rna1745, rna1745 (mRNA) Nannochloropsis gaditana

Overview
Namerna1745
Unique Namerna1745
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2401
Alignment locationCM002458.1:15335..17160 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100142g11.2506.mrna
Orig protein idgnl|cribi|Naga_100142g11.2506
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:15335..17160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100142g11gene1678Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1745rna1745-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28925.1cds1741Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1745 ID=rna1745|Name=rna1745|organism=Nannochloropsis gaditana|type=mRNA|length=2401bp
TTTCCCCCGGCAGGAGACATCGCTTCGCTTTTTCCCTGCGGCGAGCTGCC
CTCCCTTGTGACGTTCCACTCCACGTTCAGGCCCTCTTCACATTCTGGTC
TGTTTTTTTACGTGCAAGGGGATAAAGTAAGCCGTCAAGTGATAGGACTC
AGCAGCAGGCGGTAGAGAGGACAGTATTATGCCCACAACACTCCTCAATC
CTCCCCGCCAGCAAGTGTGGAATCAGAGCGAAGGCACGACTTCCAACATC
CCACCAAAATCTCGCATTTGGCGTAAAGCCTCTAATTTATCCTCTTCTCC
TTCGAGCCTTCATCCATCCCCCTTCGCCACGAAGCACGGCATCTATTCAC
CCGCGACGCGTGTGCCTGTAAAGCCTTCCACCTCATCAAAGTCTGCTTCG
ACACCAAAAACCGGAGCTCTCCCCCTCTCCGGCGCCGACGTTTCTTCCTT
CTCCATCCCTACTCCTCCATCCCAAATGCGAATCCGTACTCTAGCATCTC
CCCCTGCCGCCTCCGCGTCTTCCTCATCTTCTGCCGTGCCAGCCCGGCCG
TCCTGGGATTCGAACGTCAAGAACCCAGCTATATATCGCCTTACCCCCCA
AGAGCAAGCCCGGCGCAACGCAGCTCTGCAGTCGTCTCAGCCCCGAGGTA
GGCGAGACAAAGAGTCAGAGCGCAGTCAGCGTCGAGAAACGTCCAAGCGA
GAGGCCCTGTCGGTGCCGACTTCTCCCTTCGCCGGGCGGGAAAAAGCCGT
GGCGGGCCCTCCTTCGGGCTCTTTGGCCGCGCGACTGGCCTTAGGACCGA
TGCAAGGTAGGAGCTTTCCCCAAGGGGGCGGAAAGGACTTCTCTCACGCG
GGAGCGTGCTGGGATCGGAAGGCATTTGTGCACGAAGGGAATGGCGGTCC
GGGGGAGAGGAGCTCACCACAACGTGCCTTCGACCCCTCCTTGACAAGAA
TTCGGTCCACTCCCGACAGACGCCGGGAAAATGCCTCTCAAAAATGTCCC
CGCAGCCTCGCTGAAGCGGCCCATCGCGCCAAAGCTGCAGAGTGCCTGGC
GTCAAACAAGTATTTGCAGGCGGAGATGTCGGCTTTCCAGGACCGTCTGT
CTCGCACGCAGGCTTCCAGGTCCTCGCTCTCTGACTTCGCGCCACGGGGG
GCCCGCTCAGCTGCCCCCACCCGTGGGCAAAGACCCCAAACCCTCGGCAG
GAAGTCTCTCTCCCTCACCCAGCCTTTATCCTCCTCCTACTCTTCCCACC
TTCCCTCTTCCATTTCCTCTTCAACTCCCAAAGTACCTCCTCGTCCTGCC
CCTCGTCCGCCTCAGCCCGCCCCTCCACACACCACTACAGCCCGGGCAAG
GCCTCTGTCTGTCGATACTCCCTCCTCCCTTACCCCTCGCGACGCAGCCG
CTTTCTTTCGCACCCTCCTGGCATGCCCGCCTCTCGGCCCCCTCATGAGC
ACAGCCGAATTGCAATTCTTGCGCTCGGTCTCGCCCTGCGACGCCTCCTC
CCTCCCGCCCTCTTTTCTCCTCTCCCTCGCTGCTCGCATGGCTGATCGTC
TCTCAGCTTTGCAAGAAGAGAACGAAGTGCTGCAAGCGCGCCTCGCACTC
TCGGAGGTCCGGAGGGAAGGACTGAGGGAGGGGCTGAGGGAGGGGATGAA
GGAGGGAGCGGGGACAAGTCAAGATCCGTTATCGACGGAGAAGATGGCCA
ACGACGTGAAGCAAGGGACCCCTCTAGCCTCCATTCCATTTCCCAAGCAA
CCATCAAGGGGGATCCACCACGACAACGAGGGAGGGACGAAAAACGGAGA
GCTCCCTACGAGCGGACAGCAAAAGCCGAGCGCGAGGGCGGCCGAGGCGA
TAAATGCCATGAAAAAGGGAGGCAGTGTCCGCGGGGGGAGGGAAGAAGGG
AACGACAAGACCGCTTCTCTGCGAGTGAGTTGGCTGGATGCAAGTGTCAC
TGCGGAGGAAAATGCGGCGCTGTTGACAGCGTTGGAGGGGATCTACCCCG
CACCGGCCATCCAGCGGGACCGTGCTTGTGCCCCGGCAGCTGTTGTTTTG
AATGGGAGGGGGTCGGGGGGCCCAGGGAGTGAAGGGGGGAAGGAAGCCTC
GCTGGCGTCCTCCCCTGCCACCTTCGGGCCCTACCTTGGCGCGCCGGCCC
CTCTTTTCGAGGAGCTGGGCAGATGGATGAGACCTGGCTCATGGCGGCGG
ACACTGAGGCCGCAAGGATGACAGGCATTGGATGGAGTGCTAGGATAGGC
TGCTCGCAGAAAAAGATATTTGAATGCGGGCCTAACGCAATATCACGGAC
ACACCGCCCCTCCCACATGCCCCGCAGAACGTGTTGTTTAGTGTCTTCAT
TCAGCTTCTGAGTTACTTTTAACATTCTTGTGCATGGAAGGGCCTGGGCC
C
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protein sequence of rna1745

>rna1745-protein ID=rna1745-protein|Name=rna1745|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MRVGSGRIKRVSSRACQGVDRVRDRVVHHAARGLASILRRVRSRLPSTDA
ECKFDVVTSVGERTTVCVPRETCAFQYRFGDVMLDRCCRLKAPGEALTDP
VP
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mRNA from alignment at CM002458.1:15335..17160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1745 ID=rna1745|Name=rna1745|organism=Nannochloropsis gaditana|type=mRNA|length=1826bp|location=Sequence derived from alignment at CM002458.1:15335..17160+ (Nannochloropsis gaditana)
TTGCCGTCGCGATGTGAGCTCGTTAGCTTTTTTGGTTTCTAGGCGGGGCT
GGGAAAATATGACAGTGTTTCTATTTCCCGCCTTTTGCGATCCTCCAAGT
CCTTTTGTTCTACACATTGTATCTCAAGGTGTAACAATTCTGTCACGTGT
TGACCACGTGATTTCCGCTGAGTCGGATCCATGACAACTCGGGCCTGGGA
TGAAACACAAAGCTTGTGTACATGTGAATGGTGCCTTCAAGTTTTCCTCG
ATTGACGGCAAAGGCACTTTTGCCGCCATATCTCCTAGACTGCCCACTTT
GAAGTAAAGCGTACCACTGCCAGAAAATCCACACGTTCTAGGAAACGGTG
AGATGCCAAGAGATGTTTATACTTCGTTCTATCAAGACGCTCCCGACCAA
CATCGATGGTAAATTCCCCCTCCACTACCTTTGAATAGCATCAGAGACAC
GGCTGTCAAATTTGTACACAGGCATTGACCTGCAGCTCCCGAGGCTATGG
CCCGCTCCAATCGTCGCAGCGGCCGAACAAGCCGCAACAGCCATAGGAAT
ATTCTGGGCAATACTAATCGTACGAAAAGCGCCCCGCGTAAGAGTACCTT
TCTGTTCGGAGCCATGGTCTTGGTTTCGATAGCAATCGTCGTCCTGGTAG
GTGCATGGACGCGATatgtttccccccccccagaaATATCATGCAGTTAC
TTTGATCGCACGCCATGAGATGTATCAGTACGTTTGGCATTGCCTGAATA
TGATTCTCTTTCGATCCTCATACCATACTATACGCCTGAACGCTCCACCT
TAGACACACGCGAGCGAGCTAAATCTCGGAGGAGAGCGTCAGACGCTGGG
CTCGCCCGCTCAGCCTCCCGACGCCACCACGGACGTGCCTGCTGAGTTTC
CCATCGTCCTCGACGAAACAAAGCTAGGCGCGGAGTTGCTTCACATACCA
GTCGACAAGACTCACGGTGGTAGCACTCCGTCAGCTGTGTTATTTCGCCT
TAAAGAGCACGTCTCTACCCTGATAAAGCGGCTGTTGCGGTCCTCTGACA
CCGCCTGTAAGTGGAGCTGGCGGTGCTTGGCATGCAAACCCAAGGAAACT
TGCAAATTGAAGCCTCAATGGGGCGATTTGCATCTGGGGCAGGCTTGTCG
GGCtcgggagagcgaggaggagtggagTGCGAGGTCAAGCAGGTTTGAAG
ATTGGATGAGGGTGGGATCAGGGAGGATCAAGCGGGTGTCGAGTAGAGCT
TGCCAAGGCGTCGATCGCGTCAGGGACAGGGTGGTGCATCACGCGGCGCG
CGGCCTGGCTTCAATTCTGCGCCGGGTGCGGTCCCGATTGCCATCGACGG
ACGCAGAATGCAAGTTTGACGTGGTGACAAGCGTAGGAGAGCGGACCACG
GTTTGTGTGCCCAGGGAGACGTGTGCATTCCAGTACCGCTTCGGGGATGT
GATGCTGGATCGATGCTGTCGCTTGAAGGCGCCTGGAGAGGCGCTGACGG
ACCCTGTGCCGTGAGAGACTTGAGGCCGACAAGGATGCGGTCTTGCCTCG
ATCGACAAGGGTTAATATATCAACGTGTACATACAAATATGGGGtcagag
ggaaaaaggaggatgtTGTGGATGTGAAGTATGCATGTATGTAAGGagac
ggggaaagagaggcatGTGAATGAGTATGATGGTGGCCTCGTTCGAGCGG
AAAGAGACAATTTAACAGGAAAGACAGAAAGCCATCTGCCTAATCATTTT
GGGTGAATACCAAGAAATGGCTGTCTTAAAACAGAGTGGCAGCCGGGCCC
AGACTCTTGAAGTaatcctttctttc
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Coding sequence (CDS) from alignment at CM002458.1:15335..17160+

>rna1745 ID=rna1745|Name=rna1745|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at CM002458.1:15335..17160+ (Nannochloropsis gaditana)
ATGAGGGTGGGATCAGGGAGGATCAAGCGGGTGTCGAGTAGAGCTTGCCA
AGGCGTCGATCGCGTCAGGGACAGGGTGGTGCATCACGCGGCGCGCGGCC
TGGCTTCAATTCTGCGCCGGGTGCGGTCCCGATTGCCATCGACGGACGCA
GAATGCAAGTTTGACGTGGTGACAAGCGTAGGAGAGCGGACCACGGTTTG
TGTGCCCAGGGAGACGTGTGCATTCCAGTACCGCTTCGGGGATGTGATGC
TGGATCGATGCTGTCGCTTGAAGGCGCCTGGAGAGGCGCTGACGGACCCT
GTGCCGTGA
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Synonyms
Publications