rna1634, rna1634 (mRNA) Nannochloropsis gaditana

Overview
Namerna1634
Unique Namerna1634
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationCM002457.1:1110349..1111327 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100071g3.7944.mrna
Orig protein idgnl|cribi|Naga_100071g3.7944
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1110349..1111327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100071g3gene1571Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29026.1cds1630Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1634rna1634-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1634 ID=rna1634|Name=rna1634|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGAAAGCGGGGTTACCAGTGCCGGGAGCAGCTCCTTCAGGTTTACTGCT
TTGTAGTGCATTGGAGGAAGCAATGACTTCGCAAGAATGTTGTGGCGGCA
GCAGCAACACGCAACACGTACAGCTGCATTCAGCAGCCATAGTGAACATT
GAAAATGAAGGCTTTGGGGACAGGCACAGGATACGCGGAACGAAAAGAAT
ATAG
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protein sequence of rna1634

>rna1634-protein ID=rna1634-protein|Name=rna1634|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MSDQDVKEAAAAGGNASPGAAVNESGTTTKETRKDLQATMKDLRPGEKAK
EALRWYVHLEEKGTPLRPIFKSARESLNDAVARVDQFLETGKAHASAAIH
NLEPDISWMGKEVGTVDDFARTHRELTVGAIGLAVALPSALGGARRAVIN
GVVAATGAAAMFAMSDFFERQEKKKEGVRKAGEGSKG
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mRNA from alignment at CM002457.1:1110349..1111327-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1634 ID=rna1634|Name=rna1634|organism=Nannochloropsis gaditana|type=mRNA|length=979bp|location=Sequence derived from alignment at CM002457.1:1110349..1111327- (Nannochloropsis gaditana)
TTCGAAGATAAATGCTGGAGACTGACGTTAAATCCTCTTTTTCCGCCTCA
ATCACAATCTTCATTCGAAACTATCGCTATTGAAACCGAACTAGCCGGCC
AATCACATTCATGTCGGATCAGGATGTCAAAGAGGCGGCCGCCGCCGGAG
GGAACGCCTCACCAGGAGCAGCAGTCAATGAATCAGGCACGACAACGAAA
GAGACAAGGAAAGACCTTCAAGCGACTATGAAAGATCTACGTCCGGGAGA
AAAGGCCAAAGAAGCTTTACGGTGGTATGTGCATCTGGAAGAGAAAGGAA
CGCCTCTGCGCCCCATTTTTAAGTCGGCCCGTGAATCCCTTAACGACGCG
GTAGCACGCGTAGATCAGTTTCTTGAAACTGGTAAAGCACACGCTTCTGC
CGCAATTCACAATCTAGAGCCAGATATATCATGGATGGGAAAAGAGGTAG
GCACGGTAGATGATTTTGCCAGGACACATCGGGAACTCACCGTCGGGGCG
ATCGGCTTGGCGGTTGCGCTACCGTCTGCGTTAGGAGGAGCACGCAGGGC
AGTGATTAATGGAGTGGTCGCCGCGACGGGCGCTGCGGCAATGTTTGCGA
TGAGTGATTTTTTCGAACGACAAGAGAAAAAGAAGGAGGGTGTACGAAAA
GCGGGCGAGGGAAGCAAAGGATAATGGTCATATCGGTGGATGCCCGCGGC
AGATAAAGTGTGGTTGAAAGCAAGGAGCCGCACGGAGGAAATGTGACAGG
CGTACAGCCTATGCAGATGACGTTGACCGATTTTGTCTGGTCTTTACTAC
GGCTATATTCTTTTCGTTCCGCGTATCCTGTGCCTGTCCCCAAAGCCTTC
ATTTTCAATGTTCACTATGGCTGCTGAATGCAGCTGTACGTGTTGCGTGT
TGCTGCTGCCGCCACAACATTCTTGCGAAGTCATTGCTTCCTCCAATGCA
CTACAAAGCAGTAAACCTGAAGGAGCTGC
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Coding sequence (CDS) from alignment at CM002457.1:1110349..1111327-

>rna1634 ID=rna1634|Name=rna1634|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002457.1:1110349..1111327- (Nannochloropsis gaditana)
ATGTCGGATCAGGATGTCAAAGAGGCGGCCGCCGCCGGAGGGAACGCCTC
ACCAGGAGCAGCAGTCAATGAATCAGGCACGACAACGAAAGAGACAAGGA
AAGACCTTCAAGCGACTATGAAAGATCTACGTCCGGGAGAAAAGGCCAAA
GAAGCTTTACGGTGGTATGTGCATCTGGAAGAGAAAGGAACGCCTCTGCG
CCCCATTTTTAAGTCGGCCCGTGAATCCCTTAACGACGCGGTAGCACGCG
TAGATCAGTTTCTTGAAACTGGTAAAGCACACGCTTCTGCCGCAATTCAC
AATCTAGAGCCAGATATATCATGGATGGGAAAAGAGGTAGGCACGGTAGA
TGATTTTGCCAGGACACATCGGGAACTCACCGTCGGGGCGATCGGCTTGG
CGGTTGCGCTACCGTCTGCGTTAGGAGGAGCACGCAGGGCAGTGATTAAT
GGAGTGGTCGCCGCGACGGGCGCTGCGGCAATGTTTGCGATGAGTGATTT
TTTCGAACGACAAGAGAAAAAGAAGGAGGGTGTACGAAAAGCGGGCGAGG
GAAGCAAAGGATAA
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Synonyms
Publications