EWM29038.1, cds1641 (CDS) Nannochloropsis gaditana

Overview
NameEWM29038.1
Unique Namecds1641
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1151982..1152260 -
Alignment locationCM002457.1:1151238..1151680 -
Alignment locationCM002457.1:1149170..1150145 -
Alignment locationCM002457.1:1148207..1148467 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29038.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100071g14.7956.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1151982..1152260 -
CM002457.1supercontigCM002457.1:1151238..1151680 -
CM002457.1supercontigCM002457.1:1149170..1150145 -
CM002457.1supercontigCM002457.1:1148207..1148467 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|585111556|gb|EWM29038.1| (hypothetical protein Naga_100071g14 [Nannochloropsis gaditana])

HSP 1 Score: 1278.08 bits (3306), Expect = 0.000e+0
Identity = 652/652 (100.00%), Postives = 652/652 (100.00%), Query Frame = 0
Query:    1 MPPAASATFRASSSGGTTAVETSGMADEERAPLHRRLHVLQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHDLALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAAFSGEDRGGSRTTTSFPFGEEIAGASEEGAGLDDAEEEGEEEEEEEEKEDVGQGSTFLAMERRVQDQELEAVMRDSVREKDAYHEALARLEVARAELARKEEQVEQFKSLFDQLHTGRDQINVRLQQSYAEITAAEEREREAKDKAQRLDRRVAEKEEEVEKLQRLIREMEEERQALQGRLEQAEETETVWKREQAQYERTLRRMEGDLEEEGRQREAAREALAGKEKEGRVLERKMAGLEMEAGAAKKMVHSRLLEIRALRDDLMIMTREAQATQGQLQRAEREREEYRQVVEESRIRAEEAEGSLRGMEAERNDLLGSYKAAQEEVSRLTYNLNQLGRAQREQQVALGQTRAALLSMEKDLVQERREKAQTLAHAAEMSAEGERGRSGGFQQQQSQMPTLREYERQPRQDLEARQQPQQRLSELYPAEASEIMGEAEGGGGSNSENDISTSSLEEFLASRDAGEGQDRDDSSTSA 652
            MPPAASATFRASSSGGTTAVETSGMADEERAPLHRRLHVLQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHDLALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAAFSGEDRGGSRTTTSFPFGEEIAGASEEGAGLDDAEEEGEEEEEEEEKEDVGQGSTFLAMERRVQDQELEAVMRDSVREKDAYHEALARLEVARAELARKEEQVEQFKSLFDQLHTGRDQINVRLQQSYAEITAAEEREREAKDKAQRLDRRVAEKEEEVEKLQRLIREMEEERQALQGRLEQAEETETVWKREQAQYERTLRRMEGDLEEEGRQREAAREALAGKEKEGRVLERKMAGLEMEAGAAKKMVHSRLLEIRALRDDLMIMTREAQATQGQLQRAEREREEYRQVVEESRIRAEEAEGSLRGMEAERNDLLGSYKAAQEEVSRLTYNLNQLGRAQREQQVALGQTRAALLSMEKDLVQERREKAQTLAHAAEMSAEGERGRSGGFQQQQSQMPTLREYERQPRQDLEARQQPQQRLSELYPAEASEIMGEAEGGGGSNSENDISTSSLEEFLASRDAGEGQDRDDSSTSA
Sbjct:    1 MPPAASATFRASSSGGTTAVETSGMADEERAPLHRRLHVLQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHDLALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAAFSGEDRGGSRTTTSFPFGEEIAGASEEGAGLDDAEEEGEEEEEEEEKEDVGQGSTFLAMERRVQDQELEAVMRDSVREKDAYHEALARLEVARAELARKEEQVEQFKSLFDQLHTGRDQINVRLQQSYAEITAAEEREREAKDKAQRLDRRVAEKEEEVEKLQRLIREMEEERQALQGRLEQAEETETVWKREQAQYERTLRRMEGDLEEEGRQREAAREALAGKEKEGRVLERKMAGLEMEAGAAKKMVHSRLLEIRALRDDLMIMTREAQATQGQLQRAEREREEYRQVVEESRIRAEEAEGSLRGMEAERNDLLGSYKAAQEEVSRLTYNLNQLGRAQREQQVALGQTRAALLSMEKDLVQERREKAQTLAHAAEMSAEGERGRSGGFQQQQSQMPTLREYERQPRQDLEARQQPQQRLSELYPAEASEIMGEAEGGGGSNSENDISTSSLEEFLASRDAGEGQDRDDSSTSA 652          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|299117453|emb|CBN73956.1| (basal body protein [Ectocarpus siliculosus])

HSP 1 Score: 87.4261 bits (215), Expect = 3.939e-14
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   32 PLHRRLHVLQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHDLALSQDQILPLRKTIARLTRENNDLHSQVLHA 120
             + +RL   +++L  L Y D    +S+ LVE+LF+DLV T+ESYE LQ RED  + DLALS+ Q+ PL+K  ARL R+NN LH +V+ A
Sbjct:    8 SVQKRLSDQRARLLALDYHDPFTAESLALVERLFEDLVTTTESYEDLQQREDQTAADLALSRAQLFPLKKENARLLRDNNLLHLKVIKA 96          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|570942448|gb|ETP07705.1| (hypothetical protein F441_16147 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 70.0922 bits (170), Expect = 1.199e-8
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + Y +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  +Q D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSYSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLQDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|675205119|ref|XP_008911444.1| (hypothetical protein PPTG_16358 [Phytophthora parasitica INRA-310] >gi|568088468|gb|ETN03328.1| hypothetical protein PPTG_16358 [Phytophthora parasitica INRA-310])

HSP 1 Score: 68.1662 bits (165), Expect = 4.514e-8
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + Y +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  ++ D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSYSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLRDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|566014901|gb|ETI37812.1| (hypothetical protein F443_16327 [Phytophthora parasitica P1569])

HSP 1 Score: 67.781 bits (164), Expect = 4.834e-8
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + Y +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  ++ D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSYSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLRDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|568040392|gb|ETM37850.1| (hypothetical protein L914_15724 [Phytophthora parasitica])

HSP 1 Score: 67.781 bits (164), Expect = 4.876e-8
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + Y +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  ++ D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSYSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLRDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|568010519|gb|ETL84707.1| (hypothetical protein L917_15573 [Phytophthora parasitica])

HSP 1 Score: 67.781 bits (164), Expect = 4.876e-8
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + Y +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  ++ D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSYSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLRDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|567952343|gb|ETK78021.1| (hypothetical protein L915_15877 [Phytophthora parasitica] >gi|567981003|gb|ETL31451.1| hypothetical protein L916_15776 [Phytophthora parasitica] >gi|570318633|gb|ETO66581.1| hypothetical protein F444_16317 [Phytophthora parasitica P1976])

HSP 1 Score: 67.781 bits (164), Expect = 5.266e-8
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + Y +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  ++ D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSYSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLRDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
BLAST of EWM29038.1 vs. NCBI_GenBank
Match: gi|570972983|gb|ETP35738.1| (hypothetical protein F442_16177 [Phytophthora parasitica P10297])

HSP 1 Score: 66.2402 bits (160), Expect = 1.507e-7
Identity = 46/138 (33.33%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   40 LQSKLALLGYKDVVGTDSIELVEKLFDDLVATSESYERLQHREDLLSHD-LALSQDQILPLRKTIARLTRENNDLHSQVLHAVRAVDKKEVEWKREMAAVQGDLVATQDLLQEKEMACRAERRKVRQLQVQAKRLRAA 176
            LQS+L  + + +  G +S  LV +L  DL+  SE+ E  + + +    D L LSQ  +LPLRK  A+LT+ENN LH +++H   A+ ++E   + ++  ++ D+   Q L  +K   C  + ++V +LQ Q +R+ A 
Sbjct:   21 LQSQLRAMSFSEPFGVESARLVRRLLTDLLTASEARETAEKKLEKAQRDALELSQI-LLPLRKENAQLTKENNSLHLEIIHQEEAITEREKACELQLEGLRDDVKKLQFLNTQKTQQCTKKEQEVAKLQAQLERVLAT 157          
The following BLAST results are available for this feature:
BLAST of EWM29038.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585111556|gb|EWM29038.1|0.000e+0100.00hypothetical protein Naga_100071g14 [Nannochlorops... [more]
gi|299117453|emb|CBN73956.1|3.939e-1449.44basal body protein [Ectocarpus siliculosus][more]
gi|570942448|gb|ETP07705.1|1.199e-834.78hypothetical protein F441_16147 [Phytophthora para... [more]
gi|675205119|ref|XP_008911444.1|4.514e-834.06hypothetical protein PPTG_16358 [Phytophthora para... [more]
gi|566014901|gb|ETI37812.1|4.834e-834.06hypothetical protein F443_16327 [Phytophthora para... [more]
gi|568040392|gb|ETM37850.1|4.876e-834.06hypothetical protein L914_15724 [Phytophthora para... [more]
gi|568010519|gb|ETL84707.1|4.876e-834.06hypothetical protein L917_15573 [Phytophthora para... [more]
gi|567952343|gb|ETK78021.1|5.266e-834.06hypothetical protein L915_15877 [Phytophthora para... [more]
gi|570972983|gb|ETP35738.1|1.507e-733.33hypothetical protein F442_16177 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1645rna1645Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications