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Properties
| Property Name | Value |
|---|
| Product | zinc cchc domain containing 17 |
| Orig transcript id | gnl|cribi|Naga_100203g5.2710.mrna |
| Orig protein id | gnl|cribi|Naga_100203g5.2710 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:661204..663302 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1450 ID=rna1450|Name=rna1450|organism=Nannochloropsis gaditana|type=mRNA|length=3651bp
AGGCTTTACCAGAAAATCTCTGTTCGGAAGTCGGCTTTTGGTGAGCTGGT
CAGCCGAAAGACGAGGAGCTGCTAAGTTTTCCTTTCAAGTCCTCCACCCC
ATCTTGAAAAAGTCGAATCTCACGGACATATAGTATGCATCGCACCGTGC
TTCGGGGAAGAGTTTTAGCGGCGGCTTCCGTCTCCCGTCTTGGAGGCGTG
GCGCATCGGTCTGCGCCAGTATTTTTGCACTTGAGGGCGCAAGTAAGGCA
GTACACCCGGGAAGGCGATGGCGACAACCCTGCACCAGGGGAGAATAAGT
CATGGGTTCCGGTTGAGGACGCCTCTCTACAGAAAGTGACTCGACAAGCA
CTGGTCCATGAACTAATGCAAGTGCAAATGTCCACGGCGAATCAGGTGGT
TCCTTGGTTTTTAAACCAGATGCCGTCCTCCTACTTTCGACAAATCCCAG
AGGAAGTACGCGTCAAGCACTTGCAGGCCATCTGCGCCTTGCAGGACACG
GGCAACAACACCAATATCATCCTTAAGTCTGACAACCCTGATGGCCGCCG
CGAGATGACGTTTATCCGATCGGGCAACTTCACGGGCCAGCTCCGGGAGA
TGATCTCACTGCTCCCTCGGGACTTCGGGCCTCTCAGTCGGGTCAAGGTC
TTCACCTCCTCCGACGAGAGCCTGGTGCTCAACGTTTTCACGGCTGATTC
TAAGGCAGATGACGCTTTGGAATCTTCGGCTCAAGATCGAGAGGCGATCT
TAAAGTACGCAGCTGAGGTGCAGGCAGGCCAATACCAAGGCGACCCTCGC
CATGCCGCTCCCTCCCCGAGACTGGAGCCCGGGCCCCTCAATGCCTACAT
TGACCTCTGCACGCGATTTCACGTGGCCACATCCAATCCTCGGCGTTTTG
TGCGCATCAAGCAGCTGTACGACAAAATTGCAGGCTCTGAAAATTGTGCT
GTGGACGTGGAGGCTTACGAGCCCGACACGTCCGCCAAGGACTCCAGATT
CTGGGTGAGCCTGGCACAAACCAACGTCTTGCCCCGCGTAGGTCTCGATA
AGTGCCTGAAGCTCTTCAAGCTCCACAACCTGGACGTCCTCCGCTGTCAC
ATGGACCGCGTCAACGACCCGGGCAATGGTCAAGTCTGCCTTCTTCGGAT
GCTCGTTCAGCTCCACGACACTGACCAGGAGCCCTGGCCCCTGGATGGGA
CGGAATGGACCACTCTCAAGCACGAGCTGCGCCGAATCAAGTGGCTGGAT
GACGCGACCATTGATCTTGCCACCACCAAGTGTCCGGCTCTCGGATTCGA
CCGCGCCGAGATAATCGTCGCCCTCGGGCACATGCTGCACGGGGTCCTCG
CCAAGCAGAATCTGTGGGCCTTCTCCAAGGCCAGCATTTCCACCAAGCTC
TCGGACCCGCGTATCGTCGTACACGCTGCAAAGATTGCGGATTTGTTTGC
CGCGAGATTTGACCCTGCGCACCCCCTGCCTCCCCAGGAGGTGGCGGACC
GCGCGTCGGCTCTACGCGCGGACGTCCGTCAAAGCGTGGAGGACAGCACC
ACTCTTGTCCTTCTGGACAAAATGGTGGACGTGGTTGAAAGCACTTACCG
CACAAACCTTTACATGCCTAACCGCTACAGCCTGGCGCTTCGCATCGACC
CGAAAATCATGATGGCACCTGGTGAGAACAGAGTTCTGCCATACGGCGTC
TTCTTCGTGCACGGCCGCCGATTTAACGGTTTCCACGTCCGCTTCCGAGA
TATCGCCCGGGGCGGTCTCCGCATCGTGAGTCCGCCGATGCCTGAGCAGG
TTGCAATTGAGTCGGCCAGGCAATTCGACGAGGCCTACGGACTTGCCTAC
GCTCAGCAACTCAAAAACAAGGACATTCCCGAGGGTGGATCCAAGGCAGT
GGTGCTGGTGGACACCGTGAACGTCCAGGCCAAGTCTCGAGATTTCGCCA
AGCGAAAGGCCGTGAAAGGCTTCGTGGACGGGCTGCTTGACCTCATCACC
GAGACGGAGGAGACCAAGGCCCATATTGTCGACTACTGGGGCCGCCGCGA
GTACCTGTACCTGGGTCCCGACGAGCAGATCATCCCGCAGGACATCACGT
GGATCGTGAACCAGGCACAGAAGCGGAGCTACACCAATCCTTCCACCTTT
ATGTCCTCCAAAGCCGACACGGGCATCAATCACAAGGTCTACGGCGTGAC
CAGTGAAGGTATCGCTGTCTTCTTGGCAGTGGGTCTGAAGCGCTTGGGCC
TCAACCCGCACGAAGACCCTTTCACAATCAAGCTAACGGGTGGCACAGAC
GGAGATGTGGCAGGGAACATGATCAAAATACTCGCACGCGACTACGGGGC
CCGCGCTCGGGTCGTGGGCCTGGCGGATGGCACGGCCGTCGTGGAAGACC
CCGCGGGCTTGGACATGTCTGAACTCTTGCGCATGGTGGAGGGCTCGCTC
CCTTTGTCGGCGTTTGATCCCACCAGGCTGTCAGACAGGGGCGACTTTCA
TACCGTAGATACCGAGGAGGGCATTCGTCTCCGTAACACTATGCACAGTC
GGGTGGTGGCGGACGCCTTCATACCCGCGGGAGGGCGGCCCGGCACCATT
GATGGCACTAACTACCGCGCATTCCTGCAAGGCCCTGATTACAAGGTGCC
AAGCTCTCGCCTCATCGTGGAAGGAGCTAACATTTTCATCACGCCCGAGG
CTCGCAAGAAGCTCTTCGAAGAGGCGGGAGTGCTCATCATAAAGGACTCA
TCGGCCAACAAGTGCGGGGTCATCTGCTCCTCGTTTGAGATCGCTTCCTC
CATGCTTCTCACCGATGCTCAGTTCAAGGAGCATAAAGAAGAAATTGTCG
CCCAGGTCCTGGAGAAGCTCCGTTATTACGCTCGTGTCGAAGCCGAGCTG
CTTTTCCGAGAGTTCGCAACCTATCCCGGGCAGCTTCCTTACTTTAGTGA
GCGCATTTCTAATGCAATCAACTTGGCCCGCGACACACTCACAGTAGGCC
TTGAAAGTATGAGCGAAGAGCAATATCAGGACCTTTTGCCTCTTTTTAAA
GAGCATTTGCCTCCCACAGTGGTTGCGCTCGGCTTCGATCAAGTTCGAGA
AAAGGTACCTGCGCAATACATCACGAATGCCTTCGCTTGCTGCTTGGCCA
GCCGCATTGTCTACCGGGAGGGAACCAAATTCTTCGAGTCTCAGCCCCGC
GAACGCTTGGCTGAGCTCTGCTTGCGTTACCTCGATGAAGAGCGTGAAGT
GCAGAGGCTTGTCCGGTGCCTAGAAAGCGGCAAGCTTGATCGTGACCAGT
TGAAGACGGTTCAGAAGATTCTCGACGTGGGTGGGGTTCGTTCTCTTCTG
TTTGCCTCAGAATAGTGAAAAAAATAGGGATACTACCATTGTAGAATGAA
GTTTTGAGATGTGTTGGTGTCATCACTGTTAATGTGACTCCTGAAAATGT
CTTCGTTTTCGAACACATCATCCGCATGCGAGCATATTCTATGCTGCGAC
GAGAAAAATTATACTTTTAGCTTTGCCTCTTATGAGAAAGACGTAGCTTG
GTTTGAACACGCGATTTTATTTATAGAATAGGAAAGCACACAAAAACGAT
CTACAATCACAGCTCCACCTGACTCTGTCTTCGGTGAAGGTGGGCTACGC
C back to topprotein sequence of rna1450 >rna1450-protein ID=rna1450-protein|Name=rna1450|organism=Nannochloropsis gaditana|type=polypeptide|length=540bp
MPRGRSRSRSLSRSPNVGDRDKSKTSLRQDGRRSAGPRSPTSRGRRSRSR
SRFRDAFPRSRRGRSERSRSRDRSKDRFFRKSSHSPDSRPSRRRRGFSRS
LSPSPERRQLERGRLEDKIIPQNGSGGLLNAIPELGKIYEGEVVKVESYG
AFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNEGGA
PRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEV
GAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQPNQQKP
SLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRAS
PPANDRPSRFQEPRLEMPRNDKRGGGLRGSNAFERGEGGGQGVVGMAGRG
RGRGATLPAWMTSGAGPSAPAEVVDIERRSRESSRRSEGRKDERRSRKKE
DSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHS
RSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHKHS back to topmRNA from alignment at CM002457.1:661204..663302- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1450 ID=rna1450|Name=rna1450|organism=Nannochloropsis gaditana|type=mRNA|length=2099bp|location=Sequence derived from alignment at CM002457.1:661204..663302- (Nannochloropsis gaditana)
TCATCATTTTCTGTCTTCATGGTGCACTTATCTCTTGTCTTGGCTCAAAG
AGCGCGTTTCTAGGGAACGTGGGATTTTCAAGGATCTTTCTCGGCTAGTG
AAACGAGAAATCGTTTTGGAAAAGGGCAGCTTCATCTCTTCTGAACTAGA
GTTAGTTGCAGAGGGCGCGCAGGAAGTCTAAAATTTCGAAATCCCTCTTG
TGCCGTCTGTCAATCACCCTACGGAGATGGTAAGTCTCTTCTGCTACCGA
TGCGCGCTCAAAGATGCTCACCGCCTCTCTCACCATCACCACTCGTCCCC
GACCCTTTCCACATAACACAGCCTCGCGGGCGCTCTCGCTCTCGGTCCTT
ATCCCGCTCTCCAAACGTGGGGGACAGAGACAAGTCGAAGACTAGCTTAC
GCCAGGATGGTCGTCGCAGTGCCGGCCCGCGGTCTCCGACATCCAGGGGC
CGCAGGTCTCGCTCGCGCTCTCGGTTCAGAGACGCTTTTCCGCGGTCAAG
ACGAGGACGCTCTGAACGCAGCCGGAGCCGTGACCGCAGTAAAGACCGCT
TTTTCCGAAAGTCGTCGCATTCCCCTGACTCACGTCCATCCCGCCGCCGA
CGTGGTTTTTCTCGCTCCCTCTCACCTTCCCCAGAGCGGCGTCAACTTGA
AAGAGGTAGACTGGAAGATAAGATCATCCCTCAAAATGGCAGCGGCGGAT
TACTCAATGCAATTCCCGAGTTGGGAAAGATCTACGAGGGAGAAGTTGTG
AAGGTCGAAAGCTATGGCGCCTTCGTGCGCATCCCTGGCTTTCAGCGCCA
AGGACTGGTGCACATTAGTCAGCTGCAGAAAGGAAGGACAGAGAAGGTGG
ACGATGTGATCGACACGGGTCACAAGGTGTTCGTGAAGGTGGTAGAGGTG
ACAAACGAGGGTGGTGCCCCGCGAGTAAGCCTCTCGATGCGGTACGCCCA
TCAATCCACGGGCCAGGACCTGGACCCCGGGAACGAGGACCTTAAGAGGG
ATCAACAGCGGGGGGGGGGCGGAGGCGGCGGGCGTGGGGGTCTTCAGCCC
AGCGGAAAGATCGAAGTTGGGGCCATCGTGAACACCACGTGCAGTAAGTG
CAAGGTCCGCGGCCACATGCCCTTCGAATGCCGAGGCCTGCCCGACGGCA
AGAGCTACGGACTCATAGGGGATGACGAGTTCGCCGCCTTGACCCGGCAA
CCCAACCAGCAGAAACCCTCTCTGCTTCCTTTGACTACCACAGCGGGGCG
GGGCCGAGGGCGAGCCATGCTAACGCCGGCGTGGATGTCGAGGCAGGGGC
TCTCCTTGGAGGGGGCCAAGCGGCCTCAGCCCGACCTCGCCGCACTCTTC
TCGAAATCACGAGCCTCTCCACCTGCAAATGACAGGCCTTCTCGCTTTCA
GGAACCGCGCTTGGAAATGCCCAGAAACGACAAGCGTGGCGGCGGGCTTC
GCGGCTCGAATGCCTTCGAGAGGGGAGAGGGTGGCGGGCAGGGGGTCGTC
GGCATGGCTGGAAGAGGTCGAGGTCGCGGTGCGACGCTGCCGGCTTGGAT
GACTTCGGGCGCAGGTCCCTCCGCCCCCGCGGAAGTCGTAGACATAGAAC
GTCGGAGCAGGGAGTCGTCCAGACGGTCTGAAGGGAGGAAGGATGAGAGG
CGCTCGAGGAAAAAAGAGGATTCTGAAAGCCAGAAAAGGAAGCGGAGTGA
TCGAGATGAAAATCGGAAAGAGAAGAAACACCACAAAGATAAGGATAGAA
AGAAGGACAGGAAAAAAGAAAAGGTGAAGCACAAGCACAAGCACGAAATG
AGAAGCCGTAGTCATAGTCGCAGCCGCACAAGGCACCGGCATTCCCGCTC
CCGTTCTAGGTCGCCGAAATTTCGTAGTACGAGCGAAGCCTGCCGCGTAT
TGGAAGCGTACGAGCGCAAACATCGACACAAGCACTCGTAATATCCTGAC
ATCTTGTGCTGCGTGGCTGCTGCAATAGCGTCGTCGCGTCTCATACAAAA
GCATTTCTCATATACTAAAGCATTCTTACTTCTTATGCTTCAAGGCATTA
GAGCCCTCAAAGTTTTCCCGAGGGGCACATACTTCTTTTATTTTCTATC back to topCoding sequence (CDS) from alignment at CM002457.1:661204..663302- >rna1450 ID=rna1450|Name=rna1450|organism=Nannochloropsis gaditana|type=CDS|length=3246bp|location=Sequence derived from alignment at CM002457.1:661204..663302- (Nannochloropsis gaditana)
CCTCGCGGGCGCTCTCGCTCTCGGTCCTTATCCCGCTCTCCAAACGTGGG
GGACAGAGACAAGTCGAAGACTAGCTTACGCCAGGATGGTCGTCGCAGTG
CCGGCCCGCGGTCTCCGACATCCAGGGGCCGCAGGTCTCGCTCGCGCTCT
CGGTTCAGAGACGCTTTTCCGCGGTCAAGACGAGGACGCTCTGAACGCAG
CCGGAGCCGTGACCGCAGTAAAGACCGCTTTTTCCGAAAGTCGTCGCATT
CCCCTGACTCACGTCCATCCCGCCGCCGACGTGGTTTTTCTCGCTCCCTC
TCACCTTCCCCAGAGCGGCGTCAACTTGAAAGAGGTAGACTGGAAGATAA
GATCATCCCTCAAAATGGCAGCGGCGGATTACTCAATGCAATTCCCGAGT
TGGGAAAGATCTACGAGGGAGAAGTTGTGAAGGTCGAAAGCTATGGCGCC
TTCGTGCGCATCCCTGGCTTTCAGCGCCAAGGACTGGTGCACATTAGTCA
GCTGCAGAAAGGAAGGACAGAGAAGGTGGACGATGTGATCGACACGGGTC
ACAAGGTGTTCGTGAAGGTGGTAGAGGTGACAAACGAGGGTGGTGCCCCG
CGAGTAAGCCTCTCGATGCGGTACGCCCATCAATCCACGGGCCAGGACCT
GGACCCCGGGAACGAGGACCTTAAGAGGGATCAACAGCGGGGGGGGGGCG
GAGGCGGCGGGCGTGGGGGTCTTCAGCCCAGCGGAAAGATCGAAGTTGGG
GCCATCGTGAACACCACGTGCAGTAAGTGCAAGGTCCGCGGCCACATGCC
CTTCGAATGCCGAGGCCTGCCCGACGGCAAGAGCTACGGACTCATAGGGG
ATGACGAGTTCGCCGCCTTGACCCGGCAACCCAACCAGCAGAAACCCTCT
CTGCTTCCTTTGACTACCACAGCGGGGCGGGGCCGAGGGCGAGCCATGCT
AACGCCGGCGTGGATGTCGAGGCAGGGGCTCTCCTTGGAGGGGGCCAAGC
GGCCTCAGCCCGACCTCGCCGCACTCTTCTCGAAATCACGAGCCTCTCCA
CCTGCAAATGACAGGCCTTCTCGCTTTCAGGAACCGCGCTTGGAAATGCC
CAGAAACGACAAGCGTGGCGGCGGGCTTCGCGGCTCGAATGCCTTCGAGA
GGGGAGAGGGTGGCGGGCAGGGGGTCGTCGGCATGGCTGGAAGAGGTCGA
GGTCGCGGTGCGACGCTGCCGGCTTGGATGACTTCGGGCGCAGGTCCCTC
CGCCCCCGCGGAAGTCGTAGACATAGAACGTCGGAGCAGGGAGTCGTCCA
GACGGTCTGAAGGGAGGAAGGATGAGAGGCGCTCGAGGAAAAAAGAGGAT
TCTGAAAGCCAGAAAAGGAAGCGGAGTGATCGAGATGAAAATCGGAAAGA
GAAGAAACACCACAAAGATAAGGATAGAAAGAAGGACAGGAAAAAAGAAA
AGGTGAAGCACAAGCACAAGCACGAAATGAGAAGCCGTAGTCATAGTCGC
AGCCGCACAAGGCACCGGCATTCCCGCTCCCGTTCTAGGTCGCCGAAATT
TCGTAGTACGAGCGAAGCCTGCCGCGTATTGGAAGCGTACGAGCGCAAAC
ATCGACACAAGCACTCGTAAATGCCTCGCGGGCGCTCTCGCTCTCGGTCC
TTATCCCGCTCTCCAAACGTGGGGGACAGAGACAAGTCGAAGACTAGCTT
ACGCCAGGATGGTCGTCGCAGTGCCGGCCCGCGGTCTCCGACATCCAGGG
GCCGCAGGTCTCGCTCGCGCTCTCGGTTCAGAGACGCTTTTCCGCGGTCA
AGACGAGGACGCTCTGAACGCAGCCGGAGCCGTGACCGCAGTAAAGACCG
CTTTTTCCGAAAGTCGTCGCATTCCCCTGACTCACGTCCATCCCGCCGCC
GACGTGGTTTTTCTCGCTCCCTCTCACCTTCCCCAGAGCGGCGTCAACTT
GAAAGAGGTAGACTGGAAGATAAGATCATCCCTCAAAATGGCAGCGGCGG
ATTACTCAATGCAATTCCCGAGTTGGGAAAGATCTACGAGGGAGAAGTTG
TGAAGGTCGAAAGCTATGGCGCCTTCGTGCGCATCCCTGGCTTTCAGCGC
CAAGGACTGGTGCACATTAGTCAGCTGCAGAAAGGAAGGACAGAGAAGGT
GGACGATGTGATCGACACGGGTCACAAGGTGTTCGTGAAGGTGGTAGAGG
TGACAAACGAGGGTGGTGCCCCGCGAGTAAGCCTCTCGATGCGGTACGCC
CATCAATCCACGGGCCAGGACCTGGACCCCGGGAACGAGGACCTTAAGAG
GGATCAACAGCGGGGGGGGGGCGGAGGCGGCGGGCGTGGGGGTCTTCAGC
CCAGCGGAAAGATCGAAGTTGGGGCCATCGTGAACACCACGTGCAGTAAG
TGCAAGGTCCGCGGCCACATGCCCTTCGAATGCCGAGGCCTGCCCGACGG
CAAGAGCTACGGACTCATAGGGGATGACGAGTTCGCCGCCTTGACCCGGC
AACCCAACCAGCAGAAACCCTCTCTGCTTCCTTTGACTACCACAGCGGGG
CGGGGCCGAGGGCGAGCCATGCTAACGCCGGCGTGGATGTCGAGGCAGGG
GCTCTCCTTGGAGGGGGCCAAGCGGCCTCAGCCCGACCTCGCCGCACTCT
TCTCGAAATCACGAGCCTCTCCACCTGCAAATGACAGGCCTTCTCGCTTT
CAGGAACCGCGCTTGGAAATGCCCAGAAACGACAAGCGTGGCGGCGGGCT
TCGCGGCTCGAATGCCTTCGAGAGGGGAGAGGGTGGCGGGCAGGGGGTCG
TCGGCATGGCTGGAAGAGGTCGAGGTCGCGGTGCGACGCTGCCGGCTTGG
ATGACTTCGGGCGCAGGTCCCTCCGCCCCCGCGGAAGTCGTAGACATAGA
ACGTCGGAGCAGGGAGTCGTCCAGACGGTCTGAAGGGAGGAAGGATGAGA
GGCGCTCGAGGAAAAAAGAGGATTCTGAAAGCCAGAAAAGGAAGCGGAGT
GATCGAGATGAAAATCGGAAAGAGAAGAAACACCACAAAGATAAGGATAG
AAAGAAGGACAGGAAAAAAGAAAAGGTGAAGCACAAGCACAAGCACGAAA
TGAGAAGCCGTAGTCATAGTCGCAGCCGCACAAGGCACCGGCATTCCCGC
TCCCGTTCTAGGTCGCCGAAATTTCGTAGTACGAGCGAAGCCTGCCGCGT
ATTGGAAGCGTACGAGCGCAAACATCGACACAAGCACTCGTAAATG back to top
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