EWM29226.1, cds1447 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|585111747|gb|EWM29226.1| (zinc cchc domain containing 17 [Nannochloropsis gaditana]) HSP 1 Score: 1067.76 bits (2760), Expect = 0.000e+0 Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0 Query: 1 MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSRSRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRSLSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRGRGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKEDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS 540 MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSRSRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRSLSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRGRGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKEDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS Sbjct: 1 MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSRSRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRSLSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRGRGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKEDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS 540
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|1158911716|ref|XP_020360819.1| (nucleolar protein of 40 kDa [Oncorhynchus kisutch] >gi|1158911718|ref|XP_020360820.1| nucleolar protein of 40 kDa [Oncorhynchus kisutch]) HSP 1 Score: 134.42 bits (337), Expect = 3.252e-32 Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0 Query: 129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQ--QRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI---GDDEFAALTRQPNQQKPSLLPLTT 307 L+ +P + I +GEV V++YGAF++IPG+++QGLVHIS+L R E V +V+D G +V++KV+ ++S SM+ +Q TG+DLDP N ++D+ +R G GR +I + A++NTTC KC +GH +C P G Y LI GDDE L ++P P+L+PL Sbjct: 14 LDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGR-------RITLEAVLNTTCKKCGCKGHFAKDCFSAP-GLQYDLIPEEGDDEPQQLQKEPI--NPNLIPLAV 187
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|736307914|ref|XP_010795154.1| (PREDICTED: LOW QUALITY PROTEIN: nucleolar protein of 40 kDa [Notothenia coriiceps]) HSP 1 Score: 132.88 bits (333), Expect = 3.825e-32 Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = 0 Query: 129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQP 295 L +P L I +GEVV V++YGAFVR+PG++++GLVH+S++ R E +++D G K+++KV+ +G ++S SM+ +Q TGQDLDP N + +DQ+R G +I + A++NTTCSKC +GH +C P G Y L+ ++E AA +QP Sbjct: 14 LEGLPPLHSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDMGEKIWIKVIGREIQGDKVKLSFSMKAVNQGTGQDLDPNNVNGDQDQRRRRKFRDHTG-----NRITLEAVLNTTCSKCGCKGHFTKDCFSTP-GLQYALVPEEEDAASRQQP 174
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|1211289607|ref|XP_021428106.1| (nucleolar protein of 40 kDa [Oncorhynchus mykiss]) HSP 1 Score: 134.035 bits (336), Expect = 4.184e-32 Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0 Query: 129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQ--QRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI---GDDEFAALTRQPNQQKPSLLPLTT 307 L+ +P + I +GEV V++YGAF++IPG+++QGLVHIS+L R E V +V+D G +V++KV+ ++S SM+ +Q TG+DLDP N ++D+ +R G GR +I + A++NTTC KC +GH +C P G Y LI GDDE L ++P P+L+PL Sbjct: 14 LDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGR-------RITLEAVLNTTCKKCGCKGHFAKDCFSAP-GLQYDLIPEEGDDEPQQLQKEPI--NPNLIPLAV 187
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|585646723|ref|XP_006811783.1| (PREDICTED: nucleolar protein of 40 kDa-like isoform X1 [Saccoglossus kowalevskii]) HSP 1 Score: 132.494 bits (332), Expect = 4.280e-32 Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 0 Query: 131 AIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEG-GAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI-GDDEFAALTRQPN 296 +PEL ++ GEV ++ YGAF++IP ++ GLVH S + R E V DV+ G KV+ KV+ + +EG ++SLSM+ +Q G DLDP L +D++R + G KIE+G ++NTTC KC +GH+ +C +P GKSY L+ DD F QP Sbjct: 12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKVKISLSMKNINQDDGTDLDPNQVQLVQDEKR-----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDDSFLTALSQPT 174
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|919000481|ref|XP_013404653.1| (PREDICTED: nucleolar protein of 40 kDa-like [Lingula anatina]) HSP 1 Score: 133.265 bits (334), Expect = 5.086e-32 Identity = 63/166 (37.95%), Postives = 103/166 (62.05%), Query Frame = 0 Query: 132 IPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQ 297 +P+L I++GE+ V+ YGAFV+IPG ++QGLVH SQL + R + +V+D G V+ KV+ + N+ ++ LSM+ +Q TG+DLDP +D QR +G + KIE+GA+++TTC KC +GH+ +C +P KSY L+ +D + ++ ++ Sbjct: 20 LPDLYSIFKGEISSVQPYGAFVKIPGLKKQGLVHKSQLSQSRVDNPAEVVDVGESVYCKVITLEND----KIGLSMKVVNQGTGKDLDPNQVQSSQDAQR-----RKQGFISKQDKIELGAVLDTTCRKCGGKGHLSQDCFHIPGQKSYELLTEDPLETVIKEKHE 176
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|929311700|ref|XP_014033585.1| (PREDICTED: nucleolar protein of 40 kDa [Salmo salar] >gi|929311702|ref|XP_014033586.1| PREDICTED: nucleolar protein of 40 kDa [Salmo salar] >gi|929311704|ref|XP_014033587.1| PREDICTED: nucleolar protein of 40 kDa [Salmo salar]) HSP 1 Score: 133.65 bits (335), Expect = 5.776e-32 Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0 Query: 129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQ--QRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI---GDDEFAALTRQPNQQKPSLLPLTT 307 L+ +P + I +GEV V++YGAF++IPG+++QGLVHIS+L R E V +V+D G +V++KV+ ++S SM+ +Q TG+DLDP N ++D+ +R G GR +I + A++NTTC KC +GH +C P G Y LI GDDE L ++P P+L+PL Sbjct: 14 LDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGR-------RITLEAVLNTTCKKCGCKGHFAKDCFSAP-GLQYDLIPEEGDDEPQQLQKEPI--NPNLIPLAV 187
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|585646727|ref|XP_006811784.1| (PREDICTED: nucleolar protein of 40 kDa-like isoform X2 [Saccoglossus kowalevskii]) HSP 1 Score: 131.339 bits (329), Expect = 9.381e-32 Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 0 Query: 131 AIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEG-GAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI-GDDEFAALTRQPN 296 +PEL ++ GEV ++ YGAF++IP ++ GLVH S + R E V DV+ G KV+ KV+ + +EG ++SLSM+ +Q G DLDP L +D++R + G KIE+G ++NTTC KC +GH+ +C +P GKSY L+ DD F QP Sbjct: 12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKVKISLSMKNINQDDGTDLDPNQVQLVQDEKR-----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDDSFLTALSQPT 174
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|1000715578|ref|XP_015610156.1| (PREDICTED: nucleolar protein of 40 kDa-like [Cephus cinctus]) HSP 1 Score: 132.88 bits (333), Expect = 9.905e-32 Identity = 66/173 (38.15%), Postives = 107/173 (61.85%), Query Frame = 0 Query: 134 ELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGK--IEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKPSLLP 304 +L +I+ GE+ V++YGAFVRIPG +QGLVH SQ+ + V DV+ G +V+ K++ + ++G ++ LSM++ +Q G DLDP L++D+QR R + P+ + IE+ A++NTTCSKC GH+ +C PDGK Y L+ + E ++ ++P +P +P Sbjct: 5 QLNQIFRGEIAAVQNYGAFVRIPGCSQQGLVHRSQISTSHVDDVADVLQRGDRVWCKIISLGDDG---KIGLSMKHVNQGNGSDLDPNGVQLQKDEQR-------RKTIVPNKRKVIELQAVLNTTCSKCGTPGHLSNDCFMTPDGKKYELLPEIEEESIPQKPTDTQPEKIP 167
BLAST of EWM29226.1 vs. NCBI_GenBank
Match: gi|699694068|ref|XP_009905712.1| (PREDICTED: nucleolar protein of 40 kDa [Picoides pubescens]) HSP 1 Score: 131.339 bits (329), Expect = 2.400e-31 Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 0 Query: 129 LNAIPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLI 283 + A+PEL I++GEV V YGAFV+IPG +RQGLVH +Q+ R EK +++D G KV+VK++ + ++SLSM+ +Q TG+DLDP N L++D++R S KI + A++NT C KC RGH EC P G Y LI Sbjct: 1 MEALPELYAIFQGEVATVTEYGAFVKIPGCRRQGLVHRTQMSSCRVEKPSEIVDVGDKVWVKLIGKEMKDDKVKLSLSMKVVNQGTGKDLDPNNVALEQDERRKRSFRD-----YSSQKITLEAVLNTVCKKCGCRGHFAKECFVQPGGTKYSLI 150 The following BLAST results are available for this feature:
BLAST of EWM29226.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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