EWM29226.1, cds1447 (CDS) Nannochloropsis gaditana

Overview
NameEWM29226.1
Unique Namecds1447
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:663074..663076 -
Alignment locationCM002457.1:661362..662981 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29226.1
Productzinc cchc domain containing 17
Orig transcript idgnl|cribi|Naga_100203g5.2710.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:663074..663076 -
CM002457.1supercontigCM002457.1:661362..662981 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR012340NA-bd_OB-fold
IPR022967S1_dom
Homology
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|585111747|gb|EWM29226.1| (zinc cchc domain containing 17 [Nannochloropsis gaditana])

HSP 1 Score: 1067.76 bits (2760), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0
Query:    1 MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSRSRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRSLSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRGRGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKEDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS 540
            MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSRSRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRSLSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRGRGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKEDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS
Sbjct:    1 MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSRSRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRSLSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRGRGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKEDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS 540          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|1158911716|ref|XP_020360819.1| (nucleolar protein of 40 kDa [Oncorhynchus kisutch] >gi|1158911718|ref|XP_020360820.1| nucleolar protein of 40 kDa [Oncorhynchus kisutch])

HSP 1 Score: 134.42 bits (337), Expect = 3.252e-32
Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0
Query:  129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQ--QRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI---GDDEFAALTRQPNQQKPSLLPLTT 307
            L+ +P +  I +GEV  V++YGAF++IPG+++QGLVHIS+L   R E V +V+D G +V++KV+         ++S SM+  +Q TG+DLDP N   ++D+  +R    G GR       +I + A++NTTC KC  +GH   +C   P G  Y LI   GDDE   L ++P    P+L+PL  
Sbjct:   14 LDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGR-------RITLEAVLNTTCKKCGCKGHFAKDCFSAP-GLQYDLIPEEGDDEPQQLQKEPI--NPNLIPLAV 187          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|736307914|ref|XP_010795154.1| (PREDICTED: LOW QUALITY PROTEIN: nucleolar protein of 40 kDa [Notothenia coriiceps])

HSP 1 Score: 132.88 bits (333), Expect = 3.825e-32
Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = 0
Query:  129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQP 295
            L  +P L  I +GEVV V++YGAFVR+PG++++GLVH+S++   R E   +++D G K+++KV+    +G   ++S SM+  +Q TGQDLDP N +  +DQ+R        G      +I + A++NTTCSKC  +GH   +C   P G  Y L+ ++E AA  +QP
Sbjct:   14 LEGLPPLHSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDMGEKIWIKVIGREIQGDKVKLSFSMKAVNQGTGQDLDPNNVNGDQDQRRRRKFRDHTG-----NRITLEAVLNTTCSKCGCKGHFTKDCFSTP-GLQYALVPEEEDAASRQQP 174          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|1211289607|ref|XP_021428106.1| (nucleolar protein of 40 kDa [Oncorhynchus mykiss])

HSP 1 Score: 134.035 bits (336), Expect = 4.184e-32
Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0
Query:  129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQ--QRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI---GDDEFAALTRQPNQQKPSLLPLTT 307
            L+ +P +  I +GEV  V++YGAF++IPG+++QGLVHIS+L   R E V +V+D G +V++KV+         ++S SM+  +Q TG+DLDP N   ++D+  +R    G GR       +I + A++NTTC KC  +GH   +C   P G  Y LI   GDDE   L ++P    P+L+PL  
Sbjct:   14 LDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGR-------RITLEAVLNTTCKKCGCKGHFAKDCFSAP-GLQYDLIPEEGDDEPQQLQKEPI--NPNLIPLAV 187          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|585646723|ref|XP_006811783.1| (PREDICTED: nucleolar protein of 40 kDa-like isoform X1 [Saccoglossus kowalevskii])

HSP 1 Score: 132.494 bits (332), Expect = 4.280e-32
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 0
Query:  131 AIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEG-GAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI-GDDEFAALTRQPN 296
             +PEL  ++ GEV  ++ YGAF++IP  ++ GLVH S +   R E V DV+  G KV+ KV+ + +EG    ++SLSM+  +Q  G DLDP    L +D++R       + G     KIE+G ++NTTC KC  +GH+  +C  +P GKSY L+  DD F     QP 
Sbjct:   12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKVKISLSMKNINQDDGTDLDPNQVQLVQDEKR-----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDDSFLTALSQPT 174          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|919000481|ref|XP_013404653.1| (PREDICTED: nucleolar protein of 40 kDa-like [Lingula anatina])

HSP 1 Score: 133.265 bits (334), Expect = 5.086e-32
Identity = 63/166 (37.95%), Postives = 103/166 (62.05%), Query Frame = 0
Query:  132 IPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQ 297
            +P+L  I++GE+  V+ YGAFV+IPG ++QGLVH SQL + R +   +V+D G  V+ KV+ + N+    ++ LSM+  +Q TG+DLDP      +D QR       +G +    KIE+GA+++TTC KC  +GH+  +C  +P  KSY L+ +D    + ++ ++
Sbjct:   20 LPDLYSIFKGEISSVQPYGAFVKIPGLKKQGLVHKSQLSQSRVDNPAEVVDVGESVYCKVITLEND----KIGLSMKVVNQGTGKDLDPNQVQSSQDAQR-----RKQGFISKQDKIELGAVLDTTCRKCGGKGHLSQDCFHIPGQKSYELLTEDPLETVIKEKHE 176          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|929311700|ref|XP_014033585.1| (PREDICTED: nucleolar protein of 40 kDa [Salmo salar] >gi|929311702|ref|XP_014033586.1| PREDICTED: nucleolar protein of 40 kDa [Salmo salar] >gi|929311704|ref|XP_014033587.1| PREDICTED: nucleolar protein of 40 kDa [Salmo salar])

HSP 1 Score: 133.65 bits (335), Expect = 5.776e-32
Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0
Query:  129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQ--QRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI---GDDEFAALTRQPNQQKPSLLPLTT 307
            L+ +P +  I +GEV  V++YGAF++IPG+++QGLVHIS+L   R E V +V+D G +V++KV+         ++S SM+  +Q TG+DLDP N   ++D+  +R    G GR       +I + A++NTTC KC  +GH   +C   P G  Y LI   GDDE   L ++P    P+L+PL  
Sbjct:   14 LDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGR-------RITLEAVLNTTCKKCGCKGHFAKDCFSAP-GLQYDLIPEEGDDEPQQLQKEPI--NPNLIPLAV 187          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|585646727|ref|XP_006811784.1| (PREDICTED: nucleolar protein of 40 kDa-like isoform X2 [Saccoglossus kowalevskii])

HSP 1 Score: 131.339 bits (329), Expect = 9.381e-32
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 0
Query:  131 AIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEG-GAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI-GDDEFAALTRQPN 296
             +PEL  ++ GEV  ++ YGAF++IP  ++ GLVH S +   R E V DV+  G KV+ KV+ + +EG    ++SLSM+  +Q  G DLDP    L +D++R       + G     KIE+G ++NTTC KC  +GH+  +C  +P GKSY L+  DD F     QP 
Sbjct:   12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKVKISLSMKNINQDDGTDLDPNQVQLVQDEKR-----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDDSFLTALSQPT 174          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|1000715578|ref|XP_015610156.1| (PREDICTED: nucleolar protein of 40 kDa-like [Cephus cinctus])

HSP 1 Score: 132.88 bits (333), Expect = 9.905e-32
Identity = 66/173 (38.15%), Postives = 107/173 (61.85%), Query Frame = 0
Query:  134 ELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGK--IEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLP 304
            +L +I+ GE+  V++YGAFVRIPG  +QGLVH SQ+     + V DV+  G +V+ K++ + ++G   ++ LSM++ +Q  G DLDP    L++D+QR       R  + P+ +  IE+ A++NTTCSKC   GH+  +C   PDGK Y L+ + E  ++ ++P   +P  +P
Sbjct:    5 QLNQIFRGEIAAVQNYGAFVRIPGCSQQGLVHRSQISTSHVDDVADVLQRGDRVWCKIISLGDDG---KIGLSMKHVNQGNGSDLDPNGVQLQKDEQR-------RKTIVPNKRKVIELQAVLNTTCSKCGTPGHLSNDCFMTPDGKKYELLPEIEEESIPQKPTDTQPEKIP 167          
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|699694068|ref|XP_009905712.1| (PREDICTED: nucleolar protein of 40 kDa [Picoides pubescens])

HSP 1 Score: 131.339 bits (329), Expect = 2.400e-31
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 0
Query:  129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI 283
            + A+PEL  I++GEV  V  YGAFV+IPG +RQGLVH +Q+   R EK  +++D G KV+VK++    +    ++SLSM+  +Q TG+DLDP N  L++D++R             S KI + A++NT C KC  RGH   EC   P G  Y LI
Sbjct:    1 MEALPELYAIFQGEVATVTEYGAFVKIPGCRRQGLVHRTQMSSCRVEKPSEIVDVGDKVWVKLIGKEMKDDKVKLSLSMKVVNQGTGKDLDPNNVALEQDERRKRSFRD-----YSSQKITLEAVLNTVCKKCGCRGHFAKECFVQPGGTKYSLI 150          
The following BLAST results are available for this feature:
BLAST of EWM29226.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111747|gb|EWM29226.1|0.000e+0100.00zinc cchc domain containing 17 [Nannochloropsis ga... [more]
gi|1158911716|ref|XP_020360819.1|3.252e-3239.67nucleolar protein of 40 kDa [Oncorhynchus kisutch]... [more]
gi|736307914|ref|XP_010795154.1|3.825e-3240.12PREDICTED: LOW QUALITY PROTEIN: nucleolar protein ... [more]
gi|1211289607|ref|XP_021428106.1|4.184e-3239.67nucleolar protein of 40 kDa [Oncorhynchus mykiss][more]
gi|585646723|ref|XP_006811783.1|4.280e-3239.88PREDICTED: nucleolar protein of 40 kDa-like isofor... [more]
gi|919000481|ref|XP_013404653.1|5.086e-3237.95PREDICTED: nucleolar protein of 40 kDa-like [Lingu... [more]
gi|929311700|ref|XP_014033585.1|5.776e-3239.67PREDICTED: nucleolar protein of 40 kDa [Salmo sala... [more]
gi|585646727|ref|XP_006811784.1|9.381e-3239.88PREDICTED: nucleolar protein of 40 kDa-like isofor... [more]
gi|1000715578|ref|XP_015610156.1|9.905e-3238.15PREDICTED: nucleolar protein of 40 kDa-like [Cephu... [more]
gi|699694068|ref|XP_009905712.1|2.400e-3143.23PREDICTED: nucleolar protein of 40 kDa [Picoides p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1450rna1450Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications