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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100028g36.3295.mrna |
| Orig protein id | gnl|cribi|Naga_100028g36.3295 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:313959..317459 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1316 ID=rna1316|Name=rna1316|organism=Nannochloropsis gaditana|type=mRNA|length=3417bp
ATGGTCGTGTTATTCAGTACGAGCTGCGGAAGACACTCAGACAATGCTCT
TATAAAAGGGGTTGCGGCAGATCAGATACTTCCTCCTGTTGTCCATGCGG
AGCACTTGAGGGCCATGTATTTCCCATCACCGCCTCTTACCTCGCCGGCG
CAAACTCTCAATGAAAATAACGAGCTTATCTCTTCAAAGCGGCACACAGT
GCTGCCCGGGAGTCCCAGTTGCGTATCACACATTGAGCTTGGCAAGCCCC
TGAATTGTATGTCTGTCGCACGGCTACCAGGTGCAGGAGCTTTCTTTGCG
GCAGTGGGCGGCGCACAGATGTTGAAAATCATTAATGTGTCTCCCCTTGG
ATTAGCGGTCAAATCGAATCTCCGATTGACTCACAAGGTCACCTCCGAAG
TCAATTTCTCCATTCATGACGTGGAATGGTGCGTGAAAGACACTTCGCGT
GCTCTGCTCGCTTGCGGCGCTAGCAACGGCAATATTATTCTCTGGGATAT
TTCAAACCGAGATGGACGGCCTTCGCAAGAGAGAGTCATTGCCGCCCACC
CTCGCACCGTGAACCGCATTAATTGGCATCCTCAGGAGGAAGGCCTGCTC
CTCTCTGCGTCCCAGGACACGTCCATAAAGCTCTGGGACCGGCGAGGTCG
CCTGTACCACTGTCAAGCTACCTACCAACCCCGCGCAGAGGCTGTGCGTG
ACGTGCAGTGGCATCCCTCGAAGCCGGATTACTTCGCTGCGGCCTGCGAG
AGCGGTTCAGTCCAACTCTGGGATCGAAGGCAGGGGCAGGGGCCGGTCCA
GAAGCTGATGGGGCACAGCGGCTTGGTGCTGGCCTTGGAATGGCATTTGA
CAGAGCCATGGATACTGGCGACAGGGGCAAGGGACCGGACGGTGAAAGTC
TGGGACTTGAGCGACCAGTCCACGGGGAACGCGGTGTCCGAGGGTGGGGC
GGGGGGAGGGAAAGAGGAGGGCGGCGGGGTGGGCCGTGGGGGGATGAATG
GTGGCCGTTCGAAAGTACTGTGCCTGATCAATACCGTGTCAGCCGTGAAC
CGGATCAAATGGCGCCCCGGGTACCCCAAGCAGGTGGCCACGACCTCCTC
GGTTCAGGGCGACAACACGATCCATGTCTGGGACGTGGATCGACCGTATC
TGCCCCTGGCGACGTTTGAGGGCCACGAGGACGTATGTGGGAGCTTCGTC
TGGCTCGACACGCCGTCTTTGCCCGAGTGGGGCTCCCATGCCGATAGTGC
GCACGGGGAGGATGGGGCGGGGGAGGGTGCGGGGAATGGTAGCAGCCATC
CCTCCCCCGGGGCCCAGCGTCAAGTGCAGCAACAGCAGCAGCACGAGCAG
CTTTCCAGGCGACCACGGCCCTCTGGCTTCTTTGGGAACTGGGGGGCAGT
CTGGGGCGAGACCTTCTCCCAAAGCAAAGGACAACGGGCGGGCTTGCAGG
AGGAGATGGATGGATGGACCTGTCTCGGGGTCTGGCGGCATCTGATCTCC
TGCGCAAGGGACGGCCGCGTCATTTTGCATTCATTGGCACAGGCTTCGCG
TCCCCACGACACGCTCACCCCCAGTGTGGTGTCCTTGAGCGTGCGGGGAG
AACTGCTGACGTCCCATGAACGGGTGGACCGCTCCGGCGCCTTTTTGGGC
CTACACGGAGGCAAGCGCCGAGCGCAGGGCTTGTTCGATGAGGAGGAGGG
AGGGGGGCACCCTGCTGGTGCCCAAGCCGAGGGCAAGCAAGGCATGGACA
AGGACGCCGGCGGAAGGGGGAAATCGACCCTCCAGCAACCACCAAACGTC
CGTGCTGACGCCGGGCGGACCTCGCCCTCCCATCCCCGACGTCCTCTCTA
CACTCCCTCTCCACTCTCCACCCCCTTTCCCTCCATCCCTGCAGCCCCAC
CTCAGCCTTCTAAATCCGTGCTTCAGGCTCCCAACATTCCTTCTCCGTCT
GGGGCCCGATCCGCGGACGAAAGGCCGTCGCCGTTTCCCGCAACAGGTGG
AGATGGAGGCCCCGGTCACGGTTTCGGGGCAGGGGCTAGCGTGGCCAATA
AAGTCTTCGACGTCGACGACTCATGTTGGCGACCACGCTTTTTGTATCGC
ATGGAATGGGACGAAGACTCTGAGCACACCCTGGCCGTGGCCAGGGCGAT
TGAAGGGCTGAGCTTGCTTCCGGATGGCCGCCCTGGGCGGATGGAAAAGA
ACAAGATGGACGGAAAGCCAAAAAGACATAGAGTTGGGAGAAGACTGAAA
GGAAATGGTACTGAATCCCAGGTCAAACCCATGCAGAACGATTCGGTGCC
CTCCTCTTCCGTGTCCTCTTCTTCGCATTTCGCCGACAGGATAGCGCGCT
TGGGCAAGAGGTATGTCCTGCGCCCTCGAGGCTGCCTGCTCCCGTTGCAG
TCTGTCGGGACGTGTTGCCGCGCTCGGGAGGACCTGTGCCATTATAACGC
CGAAGTTGCCCGCTTGGAAGGGCAGTGGAGGATGGCGCACGTATGGGAGA
TGCTTGGAGTCATCTTGTCGGGCCCCGGGGTGGGAGGGAAGGAAGGGCGG
GGGGTTTCGGAAGATGAAGACACGGGTATCAATTTTGCCACTGGCACCCA
CGGTCATCCTATGATGGATAAAGAGGACAGCAAAGGCAAACGAAGCGGTC
GGAAAGAAACGCGTGACAAGCTGTCGCAGGAGGCCTGCATGGTGGGCGCC
GTTTCCACCACTTCGTTTCCGAGTGTTCTCTTGCACGGGCCGCTCGACAC
TCCTACCACGTCCTCCACATGCTTGCAGCTCCTTCGTCGGGAGATCCTCG
GCCATGTGGTGGAGGAACTGCTGGAGGAGGGGGAACTTCAGAACTGTGTG
GCTTTATTCGAAGTGATCCAGTCCACTGGGAAAGCTCTTCCCGGCGAGTC
CTTGTCAGACCTGATCGGCTTTCGGCCGGAGCGCGTCCGCGAGATCTATG
TGGGGTACCTGGAGCTCTTACAACGCCTTACCCTGTGGGAAGTGGCGAAT
GAGCTGGTGGAGCATTTGGAGGACCGGTACATCCACGGGCTCTACGCGAG
CAACACTAACATCTACGCCGCTGCCGAGCGTTGGTCTCACAATGTGCCCT
GTGCCTCCAACCTGTGCGAGGAGTTTATGTGTGGTGTCCTGGCTGCGGGC
ACGGCGGGCATATCGATCATCTCCAGGAATGGTTCGCCGCCAACTCGGAG
TGCCCCACGGGATGTGGACATCGTTGTCATCACGGAGGAAAATGAATGTG
ACGGCAGAGAGAGAGAGAGAAGGGATTCTGGCTTTCTTCACCGAGTTGGC
ATACAGGGGCGTGTGCTGCCGGGATGTCATGGCCATGAACTAGCTGTTAG
GATTAGGGTTAGGGCCTGTACGATACCAAGAGAAGAACGCGGGATCAGGC
CGTGGCTACTGAATTGA back to topprotein sequence of rna1316 >rna1316-protein ID=rna1316-protein|Name=rna1316|organism=Nannochloropsis gaditana|type=polypeptide|length=736bp
MTLWTSPVPMHMAGKQVTAPRMETAVQDGEPSNTVSVVLASGAGDGAGSN
LGSGASNNFTHSNSSASGSTTSTAPHQRRQTLANVPSAAEVHGRQEKWLE
FAPTSPQRRASFVDEPGVVDGNPFEIFKEPARADHFGSQSFYEAGASYSA
KQHAPPPSAASSVVSRPASATRLTASSIPLGPERLDSSYRPSSSTGNPFC
EAPLSPIRYNKPIAKVELSPQSTALSAVAFSALDPLKRTESPTASVPLDQ
LKISAYNREQEVLAAAKAAEEQGKQFQESEHYRRQLQLQQPQPTAHFQQN
LPQPQGQAEQPHPQQGDWSAWPMQQGVLQAASQAQPASSTEWDAFGASPT
VFPQKAPPSQPTFDNNFGWQSIPGAFTTTTPNSDDFRVLGGHAAGGGEDG
GEGKRGGGAIFDPVRQKSLADASFDLSVGGFFPEEPTGAHTNAGTGSRRS
SGAGHAEEEEEEGGLEDHAEEEDDDSMGGDGTGELEMQEEHFGEGGSGLE
GRQRSASGMYYEVAFTAPTTFGMLLERKDEWVRGSVARRERTVVTLVVEG
GEAEAKGVAVGSMIVSINGEEVTGLTYKETLERIKGQARPMQVVFERESL
NEDVLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVLQIYDSKR
AYHNTVVALFQRKRPSHRVKTYALTYAFKLSQLQERRMDGHTAPLKFFAF
MTPAARFKSVRIASETRKSVQGLQERFSRFAGKSTR back to topmRNA from alignment at CM002457.1:313959..317459- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1316 ID=rna1316|Name=rna1316|organism=Nannochloropsis gaditana|type=mRNA|length=3501bp|location=Sequence derived from alignment at CM002457.1:313959..317459- (Nannochloropsis gaditana)
TGCGGACAGACTGTCTCGTTTGGCAGGGTCCCTCCAGGGCACTACTGTGG
CTTCTGCGCCTTGCCCCAGCCATTATCGCGGGGCGCTAGCCCTGGCACTT
TCCACATTAATACATTGGAGGAGACTGCGGCTGGATGTGAAACATGCCTA
TGTATTTTATTTCGTGACAAACGTTATTTCCTCTCGTGGCAAGGTTTTAC
AAGGATGGTGTCTCCTAGTGTGTCACCAGGCGGATACTTTGGAAGGACCC
CTAAACTGGACGTCCGAAGCGTTCTGTCCCCTCCCTCGCTCGATAAAGAG
CTAACTATCACCTTGCGTTACCCACTCGAAGAAGGAGAAGTTACGGACAA
AATTTGCATTGCTTCAAGACGCGACTGACTTTCCATCCCTCACGCTATCC
GGCCTCTTCCCCCCCAACTCTTGCAGCGAGTCGCAAGGCCTCATGACGCT
GTGGACGAGTCCCGTCCCCATGCACATGGCAGGCAAGCAGGTGACAGCAC
CGCGCATGGAGACCGCGGTTCAAGACGGGGAGCCTTCCAACACAGTGTCG
GTAGTACTCGCTTCCGGCGCAGGCGATGGGGCGGGTAGCAACCTGGGCAG
CGGTGCATCGAACAATTTTACTCACAGCAACAGCAGTGCGAGCGGCAGTA
CGACCAGTACTGCTCCCCACCAACGACGACAAACACTAGCTAATGTCCCA
TCTGCCGCCGAAGTGCATGGTAGGCAGGAGAAGTGGCTGGAATTTGCACC
AACTTCTCCCCAGCGCCGTGCTTCCTTTGTGGACGAGCCGGGAGTTGTGG
ATGGGAACCCCTTTGAGATCTTTAAGGAGCCTGCGCGGGCTGACCATTTT
GGAAGTCAAAGTTTTTACGAAGCAGGGGCATCCTACTCGGCGAAGCAACA
TGCCCCGCCTCCTTCTGCAGCATCCTCGGTAGTGTCCCGCCCTGCCTCGG
CGACTCGCCTGACTGCGTCGTCCATCCCACTGGGCCCGGAGAGGCTTGAC
TCGAGCTACCGCCCTTCTTCCAGCACAGGCAATCCATTCTGCGAAGCTCC
TTTGAGCCCGATCCGCTACAACAAGCCCATTGCCAAGGTGGAGCTCTCCC
CTCAGAGCACCGCCTTGTCGGCCGTGGCGTTCTCAGCGCTTGACCCTCTG
AAACGCACAGAATCGCCGACCGCGTCTGTGCCCTTGGACCAGCTCAAAAT
CTCGGCCTACAACCGGGAACAGGAGGTGCTGGCGGCGGCAAAGGCTGCAG
AAGAGCAAGGGAAGCAGTTTCAGGAGTCAGAACACTACAGACGACAACTG
CAGCTGCAGCAGCCACAGCCCACAGCACATTTCCAACAGAACTTGCCACA
GCCACAAGGACAGGCGGAACAACCACACCCACAGCAAGGGGACTGGAGCG
CGTGGCCCATGCAGCAAGGTGTGCTTCAGGCCGCCAGCCAAGCCCAGCCT
GCGTCGTCCACGGAATGGGATGCTTTCGGTGCTTCTCCGACGGTCTTCCC
GCAAAAGGCACCGCCCTCGCAGCCGACCTTCGACAACAACTTTGGGTGGC
AATCCATCCCCGGGGCCTTCACCACGACCACTCCCAACAGCGACGATTTC
AGGGTCCTGGGCGGGCATGCGGCGGGAGGAGGGGAGGACGGGGGGGAGGG
AAAGAGGGGAGGGGGCGCGATCTTCGACCCCGTCCGTCAGAAGTCCCTGG
CAGATGCTTCCTTTGATTTAAGTGTGGGGGGATTTTTCCCAGAGGAACCA
ACGGGTGCCCACACGAATGCAGGGACGGGGAGCAGGAGGAGTAGCGGGGC
AGGACACGCGGAGGAGGAGGAGGAGGAGGGGGGTTTGGAGGACCATGCCG
AAGAGGAGGACGACGATTCGATGGGGGGCGACGGGACTGGGGAGTTGGAG
ATGCAAGAGGAGCATTTCGGGGAGGGCGGGAGTGGATTAGAAGGGAGGCA
GCGGTCGGCGTCGGGTATGTACTACGAGGTGGCCTTTACGGCGCCCACCA
CCTTTGGCATGCTCTTGGAGCGTAAGGACGAGTGGGTGCGCGGGTCGGTG
GCGCGCCGGGAGAGGACGGTGGTGACCTTGGTGGTGGAGGGGGGGGAGGC
AGAGGCCAAGGGTGTGGCGGTGGGAAGCATGATCGTCTCGATAAATGGGG
AGGAGGTGACGGGCTTGACATACAAGGAGACCCTGGAGCGGATCAAGGGG
CAGGCGCGGCCCATGCAGGTGGTATTTGAGCGTGAGTCTTTGAATGAGGA
CGTGCTTCAGGGGTATTTCTTTGTTTCCAAGGGGCCCTTCTTCTCGAACC
CGACGACCATGGACAAATGGAAGCGTAAGTACATCGTGCTGGGAGGGCCG
ATTGCCAAGAAGAACGTGTTGCAGATTTATGACTCCAAACGGGCCTATCA
CAACACTGTTGTGGCCTTGTTTCAACGAAAAAGACCGTCGCATCGGGTCA
AGACGTACGCTCTGACCTATGCCTTTAAGCTCTCTCAGCTGCAAGAACGG
CGGATGGATGGACATACCGCTCCGTTGAAATTTTTCGCCTTTATGACCCC
GGCTGCCAGGTTCAAGTCGGTGCGGATCGCGTCGGAGACGAGAAAAAGCG
TGCAAGGCTTACAAGAGAGGTTCAGCCGTTTCGCGGGCAAATCGACACGC
TAACGAGACGAGCGCAATGAATGGAAATTCATTTTTATTTGGAATAGTTT
GTCGAGGGAAGGGGAATAGAGAATCTGGGTCGCCAAGGGAGAAGGAAGAT
TTGGGTTGGAAATGGACGTGATGGGATTGCGCGTCCATTACACTATGTCC
AAATGAAGACATGACGGGGGAAATTGAAAGAGAGATGGAAAGAGGATGGG
CTTTGCATCCGGGGGAAGGGAGCAGAAGATGGGTAGGCGGTGGATAAATC
CCTTACCTGAAAGGAAGGACGCGCATGAACGAGCAGCCATCTTGGGGAGA
GATCAGGGGAAAGGGGAAGTTGCAGAGGCCTAGGCTTAAGGCGCGAAAGC
TTCGACAGGGGATGTCGGCCATGCATGTGGAAAGCTTCGTGGGATAGTGT
GGTGGCATCCGGAGGAGTTGGAAGTCCTCCGGGTACCGGGATGTAAATTT
TGTTAACTTGCCGTATGCAAAAAATGTATGTAGAGGTGCCATCAAGACAG
TATTTGTGCTTGACCATGGAGCATTGGCCAATGCGCGATGATTCACCACG
GGCACATTTCTATGCGAGGTCATCGGAGGAAATTGCTTGAAGTCAAGAGG
AGAGAGACAGAGGTCTCATAAGAGATTCCAGGAAACAGAAAGCAGAAGCA
ACAGTAGAGATCAAAGGGGATGGCTTGCAGGACAAAATCGCCAGCAGTTT
TATTCTTTGGGTCTTGTGCGTCCGATTGTGCTCCAAACCTTTTGTGTGCA
TCTTGTATGCTCAATTACCACAGTCTATGTACAATGTCGGCCCCTTAGCA
TCCATCAATTCAGTAGCCACGGCCTGATCCCGCGTTCTTCTCTTGGTATC
G back to topCoding sequence (CDS) from alignment at CM002457.1:313959..317459- >rna1316 ID=rna1316|Name=rna1316|organism=Nannochloropsis gaditana|type=CDS|length=2211bp|location=Sequence derived from alignment at CM002457.1:313959..317459- (Nannochloropsis gaditana)
ATGACGCTGTGGACGAGTCCCGTCCCCATGCACATGGCAGGCAAGCAGGT
GACAGCACCGCGCATGGAGACCGCGGTTCAAGACGGGGAGCCTTCCAACA
CAGTGTCGGTAGTACTCGCTTCCGGCGCAGGCGATGGGGCGGGTAGCAAC
CTGGGCAGCGGTGCATCGAACAATTTTACTCACAGCAACAGCAGTGCGAG
CGGCAGTACGACCAGTACTGCTCCCCACCAACGACGACAAACACTAGCTA
ATGTCCCATCTGCCGCCGAAGTGCATGGTAGGCAGGAGAAGTGGCTGGAA
TTTGCACCAACTTCTCCCCAGCGCCGTGCTTCCTTTGTGGACGAGCCGGG
AGTTGTGGATGGGAACCCCTTTGAGATCTTTAAGGAGCCTGCGCGGGCTG
ACCATTTTGGAAGTCAAAGTTTTTACGAAGCAGGGGCATCCTACTCGGCG
AAGCAACATGCCCCGCCTCCTTCTGCAGCATCCTCGGTAGTGTCCCGCCC
TGCCTCGGCGACTCGCCTGACTGCGTCGTCCATCCCACTGGGCCCGGAGA
GGCTTGACTCGAGCTACCGCCCTTCTTCCAGCACAGGCAATCCATTCTGC
GAAGCTCCTTTGAGCCCGATCCGCTACAACAAGCCCATTGCCAAGGTGGA
GCTCTCCCCTCAGAGCACCGCCTTGTCGGCCGTGGCGTTCTCAGCGCTTG
ACCCTCTGAAACGCACAGAATCGCCGACCGCGTCTGTGCCCTTGGACCAG
CTCAAAATCTCGGCCTACAACCGGGAACAGGAGGTGCTGGCGGCGGCAAA
GGCTGCAGAAGAGCAAGGGAAGCAGTTTCAGGAGTCAGAACACTACAGAC
GACAACTGCAGCTGCAGCAGCCACAGCCCACAGCACATTTCCAACAGAAC
TTGCCACAGCCACAAGGACAGGCGGAACAACCACACCCACAGCAAGGGGA
CTGGAGCGCGTGGCCCATGCAGCAAGGTGTGCTTCAGGCCGCCAGCCAAG
CCCAGCCTGCGTCGTCCACGGAATGGGATGCTTTCGGTGCTTCTCCGACG
GTCTTCCCGCAAAAGGCACCGCCCTCGCAGCCGACCTTCGACAACAACTT
TGGGTGGCAATCCATCCCCGGGGCCTTCACCACGACCACTCCCAACAGCG
ACGATTTCAGGGTCCTGGGCGGGCATGCGGCGGGAGGAGGGGAGGACGGG
GGGGAGGGAAAGAGGGGAGGGGGCGCGATCTTCGACCCCGTCCGTCAGAA
GTCCCTGGCAGATGCTTCCTTTGATTTAAGTGTGGGGGGATTTTTCCCAG
AGGAACCAACGGGTGCCCACACGAATGCAGGGACGGGGAGCAGGAGGAGT
AGCGGGGCAGGACACGCGGAGGAGGAGGAGGAGGAGGGGGGTTTGGAGGA
CCATGCCGAAGAGGAGGACGACGATTCGATGGGGGGCGACGGGACTGGGG
AGTTGGAGATGCAAGAGGAGCATTTCGGGGAGGGCGGGAGTGGATTAGAA
GGGAGGCAGCGGTCGGCGTCGGGTATGTACTACGAGGTGGCCTTTACGGC
GCCCACCACCTTTGGCATGCTCTTGGAGCGTAAGGACGAGTGGGTGCGCG
GGTCGGTGGCGCGCCGGGAGAGGACGGTGGTGACCTTGGTGGTGGAGGGG
GGGGAGGCAGAGGCCAAGGGTGTGGCGGTGGGAAGCATGATCGTCTCGAT
AAATGGGGAGGAGGTGACGGGCTTGACATACAAGGAGACCCTGGAGCGGA
TCAAGGGGCAGGCGCGGCCCATGCAGGTGGTATTTGAGCGTGAGTCTTTG
AATGAGGACGTGCTTCAGGGGTATTTCTTTGTTTCCAAGGGGCCCTTCTT
CTCGAACCCGACGACCATGGACAAATGGAAGCGTAAGTACATCGTGCTGG
GAGGGCCGATTGCCAAGAAGAACGTGTTGCAGATTTATGACTCCAAACGG
GCCTATCACAACACTGTTGTGGCCTTGTTTCAACGAAAAAGACCGTCGCA
TCGGGTCAAGACGTACGCTCTGACCTATGCCTTTAAGCTCTCTCAGCTGC
AAGAACGGCGGATGGATGGACATACCGCTCCGTTGAAATTTTTCGCCTTT
ATGACCCCGGCTGCCAGGTTCAAGTCGGTGCGGATCGCGTCGGAGACGAG
AAAAAGCGTGCAAGGCTTACAAGAGAGGTTCAGCCGTTTCGCGGGCAAAT
CGACACGCTAA back to top
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