rna1468, rna1468 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1468
Unique Name	rna1468
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	570
Alignment location	CM002457.1:712436..715365 +

Link to JBrowse

Properties


Property Name	Value
Product	methylmalonic aciduria type a mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100007g113.6462.mrna
Orig protein id	gnl\|cribi\|Naga_100007g113.6462
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:712436..715365 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g113	gene1418	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1468	rna1468-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29135.1	cds1465	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:712436..715365+
coding sequence from alignment at CM002457.1:712436..715365+

mRNA sequence

>rna1468 ID=rna1468|Name=rna1468|organism=Nannochloropsis gaditana|type=mRNA|length=570bp
ATGTGCTATCGCTTCGATTTCATGTCAATTTCTCACCTTCATACTCTTTC
ATTCCCCCCCCATCACTTCGCTCTTGATTCACAGCGTATGCCCTTGCACT
CGGTCTACATTGTAAATGCAGAGTTCATTGTTCTATATGGCAAAGTGTTT
CCATCTCAGGCCATGGGGCACAACAGTGGTCGACTTCAATGGGAACGAGC
TCTGTACCGAAGAACAGGGCAAAATTGGCAAGTGGCCTCTTTGCCACAAT
TTTTCCGTGACGGTGAAGTCACTGTCGTATACCTGCGGTTTCACGACGTT
GTGATGATCGTTGCTGGCACGGACGAGTGCAACGAGACGATCCTCACAGG
ACTAATTGAAACAATTTCTGATCTCTTCTCCTTCGCTTGCTGGGGGAAAA
AGAAAAAGAAAGCCACCAGAGGTAGTGCCGAAATGGACTTTGTTCACAAG
GAAGGGGGGGCTTATGTAAGGTTCTCCATTTATTTGGATCAACTTATCTC
ACACGGCATTGTAGCGACGATGAACGTCGACGTAATTGACAGATTGGCAA
AGGGAAGGTCAATCCTGTAA

protein sequence of rna1468

>rna1468-protein ID=rna1468-protein|Name=rna1468|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp
MHYSTMRPIFLWMKKIYARPLTKPLTPIRSATVECSVGFSTCSMTPETRQ
LAEGVLRGNRLALSRAITLIESTKESHRLDAEALLDHVVYERSRRVREKG
RLKPGNSTSNAACVADEGRIGTSENVRPLRVGIAGPPGAGKSTFIEALGK
YLTDSKKLRVAVIAVDPSSSRSGGSILGDKTRMYELAKDPKAFVRACPTS
GVLGGVARYTNDVVLLCQAASFDIVFIESVGLGQSETIIDQASDMLLLLV
PPAGGDELQGVKKGIMEVADVIVVNKADGHLLTAAQHTAAAYQHALCFQR
RKWDAWMPSVTLCSALERHRIADVWEQVCSCSDVFRRSGYLRLKRQNQDK
YWVWNSLEDILVRRARTSSKIKAGVERMEKELGKGTLTPRSAAEILLADF
FEEQKSPTKSMAPFQQSTSCFRPSSSD

mRNA from alignment at CM002457.1:712436..715365+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1468 ID=rna1468|Name=rna1468|organism=Nannochloropsis gaditana|type=mRNA|length=2930bp|location=Sequence derived from alignment at CM002457.1:712436..715365+ (Nannochloropsis gaditana)
ATTGCACAACAAAAGCTTGTGGGGGAATTCGGGGCTTTCCTGTGTTCTTC
CCTACTAGTAATATTCTCGTTGGCTCATGCACCGGGAGGGCCCGACAGAG
CGGCCCCTCGCACACGCGACATTAAAtaatcctctccctctttcatcgCA
AATTCGACAGGATATGATCGCTTGACAGTATTCAGTAAAAAAGAAGTTAA
GCATGcgaacctcccgccccagAGAGTGCGATAACTACTGAGTAACGAGA
CATAGCACCTTCCCGCGAATGCATTATTCGACTATGCGGCCGATCTTCTT
GTGGATGAAAAAAATATACGCTAGGCCTTTGACTAAGCCATTGACACCAA
TCAGAAGCGCTACTGTTGAGTGTTCTGTCGGCTTTTCTACCTGCTCCATG
ACCCCCGAAACTCGTCAACTCGCCGAGGGTGTCCTTCGAGGAAATCGGTT
AGCTTTAAGTAGAGCGATTACTTTGATAGAGTCCACGAAGGAGAGTCATC
GACTCGATGCTGAGGCATTGTTGGACCACGTTGTTTACGAGCGGAGCCGT
CGAGTCCGAGAAAAGGGACGACTCAAACCGGGGAATTCCACGAGCAACGC
AGCCTGTGTCGCTGATGAGGGTAGAATCGGCACGTCTGAAAATGTTCGAC
CCTTGCGAGTCGGAATTGCTGGGCCGCCAGGTGCTGGGAAATCGACTTTT
ATAGAGGCCCTAGGCAAATACCTGACGGATAGTAAGAAATTGGTACGTGC
TGGTTACAGCGAACTAGAAGAGACCACGCGTCTGCTGTCCTACCACTTAG
TGGTTGTGAGTTTGTGACCTGACGGCTCTTTGTCTGATGCTCTCGCAACC
ATTTACAGCGTGTCGCTGTCATCGCAGTGGATCCGTCATCAAGCCGCAGC
GGGGGTTCCATTCTGGGAGATAAAACTCGTATGTACGAGTTGGCGAAAGA
CCCGAAGGCATTTGTGCGTGCTTGCCCAACCAGTGGGGTTCTGGGTGGCG
TGGCGCGCTACACGAATGATGTAGTCCTGCTTTGTCAAGCCGCATCTTTT
GACATAGTTTTCATTGAGAGCGTGGGGCTCGGCCAATCCGAAACTATAAT
CGACCAGGCATCGGAcatgcttcttctccttgttcctcctgcgggcgggg
acgaatTGCAGGGCGTGAAGAAGGGAATCATGGAGGTTGCGGACGTCATA
GTCGTTAACAAAGCGGACGGCCATCTTCTCACGGCTGCTCAGCACACAGC
TGCAGCGTATCAGCACGCCCTTTGCTTTCAACGGCGCAAATGGGACGCTT
GGATGCCGAGTGTGACCCTCTGCTCGGCTTTGGAGCGTCATCGCATCGCA
GACGTATGGGAGCAGGTGTGTTCATGTAGTGACGTTTTCAGGCGGTCCGG
ATATCTCCGCTTAAAGCGACAGAATCAGGATAAATATTGGGTCTGGAATA
GTTTAGAGGACATTCTCGTGCGACGAGCGAGAACATCCTCGAAAATAAAA
GCCGGTGTGGAgcggatggaaaaagaatTGGGGAAAGGGACCCTGACCCC
CCGATCCGCAGCCGAGATCCTTCTCGCGGATTTCTTCGAAGAGCAGAAGT
CTCCGACGAAAAGTATGGCGCCGTTCCAACAGTCAACATCATGCTTTCGT
CCATCTTCTTCTGATTAATATCTTACGTCCCATATTCAAGTACGATTTGC
GCCGCTAAACTCACGCAAAAAATTCAAGTAATGATTGTCATCTATTTTGC
GGCCGTGACTAACTTCAGCTCTTGTCGCCCCAGATCTGGTGTTTCTAGAA
CACCGAGAAAACTGGATTTACTCATCAAACTCTCTGAGCTCCTTCGATCC
GATCCACTGAAAAACACCACTCTTCTTTgctccacttcttccttaCAGAA
GATCATCATCGCTGTAGCAGGCGAAGGGCGGGTCACCTGGCAGCATGCCC
GTGTCTCGGTATGTGCCGGCGTAGCGCTCATTTGCGCCCCTTTCGTCATG
AAACCAATTCGTTTCTTCAATGCTCTGCAGCacatcttctccctccactg
cgTCTTCACGCAGTCCTGAAGTAAATTCAACCGTGGCTAAACTACCATCT
TTGCTACAACGAATCGCCCGTGATCTCTTGTCATTGTCTTTTACCCCCGG
ACTCCCAGCTCCCCCCTGCTGCGTATTAATGTCGTCTTCCTTGCCATTGC
TGGCATGAGTGGGAGCCAAGCCTTTCTGTTCGCTGGTTTGTTCTGAGAAG
GGACTTGGCGTCTCGCCAAAGGGAGCCCGTTCCGGAGAACTCCCTCCTAT
GAGTACGTCGGATACCACGGCTGAAGGCGATGCTGCAGATGAAGATGGCA
TAGATGGAACAATAATTGTGCCATGCGGATCAAAGTCGTGcaggcgccgc
cgccatgcACGCACCAGGCCATTGAAACGCTTGGTACTGATTCGGGCATG
AATGTCCGGTGTTCTTGGATCTGTACGTCGTCGGAGTTCCTTTGGAATTA
TCTCCTTATAACGGTCGTATCCCAAGGTATTCTTGCCATAGTCGATCTGT
TTCTGTCGCTGCCGCAATCGATGAGGGTCAGTCTCCGCCTCGCCTTGTCC
TGACACTCCCGCCTGTGGTGTTATGGTATTCCTTCGGTCTCTCAAGGCTG
TACTGTTGACCTCAGGGGTTGTCCCTATTAAGCAACTGGGTAGGCGTGGC
TTTGTCTTCGTTGAACGGCAATCATCAGCCTCATAACGAAATCTCTTGCT
CGTGGGGCGCTTTAATAAAGACGAGAAAAAAGGGTTAGAGAAAATAAAGC
AAGGTAACGTGTCCGAGGAGCAGtcttcctgtcctttccGTACCTGCCGA
AAGCTGTCCATTTCTTTGCGATAATAGTGCACTTTCCCTAGCCTTTTGTA
GGTGTGGGGAGTGATGTGACTGCTTCGACC

Coding sequence (CDS) from alignment at CM002457.1:712436..715365+

>rna1468 ID=rna1468|Name=rna1468|organism=Nannochloropsis gaditana|type=CDS|length=2568bp|location=Sequence derived from alignment at CM002457.1:712436..715365+ (Nannochloropsis gaditana)
ATGCATTATTCGACTATGCGGCCGATCTTCTTGTGGATGAAAAAAATATA
CGCTAGGCCTTTGACTAAGCCATTGACACCAATCAGAAGCGCTACTGTTG
AGTGTTCTGTCGGCTTTTCTACCTGCTCCATGACCCCCGAAACTCGTCAA
CTCGCCGAGGGTGTCCTTCGAGGAAATCGGTTAGCTTTAAGTAGAGCGAT
TACTTTGATAGAGTCCACGAAGGAGAGTCATCGACTCGATGCTGAGGCAT
TGTTGGACCACGTTGTTTACGAGCGGAGCCGTCGAGTCCGAGAAAAGGGA
CGACTCAAACCGGGGAATTCCACGAGCAACGCAGCCTGTGTCGCTGATGA
GGGTAGAATCGGCACGTCTGAAAATGTTCGACCCTTGCGAGTCGGAATTG
CTGGGCCGCCAGGTGCTGGGAAATCGACTTTTATAGAGGCCCTAGGCAAA
TACCTGACGGATAGTAAGAAATTGCGTGTCGCTGTCATCGCAGTGGATCC
GTCATCAAGCCGCAGCGGGGGTTCCATTCTGGGAGATAAAACTCGTATGT
ACGAGTTGGCGAAAGACCCGAAGGCATTTGTGCGTGCTTGCCCAACCAGT
GGGGTTCTGGGTGGCGTGGCGCGCTACACGAATGATGTAGTCCTGCTTTG
TCAAGCCGCATCTTTTGACATAGTTTTCATTGAGAGCGTGGGGCTCGGCC
AATCCGAAACTATAATCGACCAGGCATCGGAcatgcttcttctccttgtt
cctcctgcgggcggggacgaatTGCAGGGCGTGAAGAAGGGAATCATGGA
GGTTGCGGACGTCATAGTCGTTAACAAAGCGGACGGCCATCTTCTCACGG
CTGCTCAGCACACAGCTGCAGCGTATCAGCACGCCCTTTGCTTTCAACGG
CGCAAATGGGACGCTTGGATGCCGAGTGTGACCCTCTGCTCGGCTTTGGA
GCGTCATCGCATCGCAGACGTATGGGAGCAGGTGTGTTCATGTAGTGACG
TTTTCAGGCGGTCCGGATATCTCCGCTTAAAGCGACAGAATCAGGATAAA
TATTGGGTCTGGAATAGTTTAGAGGACATTCTCGTGCGACGAGCGAGAAC
ATCCTCGAAAATAAAAGCCGGTGTGGAgcggatggaaaaagaatTGGGGA
AAGGGACCCTGACCCCCCGATCCGCAGCCGAGATCCTTCTCGCGGATTTC
TTCGAAGAGCAGAAGTCTCCGACGAAAAGTATGGCGCCGTTCCAACAGTC
AACATCATGCTTTCGTCCATCTTCTTCTGATTAAATGCATTATTCGACTA
TGCGGCCGATCTTCTTGTGGATGAAAAAAATATACGCTAGGCCTTTGACT
AAGCCATTGACACCAATCAGAAGCGCTACTGTTGAGTGTTCTGTCGGCTT
TTCTACCTGCTCCATGACCCCCGAAACTCGTCAACTCGCCGAGGGTGTCC
TTCGAGGAAATCGGTTAGCTTTAAGTAGAGCGATTACTTTGATAGAGTCC
ACGAAGGAGAGTCATCGACTCGATGCTGAGGCATTGTTGGACCACGTTGT
TTACGAGCGGAGCCGTCGAGTCCGAGAAAAGGGACGACTCAAACCGGGGA
ATTCCACGAGCAACGCAGCCTGTGTCGCTGATGAGGGTAGAATCGGCACG
TCTGAAAATGTTCGACCCTTGCGAGTCGGAATTGCTGGGCCGCCAGGTGC
TGGGAAATCGACTTTTATAGAGGCCCTAGGCAAATACCTGACGGATAGTA
AGAAATTGCGTGTCGCTGTCATCGCAGTGGATCCGTCATCAAGCCGCAGC
GGGGGTTCCATTCTGGGAGATAAAACTCGTATGTACGAGTTGGCGAAAGA
CCCGAAGGCATTTGTGCGTGCTTGCCCAACCAGTGGGGTTCTGGGTGGCG
TGGCGCGCTACACGAATGATGTAGTCCTGCTTTGTCAAGCCGCATCTTTT
GACATAGTTTTCATTGAGAGCGTGGGGCTCGGCCAATCCGAAACTATAAT
CGACCAGGCATCGGAcatgcttcttctccttgttcctcctgcgggcgggg
acgaatTGCAGGGCGTGAAGAAGGGAATCATGGAGGTTGCGGACGTCATA
GTCGTTAACAAAGCGGACGGCCATCTTCTCACGGCTGCTCAGCACACAGC
TGCAGCGTATCAGCACGCCCTTTGCTTTCAACGGCGCAAATGGGACGCTT
GGATGCCGAGTGTGACCCTCTGCTCGGCTTTGGAGCGTCATCGCATCGCA
GACGTATGGGAGCAGGTGTGTTCATGTAGTGACGTTTTCAGGCGGTCCGG
ATATCTCCGCTTAAAGCGACAGAATCAGGATAAATATTGGGTCTGGAATA
GTTTAGAGGACATTCTCGTGCGACGAGCGAGAACATCCTCGAAAATAAAA
GCCGGTGTGGAgcggatggaaaaagaatTGGGGAAAGGGACCCTGACCCC
CCGATCCGCAGCCGAGATCCTTCTCGCGGATTTCTTCGAAGAGCAGAAGT
CTCCGACGAAAAGTATGGCGCCGTTCCAACAGTCAACATCATGCTTTCGT
CCATCTTCTTCTGATTAA

Synonyms

Publications