCAAAACTGACCTTTCTCTCCC back to topprotein sequence of rna1779 >rna1779-protein ID=rna1779-protein|Name=rna1779|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAA SLLSLPTHQAFPASALPPESTPKKALREEGNNNAKVRDEDAMIKREGTHS CEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVA TGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDP MRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEI RAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHH PPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSL PSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPS LNVPRRWPPLSS back to topmRNA from alignment at CM002458.1:102807..105386+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1779 ID=rna1779|Name=rna1779|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp|location=Sequence derived from alignment at CM002458.1:102807..105386+ (Nannochloropsis gaditana) cgtctttttcttccaacCTCATGAAGGCCCTGACCCTTCGACTCGCAATA
ACCGCCCTCGTCACAGGTGAAGCACGCTGCGTGCTTTATAACCCCTTCCG
CTGGCATCAGCCCGGCTTTTCGTCCGTGCAAACGGACACTACCACTCCTA
TTCAGCAGTGGTCCTGTCAGTGCAGCCTGGTGCTCTTTCTTACAGGGCAT
GGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCGTA
ATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAAAGCA
GAATGCGATCATGATGAAATaagaggaagacacggaGGCCACGCAGCTTC
CTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCCTC
CTGAATCGACACCCAAGAAGGTGCGTCGCTGGGCTGAATATATACAcaca
tacatatatatacatatatacatatatatatatagctTCAGTCGGACATG
CTAGCAATGACCTTTTGTTTTCCTTATCCTGCTGAGCGGGTAACGGGGCC
GAATCGTGGCAGATGCGATcgatgctcctccttcctctttgtccgcCCCC
GCAACAGGCACtacgagaggaaggaaataaCAACGCCAAAGtcagggacg
aggacgccatGATAAAAAGAGAGGGCACGCATTCCTGCGAAGGGAGCTCA
GGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGGAACAAGCAGCAGTGC
GGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAGCGACGTGG
AGGCGTTGAAAGCGCTGGCGGCGTCGCGCGtagcgacgggagggaaatgg
cggCGCGGAAAGTGGActccggaggaggaagtgtacGTGAACCGCGTCAC
CGAGGCCTTCCATGtgcgtgcaggagggagggcggggggggaggagggag
gggaagaatagggcggggggcgactGCCGAGTGGTAGCGTTTGGGCgtgg
gcaggggggagggagggagggaggaagggtggggagaaaggaaagaaggg
agggaaaaggaagggatggctTGGCGAAAGTCTGGGAAAGGcggaaggcg
aggggaaaaTAGTGTGAGAGGCAATACATTGAGATAAACATATGTAATAG
TGTGAGAGGCACTATATCTATGTATATCCAAATGTTTCTCCCCCTGCATT
GTAACCCTCCTTCGCACTCacgctctctttctcccaccACATTGCCCGGc
tcgtctcccccttccctttcctgccgtCATTTCCCAGCAAGGATTGCTCC
CCCTAGCGGCAGGGACCACACTGCGCTCATACTTGGCAGACAAATTGAAC
TGCGACCCCATGCGTATCACCAAGAAGTTCTCGGGCGGTGCGTGACATTT
GGTTGCATGgcgtctctcctttctcctgtcTTCTTGCGTCCTTTTCGATG
CCGCGGATGATGGTGGAGACGAGCGGCGGcactcctcttcttcccctccc
tctttccctccctctctccccgccttgcccttgtcgcctctcctccccct
tcttcacccTCCTGTGACAAACAGGTATCCACAAGGCGATAGCCAAgctc
acccccccccctccggcctctccttccctccctccatctctgtCTGCAGT
GGGCTCGATCGGCAAATGCATCTTCCATCCCTGCATGCCACCGCAACCAC
TGAAAATGGCGGAAGCGATGGTGGAGCTCGATCGGCTGGAGgtcggaagg
gagggcgggagggaggggagggcgggagagggggaagctgCGTGCTATTC
CTTTTGCTATTTGCCATTGGAGGGAGTGAAGCTGCGTGGGGTAGCACGCA
GACTCCTTCAGTCATTcacatggacgaggaggggcccTGCTGGGGTGATA
GCGAAACAACGGCGATGTAAACGGCATTTGTTCtgacttccctccctccc
tccctccctccctccctccttccgcccttccGTCCTTGTCCCTGCGATTT
CCCCTCAGGCAATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTGTCGAG
TATGAATTCCAACAgagcgcctccctctcctcgcagGGATCcgccacctc
gccctccttcccgccctccctcggcccctccttgcccccttCATTCTACC
AGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCATCCTCCGTACCCT
TACCACCCGCAACACCACCCACACGGGCCTCATCCACCTGCAACcggcgt
ccctccctcctcttaccCGGATTCGTGTGGAGCCTGGCaaggtcctccct
ccctccctcgcgccccgcccctcccgccctcctccctcccttcggaGCCG
ACCTCGTCTTCCGtcttgtcccttcctcccgggcTACCCTCTGGTGCCCC
CGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGCCCTAT
GCATCATTTCTatccctcccccattcctctctccctctttgaATgtgccg
aggaggtggccccctctttcctcctagTAACGTCGGGCTCGTTGTCGTAC
CTCCCCACGCAAAACTGACCTTTCTCTCCC back to topCoding sequence (CDS) from alignment at CM002458.1:102807..105386+ >rna1779 ID=rna1779|Name=rna1779|organism=Nannochloropsis gaditana|type=CDS|length=6195bp|location=Sequence derived from alignment at CM002458.1:102807..105386+ (Nannochloropsis gaditana) ATGGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCG TAATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAAAG CAGAATGCGATCATGATGAAATaagaggaagacacggaGGCCACGCAGCT TCCTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCC TCCTGAATCGACACCCAAGAAGGCACtacgagaggaaggaaataaCAACG CCAAAGtcagggacgaggacgccatGATAAAAAGAGAGGGCACGCATTCC TGCGAAGGGAGCTCAGGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGG AACAAGCAGCAGTGCGGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTC CTGAGAGCGACGTGGAGGCGTTGAAAGCGCTGGCGGCGTCGCGCGtagcg acgggagggaaatggcggCGCGGAAAGTGGActccggaggaggaagtgta cGTGAACCGCGTCACCGAGGCCTTCCATCAAGGATTGCTCCCCCTAGCGG CAGGGACCACACTGCGCTCATACTTGGCAGACAAATTGAACTGCGACCCC ATGCGTATCACCAAGAAGTTCTCGGGCGTGGGCTCGATCGGCAAATGCAT CTTCCATCCCTGCATGCCACCGCAACCACTGAAAATGGCGGAAGCGATGG TGGAGCTCGATCGGCTGGAGGCAATCTGGAGACGTCGCCTCGAAGAGATC CGAGCTGTCGAGTATGAATTCCAACAgagcgcctccctctcctcgcagGG ATCcgccacctcgccctccttcccgccctccctcggcccctccttgcccc cttCATTCTACCAGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCAT CCTCCGTACCCTTACCACCCGCAACACCACCCACACGGGCCTCATCCACC TGCAACcggcgtccctccctcctcttaccCGGATTCGTGTGGAGCCTGGC aaggtcctccctccctccctcgcgccccgcccctcccgccctcctccctc ccttcggaGCCGACCTCGTCTTCCGtcttgtcccttcctcccgggcTACC CTCTGGTGCCCCCGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGG TAGGTGCCCTATGCATCATTTCTatccctcccccattcctctctccctct ttgaATgtgccgaggaggtggccccctctttcctcctagATGGCTTCGCC AGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCGTAATGACGCCG TCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAAAGCAGAATGCGAT CATGATGAAATaagaggaagacacggaGGCCACGCAGCTTCCTTGCTGTC TCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCCTCCTGAATCGA CACCCAAGAAGGCACtacgagaggaaggaaataaCAACGCCAAAGtcagg gacgaggacgccatGATAAAAAGAGAGGGCACGCATTCCTGCGAAGGGAG CTCAGGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGGAACAAGCAGCA GTGCGGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAGCGAC GTGGAGGCGTTGAAAGCGCTGGCGGCGTCGCGCGtagcgacgggagggaa atggcggCGCGGAAAGTGGActccggaggaggaagtgtacGTGAACCGCG TCACCGAGGCCTTCCATCAAGGATTGCTCCCCCTAGCGGCAGGGACCACA CTGCGCTCATACTTGGCAGACAAATTGAACTGCGACCCCATGCGTATCAC CAAGAAGTTCTCGGGCGTGGGCTCGATCGGCAAATGCATCTTCCATCCCT GCATGCCACCGCAACCACTGAAAATGGCGGAAGCGATGGTGGAGCTCGAT CGGCTGGAGGCAATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTGTCGA GTATGAATTCCAACAgagcgcctccctctcctcgcagGGATCcgccacct cgccctccttcccgccctccctcggcccctccttgcccccttCATTCTAC CAGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCATCCTCCGTACCC TTACCACCCGCAACACCACCCACACGGGCCTCATCCACCTGCAACcggcg tccctccctcctcttaccCGGATTCGTGTGGAGCCTGGCaaggtcctccc tccctccctcgcgccccgcccctcccgccctcctccctcccttcggaGCC GACCTCGTCTTCCGtcttgtcccttcctcccgggcTACCCTCTGGTGCCC CCGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGCCCTA TGCATCATTTCTatccctcccccattcctctctccctctttgaATgtgcc gaggaggtggccccctctttcctcctagATGGCTTCGCCAGCCTCGTTAA TCCCGAACCAAGCAAGTGGCAGCTCGCGTAATGACGCCGTCAGAGGCGAC TGGGTGAACGCATGCAGTCATATTAAAGCAGAATGCGATCATGATGAAAT aagaggaagacacggaGGCCACGCAGCTTCCTTGCTGTCTCTCCCCACGC ACCAGGCCTTTCCAGCCTCAGCATTGCCTCCTGAATCGACACCCAAGAAG GCACtacgagaggaaggaaataaCAACGCCAAAGtcagggacgaggacgc catGATAAAAAGAGAGGGCACGCATTCCTGCGAAGGGAGCTCAGGCGCGG GTAGTGGGGGAAACGAAATTGGGGACGGAACAAGCAGCAGTGCGGTGGGT CTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAGCGACGTGGAGGCGTT GAAAGCGCTGGCGGCGTCGCGCGtagcgacgggagggaaatggcggCGCG GAAAGTGGActccggaggaggaagtgtacGTGAACCGCGTCACCGAGGCC TTCCATCAAGGATTGCTCCCCCTAGCGGCAGGGACCACACTGCGCTCATA CTTGGCAGACAAATTGAACTGCGACCCCATGCGTATCACCAAGAAGTTCT CGGGCGTGGGCTCGATCGGCAAATGCATCTTCCATCCCTGCATGCCACCG CAACCACTGAAAATGGCGGAAGCGATGGTGGAGCTCGATCGGCTGGAGGC AATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTGTCGAGTATGAATTCC AACAgagcgcctccctctcctcgcagGGATCcgccacctcgccctccttc ccgccctccctcggcccctccttgcccccttCATTCTACCAGCAGCACTA CCCTCCTCAACAGTACCCTCAGCACCATCCTCCGTACCCTTACCACCCGC AACACCACCCACACGGGCCTCATCCACCTGCAACcggcgtccctccctcc tcttaccCGGATTCGTGTGGAGCCTGGCaaggtcctccctccctccctcg cgccccgcccctcccgccctcctccctcccttcggaGCCGACCTCGTCTT CCGtcttgtcccttcctcccgggcTACCCTCTGGTGCCCCCGCTCCTGGC AGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGCCCTATGCATCATTTC TatccctcccccattcctctctccctctttgaATgtgccgaggaggtggc cccctctttcctcctagATGGCTTCGCCAGCCTCGTTAATCCCGAACCAA GCAAGTGGCAGCTCGCGTAATGACGCCGTCAGAGGCGACTGGGTGAACGC ATGCAGTCATATTAAAGCAGAATGCGATCATGATGAAATaagaggaagac acggaGGCCACGCAGCTTCCTTGCTGTCTCTCCCCACGCACCAGGCCTTT CCAGCCTCAGCATTGCCTCCTGAATCGACACCCAAGAAGGCACtacgaga ggaaggaaataaCAACGCCAAAGtcagggacgaggacgccatGATAAAAA GAGAGGGCACGCATTCCTGCGAAGGGAGCTCAGGCGCGGGTAGTGGGGGA AACGAAATTGGGGACGGAACAAGCAGCAGTGCGGTGGGTCTATCCTCGGA GGCAGAGGGTCGTGGTCCTGAGAGCGACGTGGAGGCGTTGAAAGCGCTGG CGGCGTCGCGCGtagcgacgggagggaaatggcggCGCGGAAAGTGGAct ccggaggaggaagtgtacGTGAACCGCGTCACCGAGGCCTTCCATCAAGG ATTGCTCCCCCTAGCGGCAGGGACCACACTGCGCTCATACTTGGCAGACA AATTGAACTGCGACCCCATGCGTATCACCAAGAAGTTCTCGGGCGTGGGC TCGATCGGCAAATGCATCTTCCATCCCTGCATGCCACCGCAACCACTGAA AATGGCGGAAGCGATGGTGGAGCTCGATCGGCTGGAGGCAATCTGGAGAC GTCGCCTCGAAGAGATCCGAGCTGTCGAGTATGAATTCCAACAgagcgcc tccctctcctcgcagGGATCcgccacctcgccctccttcccgccctccct cggcccctccttgcccccttCATTCTACCAGCAGCACTACCCTCCTCAAC AGTACCCTCAGCACCATCCTCCGTACCCTTACCACCCGCAACACCACCCA CACGGGCCTCATCCACCTGCAACcggcgtccctccctcctcttaccCGGA TTCGTGTGGAGCCTGGCaaggtcctccctccctccctcgcgccccgcccc tcccgccctcctccctcccttcggaGCCGACCTCGTCTTCCGtcttgtcc cttcctcccgggcTACCCTCTGGTGCCCCCGCTCCTGGCAGCAGGCCATC GCAACGTGTCGTGGCGGTAGGTGCCCTATGCATCATTTCTatccctcccc cattcctctctccctctttgaATgtgccgaggaggtggccccctctttcc tcctagATGGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAG CTCGCGTAATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATA TTAAAGCAGAATGCGATCATGATGAAATaagaggaagacacggaGGCCAC GCAGCTTCCTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGC ATTGCCTCCTGAATCGACACCCAAGAAGGCACtacgagaggaaggaaata aCAACGCCAAAGtcagggacgaggacgccatGATAAAAAGAGAGGGCACG CATTCCTGCGAAGGGAGCTCAGGCGCGGGTAGTGGGGGAAACGAAATTGG GGACGGAACAAGCAGCAGTGCGGTGGGTCTATCCTCGGAGGCAGAGGGTC GTGGTCCTGAGAGCGACGTGGAGGCGTTGAAAGCGCTGGCGGCGTCGCGC GtagcgacgggagggaaatggcggCGCGGAAAGTGGActccggaggagga agtgtacGTGAACCGCGTCACCGAGGCCTTCCATCAAGGATTGCTCCCCC TAGCGGCAGGGACCACACTGCGCTCATACTTGGCAGACAAATTGAACTGC GACCCCATGCGTATCACCAAGAAGTTCTCGGGCGTGGGCTCGATCGGCAA ATGCATCTTCCATCCCTGCATGCCACCGCAACCACTGAAAATGGCGGAAG CGATGGTGGAGCTCGATCGGCTGGAGGCAATCTGGAGACGTCGCCTCGAA GAGATCCGAGCTGTCGAGTATGAATTCCAACAgagcgcctccctctcctc gcagGGATCcgccacctcgccctccttcccgccctccctcggcccctcct tgcccccttCATTCTACCAGCAGCACTACCCTCCTCAACAGTACCCTCAG CACCATCCTCCGTACCCTTACCACCCGCAACACCACCCACACGGGCCTCA TCCACCTGCAACcggcgtccctccctcctcttaccCGGATTCGTGTGGAG CCTGGCaaggtcctccctccctccctcgcgccccgcccctcccgccctcc tccctcccttcggaGCCGACCTCGTCTTCCGtcttgtcccttcctcccgg gcTACCCTCTGGTGCCCCCGCTCCTGGCAGCAGGCCATCGCAACGTGTCG TGGCGGTAGGTGCCCTATGCATCATTTCTatccctcccccattcctctct ccctctttgaATgtgccgaggaggtggccccctctttcctcctag back to top
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