rna1641, rna1641 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1641
Unique Name	rna1641
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2277
Alignment location	CM002457.1:1138535..1140678 +

Link to JBrowse

Properties


Property Name	Value
Product	beta-lactamase
Orig transcript id	gnl\|cribi\|Naga_100071g10.7950.mrna
Orig protein id	gnl\|cribi\|Naga_100071g10.7950
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1138535..1140678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100071g10	gene1578	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1641	rna1641-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29032.1	cds1637	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1138535..1140678+
coding sequence from alignment at CM002457.1:1138535..1140678+

mRNA sequence

>rna1641 ID=rna1641|Name=rna1641|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp
ATGGCTAAGAAAAAAAACACGCGCAAGCGCAACAAAGCAGCCGGGAATGC
CTCGACAAAAGATGCAACTCCGACAAGTGCAGCAACAAAAGCAGGACCTA
AAGAGATCAGTCTAGACTCTACCAAGGACACCGCATCCCAAACCAGCGTC
TCAAAGACCGGCTCGAACGATCGTACCAAACCTACCGGCTTGGACGTGAA
CTGGTCTATCCTCTCCCAAGACGAGCAAGCTTTAGCGGAAATCTTGTTGA
AGGCCGGGCAAGCCCACCTCTTCGATGAATGGGACGCCCCAGGGACAAAT
GATGAGCTTAAGCACGCTTTTTTCGCGCATGTAGAACGATTGCATCGGAC
ATACCCTTTTCCTGGTGGCCTGCTCGCTTACATCGAACGTGCCCGGCGCC
TGTTGGCAGGTTCAGCTGCGGGAGCGAACTCTTTGGATGACTGGGTGCCG
ACAGTCCCAGAAGGAGAAGTTTTGAAGCCTGGGTCGGAGGAGTTCTCGAA
TTGGGAGGCCGTGGGCGAGGCGGAATTGAGCGCGACGGCCTTTGTCCTCG
TCGCGGGAGGGTTGGGCGAGCGCCTGGGCTACAGCGGTATCAAGGTGGCC
TTGCCGACGGAGATGACGACCGAGACATCGTATTTAGAATTTTATTGCAA
TTATCTTGTTGCCCTCGGCATGATGAAGGGCAAGGGAAAGGTACCGCCGT
TGGCGATCATGGTTTCGGACGACACTCATGACCGTACCCTTGCTGTGCTC
CAAGCAAACGATTTCTTTGGCTTTCCGCGGGACCAACTGACACTTATGAA
ACAGGAGAAGGTTCCTGCGCTTATGGACAATAACGCGCGCATCGCGCGAC
CGTCCAGAGGGACCAAGGGCGTGGACGATGTCCGGTACGCAATAGATTGC
AAGCCTCACGGACATGGAGACGTCCACTCCCTTCTCCACAGCACGGGCTT
GGCCCGACGATGGGAAGAGGACGGGTTGAAATGGGTGGTTTTTTTCCAGG
ATACGAACGCGTTGGCCTTTTTTCCCCTGGCAGCTGCGTTGGCTGTGAGC
GCACGTCGGGACTTGGCTGTCAACTCTCTAGCCATCCCACGCGTCCCCAA
ACAAGCCATCGGCGCCATCACCCGTCTGACCCGTACATCGGGCACAGAGA
CGCAGGTGATGATCGTCAACGTCGAATATAATCAGCTCGATCCTCTGCTG
CGAGCTGCCGGGAGTGGAGAAGGGGACACGGCGGACCCTGCGACAGGCCA
TAGCCCCTACCCGGGCAACATCAACCAGCTCATCTTTGCCCTCACTCCCT
ATGTGGCGACCTTGGAGAAGACACACGGCGTCATGGCCGAGTTTGTCAAC
CCCAAGTACGCGGACGGGGCTCGCACCGTTTTCAAAAAACCGACCCGCTT
GGAGTGCATGATGCAAGATTTCCCAAAGGTCCTGGGGCCGGAGGCTAAGG
TCGGGTTTACCTCCCTGCCCGCCTGGTTCTCTTTTTCACCCGTCAAGAAC
AACATAGCCGACGCGGCCAAGGCATTGGAAAGCGGAACTCCTCCCGGAGG
TGCAGCCACGGGTGAAGCGGATCAGTACTTTGCTTATGCAGAGCAGCTGC
GACTCCTGGGGTGTCGCGTCATGCAGGCTCCTACAGAGGGCTACGCGGGT
GTATCTGTGAGCCTAGGTCCGCGGGTAGTGATTGCTCCCTCAATTGCCCT
TACCTACCATGACCTTCGCGCCATTTTCGTCCATCCTGAAAAAGTGAGCA
TCGACGCAGCGGCCACATTGGTCATCCGTGGTACGGGGAAGGTGGAGGTG
GACTCAATCACGTTGGAGGGAGCATTGATTCTTTCGGTTGGCCAAGGAAC
CACGGTCGTGCTGAAGGATTTGACACTGAAAAACAAAGGCCATATTGTCA
GGCCTCTGAGTGGGAAGGAGGAGTCGGACGAGGTCTCCCGCATGCGGGGG
TATCGGCTGGTAAAGATGGAGGAGCTTCGCATCCAAGCTCCCCCCAACGC
TGGTCGCTTGTTTCTGACAGCACAGGGAACGCTGACGCATGAAAAAGATC
TGTCAGCTAAAGGCTCCGCAGCCACACAATCCTACGCAGCAACAACGGCG
GCGACTCCGGCGGCCGCCGTGACCGAGGCACGTGACGGCCAAAAGCATCC
GGCCTCTCAGGACCCTTCCCACGCGGCGGACGCAACGCAAGGAAGCGGCG
AAGGCAATGAAGCTAAAGAGGCGCCATCAGGCAGCCAGACTTTCTTCTCG
CGAATATTTAGCTGTTTTCGAAAATAA

protein sequence of rna1641

>rna1641-protein ID=rna1641-protein|Name=rna1641|organism=Nannochloropsis gaditana|type=polypeptide|length=634bp
MVCTAAVKRLDTGLVKALKGSPLPGLTIILVDKEQPSPFFRHYGVAHLDQ
TQLARTRPVNDETIFPIGASLTKNFVALLVVQLHVKGKLSLDDPITTYLP
NLRINQLEKGAPPITLRHLLSHTSGIREYRNRHDILRMMKEFAPWPKIGV
KRPRSEAAALRDYYCGPAALPVQAVGIPGRQHIKSHHNYGLLALACEEVA
AACDANSSRRSSRTGIRSLLRANVFQPLRMTSTDLQVPEGHSRDLTTSFR
WAKKEGFLPIPAHGVFDPGQGRPSGVGGLSYSSAQDMGRYLQALVDPAQS
ANGALSETMLDELLRPSYQKDAFLPAQALSFAVEESFDPVDREVAYVTCG
QGMSFAGYQTALIFSRHRGVGAGVLCNAGSDSYELSRVAAMAFQEVSRQA
SDARAGSVWCETRGDGAGKELPQEGSSRTEQRKREFGVTDQQEDVPVVAQ
PISTREEPAPCQLRSSSHARPWRQAFGMRAPGFEAAVLWPQVVGVYQLPW
KEFSARVMWTLGGEVQVYVEDSRLRMRALWGPLRTRLFNKEKGLVLLPAQ
DGHPLHFSVEGAGRQVLSTPVRGGTDIAFDVTTGGMTLGMVTLQRTRWYF
SLRVWAMGFLAMESLRLIGRGKFVEIMTSLLLWG

mRNA from alignment at CM002457.1:1138535..1140678+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1641 ID=rna1641|Name=rna1641|organism=Nannochloropsis gaditana|type=mRNA|length=2144bp|location=Sequence derived from alignment at CM002457.1:1138535..1140678+ (Nannochloropsis gaditana)
TGCAGTTGCTCGCTGCATTTTTCTGGGCTGAATCCAAGCAAGGATCTGCT
CATTGTAATGTCTGTCGGTGTTCCAGCCAAGGGCCAACGTGGGGTCGATT
TGTTGCTTTGTCAACTCCTTTGTTACAATGGGCGTTTCTGACAATCACAG
ATGGTATGTACCGCCGCGGTAAAGCGTCTGGATACTGGTCTCGTCAAGGC
CCTCAAGGTAATGTCTTGCAATAATTATCGTTCTCAAGTCGCGCCTAAAT
ATATTAATTATAGTGTTTTATCATTCAAACTACTAGGGTTCCCCGCTTCC
AGGTCTGACTATCATTTTGGTTGACAAAGAACAGCCTTCACCATTTTTTC
GACATTACGGTGTAGCACATCTGGACCAGACACAGCTCGCACGCACGCGT
CCTGTGAATGATGAGACAATTTTCCCAATCGGAGCAAGCTTGACGAAGAA
TTTCGTCGCGCTGCTTGTCGTCCAGCTTCATGTGAAAGGAAAATTGAGTC
TTGATGATCCGATCACAACATATTTGCCCAATTTGCGAATAAATCAACTG
GAAAAGGGTGCGCCTCCAATTACTTTGCGAcatctcctctcccacaccAG
TGGAATCCGGGAGTACCGCAACCGCCATGACATATTGCGCATGATGAAGG
AATTCGCACCGTGGCCCAAAATTGGAGTAAAACGTCCCAGAAGCGAAGCA
GCGGCGCTTCGGGACTACTACTGTGGACCCGCAGCTCTGCCTGTCCAGGC
GGTGGGAATTCCGGGAAGGCAACACATCAAGAGCCACCACAACTACGGGC
TCCTGGCCCTTGCTTgcgaggaagtggcggcTGCCTGCGATGCGAATAGC
TCCCGCCGATCGTCGAGGACGGGAATTCGGTCGCTCCTCAGAGCGAACGT
CTTCCAGCCCCTCCGCATGACGAGCACGGATCTCCAGGTGCCGGAGGGAC
ACAGCAGGGACCTGACCACGTCTTTTCGATGGGCCAAGAAGGAAGGATTC
TTGCCCATACCGGCGCATGGTGTCTTTGACCCGGGCCAAGGGCGTCCTTC
CGGCGTGGGGGGGCTGTCCTATTCCAGCGCCCAGGACATGGGCCGATATC
TGCAGGCCTTGGTGGACCCCGCCCAATCCGCGAACGGCGCGCTTTCCGAG
ACTATGCTGGACGagctccttcgtccttcgtACCAAAAGGATGCATTTTT
GCCCGCACAAGCCCTGAGTTTTGCAGTGGAGGAGTCGTTCGATcctgtgg
accgggaggtgGCCTACGTCACGTGCGGTCAGGGAATGTCGTTCGCAGGA
TACCAGACCGCGTTAATCTTCTCTCGACACCGTGGGGTAGGGGCAGGGGT
CTTGTGCAATGCTGGAAGCGATTCCTACGAGCTCTCCCGGGTGGCAGCCA
TGGCGTTCCAGGAGGTTTCGCGGCAGGCCTCGGACGCCAGGGCGGGTTCT
GTATGGTGCGAGACGCGAGGGGATGGAGCTGGGAAGGAACTTCCACAAGA
GGGCTCGAGTCGTACGGAGCAGCGTAAGAGAGAATTTGGCGTGACTGATC
AGCAGGAGGACGTGCCTGTCGTGGCGCAACCTATATCGACCCGAGAGGAA
CCTGCACCGTGCCAGCTTCGCTCGAGCTCGCACGCCCGGCCCTGGAGACA
GGCATTTGGAATGCGGGCTCCGGGCTTCGAGGCGGCGGTCCTGTGGCCGC
AGGTGGTCGGGGTCTACCAACTCCCCTGGAAAGAATTCTCAGCCCGGGTT
ATGTGGACCTTGGGCGGCGAAGTTCAAGTGTACGTGGAAGACTCCCGGCT
GCGGATGCGCGCCCTCTGGGGCCCTCTCCGTACCCGTCTATTCAACAAGG
AGAAAGGCTTGGTCCTGTTGCCCGCGCAAGACGGACACCCTTTGCATTTC
TcggtggagggagccggGCGGCAGGTCTTGAGCACACCTgtgcggggagg
gacggacatTGCTTTCGACGTGACGACCGGGGGGATGACGTTGGGGATGG
TGACGTTGCAGAGAACGCGCTGGTATTTCAGCCTGCGAGTGTGGGCTATG
GGCTTTTTGGCCATGGAAAGCTTGCGATTGATAGGACGTGGGAAATTTGT
CGAGATCATGACGTCGCTCTTGTTATGGGGATGagcaaaagaag

Coding sequence (CDS) from alignment at CM002457.1:1138535..1140678+

>rna1641 ID=rna1641|Name=rna1641|organism=Nannochloropsis gaditana|type=CDS|length=3810bp|location=Sequence derived from alignment at CM002457.1:1138535..1140678+ (Nannochloropsis gaditana)
ATGGTATGTACCGCCGCGGTAAAGCGTCTGGATACTGGTCTCGTCAAGGC
CCTCAAGGGTTCCCCGCTTCCAGGTCTGACTATCATTTTGGTTGACAAAG
AACAGCCTTCACCATTTTTTCGACATTACGGTGTAGCACATCTGGACCAG
ACACAGCTCGCACGCACGCGTCCTGTGAATGATGAGACAATTTTCCCAAT
CGGAGCAAGCTTGACGAAGAATTTCGTCGCGCTGCTTGTCGTCCAGCTTC
ATGTGAAAGGAAAATTGAGTCTTGATGATCCGATCACAACATATTTGCCC
AATTTGCGAATAAATCAACTGGAAAAGGGTGCGCCTCCAATTACTTTGCG
AcatctcctctcccacaccAGTGGAATCCGGGAGTACCGCAACCGCCATG
ACATATTGCGCATGATGAAGGAATTCGCACCGTGGCCCAAAATTGGAGTA
AAACGTCCCAGAAGCGAAGCAGCGGCGCTTCGGGACTACTACTGTGGACC
CGCAGCTCTGCCTGTCCAGGCGGTGGGAATTCCGGGAAGGCAACACATCA
AGAGCCACCACAACTACGGGCTCCTGGCCCTTGCTTgcgaggaagtggcg
gcTGCCTGCGATGCGAATAGCTCCCGCCGATCGTCGAGGACGGGAATTCG
GTCGCTCCTCAGAGCGAACGTCTTCCAGCCCCTCCGCATGACGAGCACGG
ATCTCCAGGTGCCGGAGGGACACAGCAGGGACCTGACCACGTCTTTTCGA
TGGGCCAAGAAGGAAGGATTCTTGCCCATACCGGCGCATGGTGTCTTTGA
CCCGGGCCAAGGGCGTCCTTCCGGCGTGGGGGGGCTGTCCTATTCCAGCG
CCCAGGACATGGGCCGATATCTGCAGGCCTTGGTGGACCCCGCCCAATCC
GCGAACGGCGCGCTTTCCGAGACTATGCTGGACGagctccttcgtccttc
gtACCAAAAGGATGCATTTTTGCCCGCACAAGCCCTGAGTTTTGCAGTGG
AGGAGTCGTTCGATcctgtggaccgggaggtgGCCTACGTCACGTGCGGT
CAGGGAATGTCGTTCGCAGGATACCAGACCGCGTTAATCTTCTCTCGACA
CCGTGGGGTAGGGGCAGGGGTCTTGTGCAATGCTGGAAGCGATTCCTACG
AGCTCTCCCGGGTGGCAGCCATGGCGTTCCAGGAGGTTTCGCGGCAGGCC
TCGGACGCCAGGGCGGGTTCTGTATGGTGCGAGACGCGAGGGGATGGAGC
TGGGAAGGAACTTCCACAAGAGGGCTCGAGTCGTACGGAGCAGCGTAAGA
GAGAATTTGGCGTGACTGATCAGCAGGAGGACGTGCCTGTCGTGGCGCAA
CCTATATCGACCCGAGAGGAACCTGCACCGTGCCAGCTTCGCTCGAGCTC
GCACGCCCGGCCCTGGAGACAGGCATTTGGAATGCGGGCTCCGGGCTTCG
AGGCGGCGGTCCTGTGGCCGCAGGTGGTCGGGGTCTACCAACTCCCCTGG
AAAGAATTCTCAGCCCGGGTTATGTGGACCTTGGGCGGCGAAGTTCAAGT
GTACGTGGAAGACTCCCGGCTGCGGATGCGCGCCCTCTGGGGCCCTCTCC
GTACCCGTCTATTCAACAAGGAGAAAGGCTTGGTCCTGTTGCCCGCGCAA
GACGGACACCCTTTGCATTTCTcggtggagggagccggGCGGCAGGTCTT
GAGCACACCTgtgcggggagggacggacatTGCTTTCGACGTGACGACCG
GGGGGATGACGTTGGGGATGGTGACGTTGCAGAGAACGCGCTGGTATTTC
AGCCTGCGAGTGTGGGCTATGGGCTTTTTGGCCATGGAAAGCTTGCGATT
GATAGGACGTGGGAAATTTGTCGAGATCATGACGTCGCTCTTGTTATGGG
GATGaATGGTATGTACCGCCGCGGTAAAGCGTCTGGATACTGGTCTCGTC
AAGGCCCTCAAGGGTTCCCCGCTTCCAGGTCTGACTATCATTTTGGTTGA
CAAAGAACAGCCTTCACCATTTTTTCGACATTACGGTGTAGCACATCTGG
ACCAGACACAGCTCGCACGCACGCGTCCTGTGAATGATGAGACAATTTTC
CCAATCGGAGCAAGCTTGACGAAGAATTTCGTCGCGCTGCTTGTCGTCCA
GCTTCATGTGAAAGGAAAATTGAGTCTTGATGATCCGATCACAACATATT
TGCCCAATTTGCGAATAAATCAACTGGAAAAGGGTGCGCCTCCAATTACT
TTGCGAcatctcctctcccacaccAGTGGAATCCGGGAGTACCGCAACCG
CCATGACATATTGCGCATGATGAAGGAATTCGCACCGTGGCCCAAAATTG
GAGTAAAACGTCCCAGAAGCGAAGCAGCGGCGCTTCGGGACTACTACTGT
GGACCCGCAGCTCTGCCTGTCCAGGCGGTGGGAATTCCGGGAAGGCAACA
CATCAAGAGCCACCACAACTACGGGCTCCTGGCCCTTGCTTgcgaggaag
tggcggcTGCCTGCGATGCGAATAGCTCCCGCCGATCGTCGAGGACGGGA
ATTCGGTCGCTCCTCAGAGCGAACGTCTTCCAGCCCCTCCGCATGACGAG
CACGGATCTCCAGGTGCCGGAGGGACACAGCAGGGACCTGACCACGTCTT
TTCGATGGGCCAAGAAGGAAGGATTCTTGCCCATACCGGCGCATGGTGTC
TTTGACCCGGGCCAAGGGCGTCCTTCCGGCGTGGGGGGGCTGTCCTATTC
CAGCGCCCAGGACATGGGCCGATATCTGCAGGCCTTGGTGGACCCCGCCC
AATCCGCGAACGGCGCGCTTTCCGAGACTATGCTGGACGagctccttcgt
ccttcgtACCAAAAGGATGCATTTTTGCCCGCACAAGCCCTGAGTTTTGC
AGTGGAGGAGTCGTTCGATcctgtggaccgggaggtgGCCTACGTCACGT
GCGGTCAGGGAATGTCGTTCGCAGGATACCAGACCGCGTTAATCTTCTCT
CGACACCGTGGGGTAGGGGCAGGGGTCTTGTGCAATGCTGGAAGCGATTC
CTACGAGCTCTCCCGGGTGGCAGCCATGGCGTTCCAGGAGGTTTCGCGGC
AGGCCTCGGACGCCAGGGCGGGTTCTGTATGGTGCGAGACGCGAGGGGAT
GGAGCTGGGAAGGAACTTCCACAAGAGGGCTCGAGTCGTACGGAGCAGCG
TAAGAGAGAATTTGGCGTGACTGATCAGCAGGAGGACGTGCCTGTCGTGG
CGCAACCTATATCGACCCGAGAGGAACCTGCACCGTGCCAGCTTCGCTCG
AGCTCGCACGCCCGGCCCTGGAGACAGGCATTTGGAATGCGGGCTCCGGG
CTTCGAGGCGGCGGTCCTGTGGCCGCAGGTGGTCGGGGTCTACCAACTCC
CCTGGAAAGAATTCTCAGCCCGGGTTATGTGGACCTTGGGCGGCGAAGTT
CAAGTGTACGTGGAAGACTCCCGGCTGCGGATGCGCGCCCTCTGGGGCCC
TCTCCGTACCCGTCTATTCAACAAGGAGAAAGGCTTGGTCCTGTTGCCCG
CGCAAGACGGACACCCTTTGCATTTCTcggtggagggagccggGCGGCAG
GTCTTGAGCACACCTgtgcggggagggacggacatTGCTTTCGACGTGAC
GACCGGGGGGATGACGTTGGGGATGGTGACGTTGCAGAGAACGCGCTGGT
ATTTCAGCCTGCGAGTGTGGGCTATGGGCTTTTTGGCCATGGAAAGCTTG
CGATTGATAGGACGTGGGAAATTTGTCGAGATCATGACGTCGCTCTTGTT
ATGGGGATGa

Synonyms

Publications